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XYQ

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O5CHdoub1.21Å1.34Å
CHCH3sing1.51Å1.43Å
CHOHsing1.34Å1.40Å
CH3HH31sing1.09Å1.10Å
CH3HH32sing1.09Å1.10Å
CH3HH33sing1.09Å1.10Å
OHC1Nsing1.45Å1.44Å
C1NC2Nsing1.54Å1.53Å
C1NO4Nsing1.43Å1.38Å
C1NH1Nsing1.09Å1.10Å
C2NC3Nsing1.55Å1.49Å
C2NO2Nsing1.43Å1.40Å
C2NH2Nsing1.09Å1.10Å
C3NO3Nsing1.43Å1.46Å
C3NC4Nsing1.55Å1.48Å
C3NH3Nsing1.09Å1.10Å
O3NHO3Nsing0.97Å0.95Å
O2NHO2Nsing0.97Å0.95Å
O4NC4Nsing1.44Å1.43Å
C4NC5Nsing1.53Å1.54Å
C4NH4Nsing1.09Å1.10Å
C5NO5Nsing1.43Å1.42Å
C5NH5N1sing1.09Å1.10Å
C5NH5N2sing1.09Å1.10Å
O5NPNsing1.61Å1.63Å
PNON2sing1.61Å1.47Å
PNON1doub1.48Å1.45Å
PNON3sing1.61Å1.62Å
ON2HON2sing0.97Å0.95Å
ON3PAsing1.61Å1.62Å
PAOA2sing1.61Å1.49Å
PAO5Asing1.61Å1.57Å
PAOA1doub1.48Å1.53Å
OA2HOA2sing0.97Å0.95Å
O5AC5Asing1.43Å1.44Å
C5AC4Asing1.53Å1.50Å
C5AH5A1sing1.09Å1.10Å
C5AH5A2sing1.09Å1.10Å
C4AO4Asing1.44Å1.44Å
C4AC3Asing1.54Å1.51Å
C4AH4Asing1.09Å1.10Å
O4AC1Asing1.44Å1.45Å
C1AN9sing1.47Å1.46Å
C1AC2Asing1.55Å1.54Å
C1AH1Asing1.09Å1.10Å
N9C8sing1.36Å1.36ÅAromatic
N9C4sing1.37Å1.31ÅAromatic
C8N7doub1.30Å1.38ÅAromatic
C8H8sing1.08Å1.08Å
N7C5sing1.35Å1.33ÅAromatic
C5C4sing1.41Å1.35ÅAromatic
C5C6doub1.41Å1.36ÅAromatic
C4N3doub1.33Å1.43ÅAromatic
N3C2sing1.32Å1.35ÅAromatic
C2N1doub1.32Å1.35ÅAromatic
C2H2sing1.08Å1.08Å
N1C6sing1.33Å1.33ÅAromatic
C6N6sing1.38Å1.36Å
N6HN61sing0.97Å1.00Å
N6HN62sing0.97Å1.00Å
C2AC3Asing1.55Å1.53Å
C2AO2Asing1.43Å1.39Å
C2AH2Asing1.09Å1.10Å
C3AO3Asing1.43Å1.45Å
C3AH3Asing1.09Å1.10Å
O3AHO3Asing0.97Å0.95Å
O2AHO2Asing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O5CHCH3120.0°120.0°
O5CHOH121.6°120.0°
CH3CHOH118.4°120.1°
CHCH3HH31109.5°109.5°
CHCH3HH32109.5°109.5°
CHCH3HH33109.5°109.5°
CHOHC1N116.2°120.1°
HH31CH3HH32109.5°109.5°
HH31CH3HH33109.4°109.5°
HH32CH3HH33109.5°109.5°
OHC1NC2N104.1°109.9°
OHC1NO4N96.0°109.8°
OHC1NH1N120.8°109.8°
C2NC1NO4N109.9°107.6°
