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XY3

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C84N1doub1.32Å1.34ÅAromatic
N1C1sing1.33Å1.36ÅAromatic
C21N3sing1.47Å1.50Å
N3C24sing1.47Å1.49Å
N3C20sing1.47Å1.43Å
C5C4sing1.43Å1.43Å
C4C3trip1.17Å1.18Å
C6C5doub1.40Å1.44ÅAromatic
C5C10sing1.40Å1.40ÅAromatic
C11C6sing1.51Å1.53Å
C7C6sing1.38Å1.42ÅAromatic
C7C8doub1.38Å1.44ÅAromatic
C7H7sing1.08Å1.08Å
C8C9sing1.40Å1.45ÅAromatic
C8H8sing1.08Å1.08Å
C9C10doub1.39Å1.43ÅAromatic
C10H10sing1.08Å1.08Å
N2C13sing1.40Å1.44Å
C14C13doub1.39Å1.42ÅAromatic
C13C18sing1.39Å1.45ÅAromatic
C14C15sing1.38Å1.43ÅAromatic
C15C16doub1.38Å1.45ÅAromatic
C15H15sing1.08Å1.08Å
C18C17doub1.38Å1.44ÅAromatic
C16C17sing1.38Å1.44ÅAromatic
C17C19sing1.51Å1.54Å
C16C20sing1.51Å1.55Å
C20H20sing1.09Å1.10Å
C20H20Asing1.09Å1.10Å
C22C21sing1.53Å1.56Å
C21H21sing1.09Å1.10Å
C21H21Asing1.09Å1.10Å
C22N4sing1.47Å1.50Å
C22H22sing1.09Å1.10Å
C22H22Asing1.09Å1.10Å
C23C24sing1.53Å1.55Å
C24H24sing1.09Å1.10Å
C24H24Asing1.09Å1.10Å
C26N82sing1.46Å1.38Å
C26H26sing1.09Å1.10Å
C26H26Asing1.09Å1.10Å
C26H26Bsing1.09Å1.10Å
O2C81doub1.22Å1.37Å
C81C84sing1.47Å1.45Å
C81N5sing1.35Å1.11Å
N82C84sing1.37Å1.46ÅAromatic
N82C2sing1.37Å1.36ÅAromatic
C2C1doub1.39Å1.35ÅAromatic
C1H1sing1.08Å1.08Å
C3C2sing1.43Å1.38Å
C9C12sing1.48Å1.51Å
C11H11sing1.09Å1.10Å
C11H11Asing1.09Å1.10Å
C11H11Bsing1.09Å1.10Å
N2C12sing1.35Å1.36Å
C12O1doub1.21Å1.26Å
N2HN2sing0.97Å1.00Å
C14H14sing1.08Å1.08Å
C18H18sing1.08Å1.08Å
F1C19sing1.40Å1.32Å
C19F2sing1.40Å1.31Å
C19F3sing1.40Å1.33Å
N4C23sing1.47Å1.51Å
C23H23sing1.09Å1.10Å
C23H23Asing1.09Å1.10Å
C25C27sing1.53Å1.15Å
C25N4sing1.47Å1.50Å
C25H25sing1.09Å1.10Å
C25H25Asing1.09Å1.10Å
N5HN5sing0.97Å1.00Å
N5HN5Asing0.97Å1.00Å
C27O3sing1.43Å1.55Å
C27H27sing1.09Å1.10Å
C27H27Asing1.09Å1.10Å
O3HO3sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C84N1C1106.1°109.7°
N1C84C81129.8°125.5°
N1C84N82109.9°108.9°
N1C1C2110.3°108.0°
N1C1H1124.8°126.0°
C21N3C24111.1°110.9°
C21N3C20115.4°111.0°
N3C21C22109.8°109.4°
N3C21H21109.4°109.5°
N3C21H21A109.4°109.5°
C24N3C20112.8°111.0°
N3C24C23109.8°109.4°
N3C24H24109.4°109.4°
N3C24H24A109.4°109.5°
N3C20C16114.1°109.5°
N3C20H20107.9°109.5°
N3C20H20A108.0°109.5°
C5C4C3176.0°179.9°
C4C5C6121.8°120.2°
C4C5C10117.2°120.1°
C4C3C2176.5°180.0°
C6C5C10121.0°119.8°
C5C6C11121.5°119.9°
C5C6C7119.0°120.1°
C5C10C9121.0°119.7°
C5C10H10119.5°120.2°
C11C6C7119.6°120.0°
C6C11H11109.5°109.5°
C6C11H11A109.5°109.5°
C6C11H11B109.5°109.5°
C6C7C8120.5°120.3°
C6C7H7119.7°119.8°
C8C7H7119.7°119.9°
C7C8C9119.9°120.2°
C7C8H8120.1°119.9°
C9C8H8120.0°119.9°
C8C9C10118.5°119.9°
C8C9C12123.9°120.1°
C9C10H10119.5°120.2°
C10C9C12117.6°120.0°
N2C13C14118.5°120.1°
N2C13C18123.0°120.1°
C13N2C12125.9°120.0°
C13N2HN2117.1°120.0°
C14C13C18118.5°119.9°
C13C14C15120.6°119.9°
C13C14H14119.7°120.0°
C13C18C17121.8°119.9°
C13C18H18119.1°120.1°
C14C15C16120.8°120.1°
C14C15H15119.6°120.0°
C15C14H14119.7°120.1°
C16C15H15119.6°119.9°
C15C16C17119.3°120.1°
