Y0R
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N2 | S1 | sing | 1.66Å | 1.61Å | |
| O6 | S1 | doub | 1.42Å | 1.42Å | |
| S1 | C7 | sing | 1.76Å | 1.68Å | |
| S1 | O5 | doub | 1.42Å | 1.44Å | |
| C7 | C11 | doub | 1.33Å | 1.40Å | Aromatic |
| C7 | S8 | sing | 1.76Å | 1.73Å | Aromatic |
| C11 | C10 | sing | 1.38Å | 1.43Å | Aromatic |
| S8 | C9 | sing | 1.76Å | 1.71Å | Aromatic |
| C10 | C9 | doub | 1.35Å | 1.40Å | Aromatic |
| C9 | C12 | sing | 1.48Å | 1.51Å | |
| N16 | C12 | sing | 1.34Å | 1.35Å | Aromatic |
| N16 | N15 | doub | 1.29Å | 1.40Å | Aromatic |
| C12 | C13 | doub | 1.36Å | 1.39Å | Aromatic |
| N15 | N14 | sing | 1.40Å | 1.41Å | Aromatic |
| C13 | N14 | sing | 1.36Å | 1.35Å | Aromatic |
| N14 | C24 | sing | 1.40Å | 1.36Å | |
| C29 | C24 | doub | 1.39Å | 1.42Å | Aromatic |
| C29 | C28 | sing | 1.38Å | 1.40Å | Aromatic |
| C24 | C25 | sing | 1.39Å | 1.41Å | Aromatic |
| C28 | C27 | doub | 1.38Å | 1.40Å | Aromatic |
| C25 | C26 | doub | 1.38Å | 1.40Å | Aromatic |
| C27 | C26 | sing | 1.38Å | 1.39Å | Aromatic |
| C27 | C23 | sing | 1.51Å | 1.51Å | |
| N2 | H1N2 | sing | 0.97Å | 1.00Å | |
| N2 | H2N2 | sing | 0.97Å | 1.00Å | |
| C10 | H10 | sing | 1.08Å | 1.08Å | |
| C11 | H11 | sing | 1.08Å | 1.08Å | |
| C13 | H13 | sing | 1.08Å | 1.08Å | |
| C23 | H123 | sing | 1.09Å | 1.10Å | |
| C23 | H223 | sing | 1.09Å | 1.10Å | |
| C23 | H323 | sing | 1.09Å | 1.10Å | |
| C25 | H25 | sing | 1.08Å | 1.08Å | |
| C26 | H26 | sing | 1.08Å | 1.08Å | |
| C28 | H28 | sing | 1.08Å | 1.08Å | |
| C29 | H29 | sing | 1.08Å | 1.08Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| N2 | S1 | O6 | 110.0° | 106.4° |
| N2 | S1 | C7 | 112.5° | 107.2° |
| N2 | S1 | O5 | 110.1° | 106.4° |
| S1 | N2 | H1N2 | 109.5° | 120.0° |
| S1 | N2 | H2N2 | 109.5° | 120.0° |
| O6 | S1 | C7 | 110.5° | 106.4° |
| O6 | S1 | O5 | 111.3° | 123.2° |
| C7 | S1 | O5 | 102.3° | 106.3° |
| S1 | C7 | C11 | 127.0° | 125.1° |
| S1 | C7 | S8 | 121.8° | 125.1° |
| C11 | C7 | S8 | 111.0° | 109.8° |
| C7 | C11 | C10 | 112.1° | 115.1° |
| C7 | C11 | H11 | 123.9° | 122.5° |
| C7 | S8 | C9 | 92.8° | 91.0° |
| C11 | C10 | C9 | 112.4° | 114.7° |
| C11 | C10 | H10 | 123.8° | 122.6° |
| C10 | C11 | H11 | 124.0° | 122.4° |
| S8 | C9 | C10 | 111.7° | 109.5° |
| S8 | C9 | C12 | 117.0° | 125.3° |
| C10 | C9 | C12 | 131.2° | 125.2° |
| C9 | C10 | H10 | 123.8° | 122.7° |
| C9 | C12 | N16 | 119.5° | 125.7° |
| C9 | C12 | C13 | 126.1° | 125.7° |
| C12 | N16 | N15 | 106.4° | 109.9° |
| N16 | C12 | C13 | 114.0° | 108.6° |
| N16 | N15 | N14 | 103.6° | 108.4° |
| C12 | C13 | N14 | 101.6° | 106.6° |
| C12 | C13 | H13 | 129.2° | 126.7° |
| N15 | N14 | C13 | 114.3° | 106.5° |