C2NC1NH1N109.1°109.9°
C1NC2NC3N102.9°102.2°
C1NC2NO2N118.0°111.0°
C1NC2NH2N111.7°110.9°
O4NC1NH1N115.8°109.8°
C1NO4NC4N109.2°110.0°
C3NC2NO2N117.4°110.9°
C3NC2NH2N112.4°110.8°
C2NC3NO3N108.7°111.1°
C2NC3NC4N106.8°101.0°
C2NC3NH3N110.1°111.1°
O2NC2NH2N94.8°110.8°
C2NO2NHO2N109.5°106.8°
O3NC3NC4N104.2°111.1°
O3NC3NH3N112.5°111.0°
C3NO3NHO3N109.5°106.8°
C4NC3NH3N114.2°111.2°
C3NC4NO4N108.5°105.1°
C3NC4NC5N106.0°110.3°
C3NC4NH4N112.3°110.4°
O4NC4NC5N109.3°110.3°
O4NC4NH4N109.2°110.3°
C5NC4NH4N111.5°110.3°
C4NC5NO5N109.6°109.4°
C4NC5NH5N1109.4°109.5°
C4NC5NH5N2109.4°109.5°
O5NC5NH5N1109.4°109.5°
O5NC5NH5N2109.4°109.5°
C5NO5NPN122.2°106.7°
H5N1C5NH5N2109.6°109.5°
O5NPNON2110.4°109.5°
O5NPNON1105.8°109.5°
O5NPNON399.6°109.4°
ON2PNON1124.0°109.5°
ON2PNON3102.9°109.4°
PNON2HON2109.5°106.9°
ON1PNON3111.4°109.4°
PNON3PA125.5°106.8°
ON3PAOA2101.2°109.5°
ON3PAO5A106.2°109.5°
ON3PAOA1111.9°109.4°
OA2PAO5A114.1°109.5°
OA2PAOA1117.5°109.5°
PAOA2HOA2109.5°106.8°
O5APAOA1105.5°109.4°
PAO5AC5A121.7°106.8°
O5AC5AC4A107.8°109.5°
O5AC5AH5A1110.4°109.5°
O5AC5AH5A2110.0°109.4°
C4AC5AH5A1110.4°109.5°
C4AC5AH5A2110.0°109.5°
C5AC4AO4A111.7°109.9°
C5AC4AC3A107.1°109.9°
C5AC4AH4A109.2°109.8°
H5A1C5AH5A2108.2°109.5°
O4AC4AC3A108.1°107.4°
O4AC4AH4A108.1°109.8°
C4AO4AC1A109.4°106.9°
C3AC4AH4A112.7°109.9°
C4AC3AC2A107.8°104.1°
C4AC3AO3A101.1°110.8°
C4AC3AH3A114.7°110.5°
O4AC1AN9107.0°110.6°
O4AC1AC2A109.3°103.5°
O4AC1AH1A117.9°110.6°
N9C1AC2A123.5°110.8°
N9C1AH1A101.1°110.6°
C1AN9C8129.3°126.3°
C1AN9C4123.2°126.2°
C2AC1AH1A98.3°110.6°
C1AC2AC3A102.4°102.1°
C1AC2AO2A110.6°110.9°
C1AC2AH2A116.2°110.9°
C8N9C4107.0°107.5°
N9C8N7108.6°110.0°
N9C8H8125.7°125.0°
N9C4C5109.4°106.0°
N9C4N3127.7°135.0°
N7C8H8125.7°125.0°
C8N7C5105.8°109.4°
N7C5C4108.9°107.1°
N7C5C6134.4°134.7°
C4C5C6116.5°118.2°
C5C4N3122.6°119.0°
C5C6N1121.0°118.4°
C5C6N6112.9°120.8°
C4N3C2118.1°120.7°
N3C2N1117.3°122.4°
N3C2H2121.4°118.8°
N1C2H2121.4°118.8°
