English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

XZZ

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
CL	C6	sing	1.74Å	1.70Å
C6	C5	sing	1.37Å	1.39Å	Aromatic
C6	C7	doub	1.39Å	1.39Å	Aromatic
C5	C4A	doub	1.40Å	1.40Å	Aromatic
C4A	C4	sing	1.46Å	1.40Å
C4A	C8A	sing	1.41Å	1.40Å	Aromatic
C4	CM4	sing	1.51Å	1.40Å
C4	C3	doub	1.36Å	1.39Å
C3	C2	sing	1.41Å	1.39Å
C2	O2	doub	1.22Å	1.36Å
C2	O1	sing	1.34Å	1.37Å
O1	C8A	sing	1.35Å	1.37Å
C8A	C8	doub	1.39Å	1.39Å	Aromatic
C8	C7	sing	1.38Å	1.39Å	Aromatic
C7	O7	sing	1.36Å	1.42Å
C5	H5	sing	1.08Å	1.08Å
CM4	HM41	sing	1.09Å	1.10Å
CM4	HM42	sing	1.09Å	1.10Å
CM4	HM43	sing	1.09Å	1.10Å
C3	H3	sing	1.08Å	1.08Å
C8	H8	sing	1.08Å	1.08Å
O7	H7	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
CL	C6	C5	121.7°	119.8°
CL	C6	C7	116.9°	119.8°
C5	C6	C7	121.4°	120.4°
C6	C5	C4A	119.8°	119.8°
C6	C5	H5	120.1°	120.1°
C6	C7	C8	119.3°	120.6°
C6	C7	O7	118.3°	119.7°
C5	C4A	C4	121.0°	121.0°
C5	C4A	C8A	118.5°	120.1°
C4A	C5	H5	120.1°	120.1°
C4	C4A	C8A	120.5°	119.0°
C4A	C4	CM4	121.8°	120.9°
C4A	C4	C3	119.1°	118.2°
C4A	C8A	O1	119.6°	119.9°
C4A	C8A	C8	121.2°	119.4°
CM4	C4	C3	119.1°	120.9°
C4	CM4	HM41	109.5°	109.5°
C4	CM4	HM42	109.5°	109.5°
C4	CM4	HM43	109.5°	109.5°
C4	C3	C2	119.1°	119.8°
C4	C3	H3	120.5°	120.1°
C3	C2	O2	119.6°	119.1°
C3	C2	O1	121.9°	121.7°
C2	C3	H3	120.5°	120.0°
O2	C2	O1	118.4°	119.2°
C2	O1	C8A	119.9°	121.5°
O1	C8A	C8	119.2°	120.7°
C8A	C8	C7	119.8°	119.8°
C8A	C8	H8	120.1°	120.1°
C8	C7	O7	122.4°	119.7°
C7	C8	H8	120.1°	120.1°
C7	O7	H7	109.5°	114.1°
HM41	CM4	HM42	109.5°	109.5°
HM41	CM4	HM43	109.4°	109.5°
HM42	CM4	HM43	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
CL	C6	C5	C7	179.6°	180.0°
CL	C6	C5	C4A	180.0°	180.0°
CL	C6	C7	C8	179.2°	180.0°
CL	C6	C7	O7	0.9°	0.0°
CL	C6	C5	H5	0.0°	0.3°
C6	C5	C4A	H5	180.0°	179.8°
C6	C5	C4A	C4	179.9°	179.8°
C6	C5	C4A	C8A	0.4°	0.2°
C5	C6	C7	C8	1.2°	0.0°
C5	C6	C7	O7	179.5°	180.0°
C7	C6	C5	C4A	0.4°	0.1°
C6	C7	C8	C8A	1.3°	0.3°
C6	C7	C8	O7	178.2°	180.0°
C7	C6	C5	H5	179.6°	179.7°
C6	C7	C8	H8	178.7°	179.8°
C6	C7	O7	H7	180.0°	90.0°
C5	C4A	C4	C8A	179.5°	180.0°
C5	C4A	C4	CM4	0.0°	0.0°
C5	C4A	C4	C3	179.0°	180.0°
C5	C4A	C8A	O1	179.7°	180.0°
C5	C4A	C8A	C8	0.3°	0.5°
C4A	C4	CM4	C3	179.0°	180.0°
C4A	C4	C3	C2	0.8°	0.1°
C4	C4A	C8A	O1	0.2°	0.1°
C4	C4A	C8A	C8	179.8°	179.5°
C4	C4A	C5	H5	0.1°	0.0°
C4A	C4	CM4	HM41	180.0°	180.0°
C4A	C4	CM4	HM42	60.0°	59.9°
C4A	C4	CM4	HM43	60.0°	60.0°
C4A	C4	C3	H3	179.2°	180.0°
C8A	C4A	C4	CM4	179.6°	179.9°
C8A	C4A	C4	C3	0.6°	0.0°
C4A	C8A	O1	C2	0.8°	0.0°
C4A	C8A	O1	C8	180.0°	179.6°
C4A	C8A	C8	C7	0.5°	0.5°
C8A	C4A	C5	H5	179.7°	179.9°
C4A	C8A	C8	H8	179.5°	179.6°
CM4	C4	C3	C2	179.8°	179.9°
C4	CM4	HM41	HM42	120.0°	120.0°
C4	CM4	HM41	HM43	120.0°	120.0°
C4	CM4	HM42	HM43	120.0°	120.0°
CM4	C4	C3	H3	0.2°	0.0°
C4	C3	C2	H3	180.0°	179.9°
C4	C3	C2	O2	179.3°	179.9°
C4	C3	C2	O1	0.2°	0.2°
C3	C4	CM4	HM41	1.0°	0.0°
C3	C4	CM4	HM42	121.0°	120.0°
C3	C4	CM4	HM43	119.0°	120.0°
C3	C2	O2	O1	179.5°	179.9°
C3	C2	O1	C8A	0.6°	0.1°
O2	C2	O1	C8A	179.9°	180.0°
O2	C2	C3	H3	0.7°	0.0°
C2	O1	C8A	C8	179.3°	179.6°
O1	C2	C3	H3	179.8°	179.9°
O1	C8A	C8	C7	179.4°	179.9°
O1	C8A	C8	H8	0.5°	0.0°
C8A	C8	C7	H8	180.0°	179.9°
C8A	C8	C7	O7	179.4°	179.8°
C8	C7	O7	H7	1.8°	90.0°
O7	C7	C8	H8	0.6°	0.2°
HM41	CM4	HM42	HM43	120.0°	120.0°

249697

PDB entries from 2026-02-25

PDB statistics

PDBj update info

Contact PDBj

numon