| N15 | N14 | C24 | 120.1° | 126.7° |
| C13 | N14 | C24 | 125.6° | 126.7° |
| N14 | C13 | H13 | 129.2° | 126.7° |
| N14 | C24 | C29 | 122.7° | 120.1° |
| N14 | C24 | C25 | 123.2° | 120.0° |
| C24 | C29 | C28 | 123.3° | 119.9° |
| C29 | C24 | C25 | 114.1° | 119.9° |
| C24 | C29 | H29 | 118.4° | 120.1° |
| C29 | C28 | C27 | 120.0° | 120.1° |
| C29 | C28 | H28 | 120.0° | 120.0° |
| C28 | C29 | H29 | 118.3° | 120.0° |
| C24 | C25 | C26 | 123.0° | 119.9° |
| C24 | C25 | H25 | 118.5° | 120.0° |
| C28 | C27 | C26 | 118.3° | 120.1° |
| C28 | C27 | C23 | 121.4° | 119.9° |
| C27 | C28 | H28 | 120.0° | 119.9° |
| C25 | C26 | C27 | 121.2° | 120.1° |
| C26 | C25 | H25 | 118.4° | 120.0° |
| C25 | C26 | H26 | 119.4° | 120.0° |
| C26 | C27 | C23 | 120.3° | 120.0° |
| C27 | C26 | H26 | 119.4° | 119.9° |
| C27 | C23 | H123 | 109.5° | 109.5° |
| C27 | C23 | H223 | 109.5° | 109.5° |
| C27 | C23 | H323 | 109.4° | 109.5° |
| H1N2 | N2 | H2N2 | 109.5° | 120.0° |
| H123 | C23 | H223 | 109.5° | 109.5° |
| H123 | C23 | H323 | 109.4° | 109.4° |
| H223 | C23 | H323 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| N2 | S1 | O6 | C7 | 124.8° | 114.1° |
| N2 | S1 | O6 | O5 | 122.3° | 123.0° |
| N2 | S1 | C7 | O5 | 118.0° | 113.5° |
| N2 | S1 | C7 | C11 | 48.9° | 90.0° |
| N2 | S1 | C7 | S8 | 135.7° | 89.7° |
| S1 | N2 | H1N2 | H2N2 | 120.0° | 179.9° |
| O6 | S1 | C7 | O5 | 118.6° | 132.9° |
| O6 | S1 | C7 | C11 | 172.3° | 156.5° |
| O6 | S1 | C7 | S8 | 12.3° | 23.9° |
| O6 | S1 | N2 | H1N2 | 180.0° | 36.5° |
| O6 | S1 | N2 | H2N2 | 60.0° | 143.6° |
| S1 | C7 | C11 | S8 | 175.8° | 179.7° |
| S1 | C7 | C11 | C10 | 176.7° | 179.8° |
| S1 | C7 | S8 | C9 | 177.6° | 180.0° |
| C7 | S1 | N2 | H1N2 | 56.3° | 150.0° |
| C7 | S1 | N2 | H2N2 | 176.3° | 30.0° |
| S1 | C7 | C11 | H11 | 3.3° | 0.0° |
| O5 | S1 | C7 | C11 | 69.1° | 23.5° |
| O5 | S1 | C7 | S8 | 106.3° | 156.8° |
| O5 | S1 | N2 | H1N2 | 57.0° | 96.5° |
| O5 | S1 | N2 | H2N2 | 63.0° | 83.5° |
| C7 | C11 | C10 | H11 | 180.0° | 179.8° |
| C11 | C7 | S8 | C9 | 1.5° | 0.3° |
| C7 | C11 | C10 | C9 | 0.3° | 0.5° |
| C7 | C11 | C10 | H10 | 179.7° | 179.8° |
| S8 | C7 | C11 | C10 | 0.9° | 0.5° |
| C7 | S8 | C9 | C10 | 1.7° | 0.0° |
| C7 | S8 | C9 | C12 | 177.5° | 180.0° |
| S8 | C7 | C11 | H11 | 179.1° | 179.7° |
| C11 | C10 | C9 | S8 | 1.4° | 0.3° |
| C11 | C10 | C9 | H10 | 180.0° | 179.7° |
| C11 | C10 | C9 | C12 | 176.5° | 179.7° |
| S8 | C9 | C10 | C12 | 175.1° | 180.0° |
| S8 | C9 | C12 | N16 | 16.6° | 179.7° |
| S8 | C9 | C12 | C13 | 154.7° | 0.0° |
| S8 | C9 | C10 | H10 | 178.6° | 180.0° |
| C10 | C9 | C12 | N16 | 168.6° | 0.3° |
| C10 | C9 | C12 | C13 | 20.1° | 180.0° |
| C9 | C10 | C11 | H11 | 179.7° | 179.7° |