C2N1C6124.3°121.2°
N1C6N6126.1°120.8°
C6N6HN61109.5°119.9°
C6N6HN62109.5°120.0°
HN61N6HN62109.4°120.1°
C3AC2AO2A116.8°110.9°
C3AC2AH2A109.8°111.0°
C2AC3AO3A106.5°110.5°
C2AC3AH3A110.0°110.5°
O2AC2AH2A101.6°110.8°
C2AO2AHO2A109.5°106.8°
O3AC3AH3A115.9°110.4°
C3AO3AHO3A109.5°106.8°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O5CHCH3OH177.6°180.0°
O5CHCH3HH31119.6°0.0°
O5CHCH3HH32120.4°120.0°
O5CHCH3HH330.4°120.0°
O5CHOHC1N172.1°0.0°
CHCH3HH31HH32120.0°120.0°
CHCH3HH31HH33120.0°120.0°
CHCH3HH32HH33120.0°120.0°
CH3CHOHC1N5.4°180.0°
OHCHCH3HH3158.0°180.0°
OHCHCH3HH3262.1°60.0°
OHCHCH3HH33177.9°60.0°
CHOHC1NC2N98.9°170.2°
CHOHC1NO4N148.8°71.6°
CHOHC1NH1N23.9°49.2°
HH31CH3HH32HH33120.0°120.0°
OHC1NC2NO4N101.9°119.6°
OHC1NC2NH1N130.2°121.0°
OHC1NO4NH1N128.5°120.9°
OHC1NC2NC3N87.1°140.8°
OHC1NC2NO2N43.9°22.6°
OHC1NC2NH2N152.2°101.0°
OHC1NO4NC4N100.1°117.8°
C2NC1NO4NH1N124.2°119.5°
C1NC2NC3NO2N131.4°118.3°
C1NC2NC3NH2N120.2°118.2°
C1NC2NO2NH2N117.7°123.7°
C1NC2NC3NO3N95.7°152.0°
C1NC2NC3NC4N16.2°34.1°
C1NC2NC3NH3N140.7°83.9°
C1NC2NO2NHO2N30.2°67.1°
C2NC1NO4NC4N7.3°1.8°
O4NC1NC2NC3N14.7°21.2°
O4NC1NC2NO2N145.8°97.0°
O4NC1NC2NH2N106.0°139.4°
C1NO4NC4NC3N3.5°24.5°
C1NO4NC4NC5N111.6°143.5°
C1NO4NC4NH4N126.2°94.5°
H1NC1NC2NC3N142.7°98.2°
H1NC1NC2NO2N86.3°143.5°
H1NC1NC2NH2N22.0°19.9°
H1NC1NO4NC4N131.4°121.4°
C3NC2NO2NH2N118.3°123.5°
C2NC3NO3NC4N113.7°111.6°
C2NC3NO3NH3N122.1°124.2°
C2NC3NC4NH3N121.9°117.9°
C2NC3NO3NHO3N179.0°68.4°
C3NC2NO2NHO2N93.8°180.0°
C2NC3NC4NO4N12.9°36.5°
C2NC3NC4NC5N104.3°155.4°
C2NC3NC4NH4N133.7°82.5°
O2NC2NC3NO3N35.7°33.7°
O2NC2NC3NC4N147.6°84.2°
O2NC2NC3NH3N87.9°157.8°
H2NC2NC3NO3N144.1°89.7°
H2NC2NC3NC4N104.0°152.3°
H2NC2NC3NH3N20.5°34.4°
H2NC2NO2NHO2N147.9°56.5°
O3NC3NC4NH3N123.1°124.2°
O3NC3NC4NO4N102.1°154.4°
O3NC3NC4NC5N140.7°86.7°
O3NC3NC4NH4N18.7°35.4°
C4NC3NO3NHO3N67.4°180.0°
C3NC4NO4NC5N115.1°118.9°
C3NC4NO4NH4N122.7°119.0°
C3NC4NC5NH4N122.5°122.2°
C3NC4NC5NO5N77.7°177.8°
C3NC4NC5NH5N1162.3°57.8°
C3NC4NC5NH5N242.3°62.2°
H3NC3NO3NHO3N56.8°55.8°
H3NC3NC4NO4N134.9°81.4°
H3NC3NC4NC5N17.6°37.5°
H3NC3NC4NH4N104.4°159.6°
O4NC4NC5NH4N120.8°122.1°
O4NC4NC5NO5N165.6°66.5°
O4NC4NC5NH5N145.6°173.5°
O4NC4NC5NH5N274.4°53.5°
C4NC5NO5NH5N1119.9°120.0°
C4NC5NO5NH5N2120.0°120.0°
C4NC5NH5N1H5N2119.9°120.0°
C4NC5NO5NPN129.8°180.0°
H4NC4NC5NO5N44.8°55.6°
H4NC4NC5NH5N175.2°64.4°
H4NC4NC5NH5N2164.8°175.6°
O5NC5NH5N1H5N2120.0°120.0°
C5NO5NPNON243.6°65.1°
C5NO5NPNON1179.8°55.0°
C5NO5NPNON364.2°175.0°
H5N1C5NO5NPN110.2°60.0°
H5N2C5NO5NPN9.8°60.0°
O5NPNON2ON1127.1°120.1°
O5NPNON2ON3105.6°120.0°
O5NPNON1ON3107.3°120.0°
O5NPNON2HON240.4°60.0°
O5NPNON3PA80.5°165.0°
ON2PNON1ON3123.7°120.0°
ON2PNON3PA165.7°75.0°
ON1PNON2HON286.7°180.0°
ON1PNON3PA30.8°45.0°
ON3PNON2HON2146.0°60.0°
PNON3PAOA2171.7°75.0°
PNON3PAO5A68.9°165.0°
PNON3PAOA145.8°45.0°
ON3PAOA2O5A113.6°120.0°
ON3PAOA2OA1122.1°120.0°
ON3PAO5AOA1119.0°119.9°
ON3PAOA2HOA236.9°60.0°
ON3PAO5AC5A71.8°175.0°
OA2PAO5AOA1130.4°120.1°
OA2PAO5AC5A38.8°65.0°
O5APAOA2HOA2150.5°60.0°
PAO5AC5AC4A172.8°180.0°
PAO5AC5AH5A152.1°59.9°
PAO5AC5AH5A267.2°60.1°
OA1PAOA2HOA285.2°180.0°
OA1PAO5AC5A169.2°55.1°
O5AC5AC4AH5A1120.7°120.0°
O5AC5AC4AH5A2120.0°120.0°
O5AC5AH5A1H5A2120.5°120.0°
O5AC5AC4AO4A166.5°66.7°
O5AC5AC4AC3A75.3°175.3°
O5AC5AC4AH4A46.9°54.3°
C4AC5AH5A1H5A2120.4°120.0°
C5AC4AO4AC3A117.6°119.5°
C5AC4AO4AH4A120.1°120.9°
C5AC4AC3AH4A120.0°121.0°
C5AC4AO4AC1A118.4°145.9°
C5AC4AC3AC2A110.4°121.4°
C5AC4AC3AO3A138.1°119.9°
C5AC4AC3AH3A12.6°2.8°
H5A1C5AC4AO4A72.8°53.3°
H5A1C5AC4AC3A45.4°64.7°
H5A1C5AC4AH4A167.6°174.3°
H5A2C5AC4AO4A46.5°173.3°
H5A2C5AC4AC3A164.7°55.3°
H5A2C5AC4AH4A73.1°65.7°
O4AC4AC3AH4A119.5°119.5°
C4AO4AC1AN9147.3°158.7°
C4AO4AC1AC2A11.3°40.0°
C4AO4AC1AH1A99.7°78.5°
O4AC4AC3AC2A10.1°1.9°
O4AC4AC3AO3A101.5°120.6°
O4AC4AC3AH3A133.0°116.7°
C3AC4AO4AC1A0.8°26.4°
C4AC3AC2AC1A15.9°21.0°
C4AC3AC2AO3A107.9°118.9°