| C9 | C12 | N16 | C13 | 172.3° | 179.8° |
| C9 | C12 | N16 | N15 | 176.2° | 179.8° |
| C9 | C12 | C13 | N14 | 175.4° | 180.0° |
| C12 | C9 | C10 | H10 | 3.5° | 0.0° |
| C9 | C12 | C13 | H13 | 4.5° | 0.0° |
| C12 | N16 | N15 | N14 | 2.3° | 0.4° |
| N16 | C12 | C13 | N14 | 3.7° | 0.3° |
| N16 | C12 | C13 | H13 | 176.2° | 179.8° |
| N15 | N16 | C12 | C13 | 3.9° | 0.4° |
| N16 | N15 | N14 | C13 | 0.1° | 0.3° |
| N16 | N15 | N14 | C24 | 179.1° | 179.7° |
| C12 | C13 | N14 | N15 | 2.1° | 0.0° |
| C12 | C13 | N14 | H13 | 180.0° | 179.9° |
| C12 | C13 | N14 | C24 | 178.8° | 180.0° |
| N15 | N14 | C13 | C24 | 179.1° | 180.0° |
| N15 | N14 | C24 | C29 | 23.3° | 179.6° |
| N15 | N14 | C24 | C25 | 155.3° | 0.0° |
| N15 | N14 | C13 | H13 | 177.9° | 179.9° |
| C13 | N14 | C24 | C29 | 157.6° | 0.4° |
| C13 | N14 | C24 | C25 | 23.8° | 180.0° |
| N14 | C24 | C29 | C25 | 178.7° | 179.6° |
| N14 | C24 | C29 | C28 | 179.4° | 179.7° |
| N14 | C24 | C25 | C26 | 179.7° | 180.0° |
| C24 | N14 | C13 | H13 | 1.2° | 0.1° |
| N14 | C24 | C25 | H25 | 0.4° | 0.1° |
| N14 | C24 | C29 | H29 | 0.6° | 0.1° |
| C24 | C29 | C28 | H29 | 180.0° | 179.7° |
| C24 | C29 | C28 | C27 | 0.3° | 0.7° |
| C29 | C24 | C25 | C26 | 0.9° | 0.4° |
| C29 | C24 | C25 | H25 | 179.1° | 179.7° |
| C24 | C29 | C28 | H28 | 179.7° | 179.7° |
| C28 | C29 | C24 | C25 | 0.7° | 0.7° |
| C29 | C28 | C27 | H28 | 180.0° | 179.6° |
| C29 | C28 | C27 | C26 | 0.0° | 0.4° |
| C29 | C28 | C27 | C23 | 179.7° | 179.7° |
| C24 | C25 | C26 | H25 | 180.0° | 179.9° |
| C24 | C25 | C26 | C27 | 0.7° | 0.1° |
| C24 | C25 | C26 | H26 | 179.3° | 180.0° |
| C25 | C24 | C29 | H29 | 179.3° | 179.7° |
| C28 | C27 | C26 | C25 | 0.2° | 0.1° |
| C28 | C27 | C26 | C23 | 179.7° | 179.9° |
| C28 | C27 | C23 | H123 | 89.8° | 90.1° |
| C28 | C27 | C23 | H223 | 150.2° | 30.0° |
| C28 | C27 | C23 | H323 | 30.2° | 150.0° |
| C28 | C27 | C26 | H26 | 179.8° | 180.0° |
| C27 | C28 | C29 | H29 | 179.8° | 179.7° |
| C25 | C26 | C27 | H26 | 180.0° | 179.9° |
| C25 | C26 | C27 | C23 | 179.5° | 180.0° |
| C26 | C27 | C23 | H123 | 89.8° | 90.0° |
| C26 | C27 | C23 | H223 | 30.2° | 149.9° |
| C26 | C27 | C23 | H323 | 150.2° | 29.9° |
| C27 | C26 | C25 | H25 | 179.3° | 180.0° |
| C26 | C27 | C28 | H28 | 180.0° | 180.0° |
| C27 | C23 | H123 | H223 | 120.0° | 120.0° |
| C27 | C23 | H123 | H323 | 120.0° | 120.0° |
| C27 | C23 | H223 | H323 | 120.0° | 120.0° |
| C23 | C27 | C26 | H26 | 0.5° | 0.1° |
| C23 | C27 | C28 | H28 | 0.3° | 0.1° |
| H10 | C10 | C11 | H11 | 0.3° | 0.0° |
| H123 | C23 | H223 | H323 | 120.0° | 120.0° |
| H25 | C25 | C26 | H26 | 0.7° | 0.1° |
| H28 | C28 | C29 | H29 | 0.2° | 0.0° |