C4AC3AC2AH3A125.8°118.6°
C4AC3AC2AO2A136.8°139.2°
C4AC3AC2AH2A108.2°97.2°
C4AC3AO3AH3A124.7°122.7°
C4AC3AO3AHO3A128.1°176.2°
H4AC4AO4AC1A121.5°93.1°
H4AC4AC3AC2A129.5°117.6°
H4AC4AC3AO3A18.0°1.2°
H4AC4AC3AH3A107.5°123.8°
O4AC1AN9C2A128.2°114.2°
O4AC1AN9H1A123.9°122.9°
O4AC1AC2AH1A123.5°118.5°
O4AC1AN9C877.0°23.6°
O4AC1AN9C492.8°156.7°
O4AC1AC2AC3A16.7°37.1°
O4AC1AC2AO2A141.9°155.3°
O4AC1AC2AH2A103.0°81.2°
N9C1AC2AH1A109.3°122.9°
C1AN9C8C4171.0°179.8°
C1AN9C8N7175.4°179.9°
C1AN9C8H84.6°0.1°
C1AN9C4C5177.2°179.9°
C1AN9C4N38.6°0.8°
N9C1AC2AC3A143.9°155.6°
N9C1AC2AO2A90.9°86.2°
N9C1AC2AH2A24.2°37.4°
C2AC1AN9C851.2°90.6°
C2AC1AN9C4139.0°89.1°
C1AC2AC3AO2A120.9°118.2°
C1AC2AC3AH2A124.1°118.2°
C1AC2AO2AH2A124.0°123.6°
C1AC2AC3AO3A92.0°98.0°
C1AC2AC3AH3A141.7°139.6°
C1AC2AO2AHO2A80.0°180.0°
H1AC1AN9C8159.1°146.4°
H1AC1AN9C431.2°33.9°
H1AC1AC2AC3A106.8°81.4°
H1AC1AC2AO2A18.3°36.8°
H1AC1AC2AH2A133.5°160.3°
N9C8N7H8180.0°179.9°
N9C8N7C51.6°0.1°
C8N9C4C55.5°0.3°
C8N9C4N3179.7°179.5°
C4N9C8N74.4°0.2°
C4N9C8H8175.6°179.7°
N9C4C5N74.7°0.4°
N9C4C5N3174.5°179.3°
N9C4C5C6179.7°179.8°
N9C4N3C2178.3°179.6°
C8N7C5C41.8°0.3°
C8N7C5C6176.3°179.9°
H8C8N7C5178.5°180.0°
N7C5C4C6175.6°179.8°
N7C5C4N3179.2°179.7°
N7C5C6N1176.7°180.0°
N7C5C6N61.2°0.1°
C5C4N3C24.8°0.5°
C4C5C6N12.5°0.2°
C4C5C6N6175.3°179.7°
C6C5C4N35.2°0.5°
C5C6N1C20.6°0.0°
C5C6N1N6177.6°179.9°
C5C6N6HN6156.7°0.1°
C5C6N6HN6263.3°180.0°
C4N3C2N11.5°0.3°
C4N3C2H2178.5°179.7°
N3C2N1H2180.0°180.0°
N3C2N1C61.0°0.0°
C2N1C6N6178.1°179.9°
H2C2N1C6178.9°180.0°
N1C6N6HN61125.6°180.0°
N1C6N6HN62114.4°0.1°
C6N6HN61HN62120.1°179.9°
C3AC2AO2AH2A119.5°123.7°
C2AC3AO3AH3A122.7°122.6°
C2AC3AO3AHO3A15.5°61.4°
C3AC2AO2AHO2A163.4°67.3°
O2AC2AC3AO3A29.0°20.2°
O2AC2AC3AH3A97.4°102.2°
H2AC2AC3AO3A143.9°143.9°
H2AC2AC3AH3A17.6°21.4°
H2AC2AO2AHO2A43.9°56.4°
H3AC3AO3AHO3A107.2°61.1°

223532

PDB entries from 2024-08-07

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