C15C16C20118.2°120.0°
C18C17C16118.9°120.0°
C18C17C19118.9°120.0°
C17C18H18119.1°120.0°
C16C17C19122.1°120.0°
C17C16C20122.5°119.9°
C17C19F1109.1°109.5°
C17C19F2114.0°109.5°
C17C19F3109.9°109.5°
C16C20H20108.0°109.5°
C16C20H20A108.0°109.5°
H20C20H20A110.9°109.4°
C22C21H21109.4°109.5°
C22C21H21A109.3°109.5°
C21C22N4111.8°109.4°
C21C22H22108.7°109.5°
C21C22H22A108.7°109.5°
H21C21H21A109.6°109.5°
N4C22H22108.7°109.5°
N4C22H22A108.7°109.5°
C22N4C23111.1°110.9°
C22N4C25111.3°111.0°
H22C22H22A110.2°109.5°
C23C24H24109.4°109.5°
C23C24H24A109.4°109.5°
C24C23N4111.0°109.4°
C24C23H23109.0°109.5°
C24C23H23A108.9°109.5°
H24C24H24A109.5°109.5°
N82C26H26109.5°109.4°
N82C26H26A109.5°109.5°
N82C26H26B109.5°109.5°
C26N82C84130.1°126.6°
C26N82C2125.0°126.6°
H26C26H26A109.5°109.4°
H26C26H26B109.4°109.5°
H26AC26H26B109.5°109.5°
O2C81C84120.2°120.0°
O2C81N5121.3°120.0°
C84C81N5118.4°120.0°
C81C84N82120.3°125.6°
C81N5HN5120.0°120.0°
C81N5HN5A120.0°120.0°
C84N82C2103.2°106.9°
N82C2C1109.7°106.5°
N82C2C3126.1°126.8°
C2C1H1124.9°126.0°
C1C2C3124.2°126.7°
C9C12N2117.4°120.0°
C9C12O1119.2°120.0°
H11C11H11A109.5°109.5°
H11C11H11B109.5°109.5°
H11AC11H11B109.5°109.4°
N2C12O1123.4°120.0°
C12N2HN2117.0°120.0°
F1C19F2106.3°109.5°
F1C19F3110.6°109.4°
F2C19F3106.9°109.4°
N4C23H23109.0°109.5°
N4C23H23A109.0°109.5°
C23N4C25114.3°111.0°
H23C23H23A110.0°109.5°
C27C25N4114.7°109.5°
C27C25H25107.8°109.5°
C27C25H25A107.8°109.5°
C25C27O3111.3°109.5°
C25C27H27108.9°109.5°
C25C27H27A108.9°109.4°
N4C25H25107.8°109.5°
N4C25H25A107.8°109.5°
H25C25H25A111.1°109.5°
HN5N5HN5A120.0°120.0°
O3C27H27108.9°109.5°
O3C27H27A108.9°109.5°
C27O3HO3109.5°114.0°
H27C27H27A110.1°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N1C84N82C26171.9°179.9°
N1C84C81O2169.3°180.0°
N1C84C81N82178.4°179.9°
N1C84C81N59.4°0.0°
N1C84N82C26.4°0.0°
C84N1C1C27.3°0.0°
C84N1C1H1172.7°180.0°
C1N1C84C81173.0°180.0°
C1N1C84N828.4°0.0°
N1C1C2N823.3°0.0°
N1C1C2H1180.0°180.0°
N1C1C2C3176.2°180.0°
C21N3C24C20131.3°123.9°
C21N3C20C1660.6°66.2°
C21N3C20H20179.4°173.8°
C21N3C20H20A59.5°53.8°
N3C21C22H21120.0°120.0°
N3C21C22H21A120.0°120.0°
N3C21H21H21A119.9°120.1°
N3C21C22N455.1°58.4°
N3C21C22H2264.9°61.6°
N3C21C22H22A175.2°178.4°
C21N3C24C2360.0°59.3°
C21N3C24H2460.0°60.6°
C21N3C24H24A180.0°179.3°
C24N3C20C16170.3°170.0°
C24N3C20H2050.3°50.0°
C24N3C20H20A69.7°70.0°
C24N3C21C2258.5°59.3°
C24N3C21H21178.5°179.3°
C24N3C21H21A61.5°60.7°
N3C24C23H24120.0°119.9°
N3C24C23H24A120.0°120.0°
N3C24H24H24A119.9°120.0°
N3C24C23N457.7°58.4°
N3C24C23H23177.7°178.3°
N3C24C23H23A62.3°61.6°
N3C20C16C1537.4°100.0°
N3C20C16C17142.1°80.0°
N3C20C16H20120.0°120.0°
N3C20C16H20A120.0°120.0°
N3C20H20H20A118.1°120.0°
C20N3C21C22171.5°176.8°
C20N3C21H2151.6°56.8°
C20N3C21H21A68.5°63.2°
C20N3C24C23168.7°176.8°
C20N3C24H2471.3°63.3°
C20N3C24H24A48.7°56.8°
C4C5C6C10179.9°179.7°
C4C5C6C110.4°0.0°
C4C5C6C7179.4°180.0°
C4C5C10C9179.7°179.8°
C4C5C10H100.3°0.0°
C5C4C3C215.6°73.7°
C3C4C5C690.3°2.9°
C3C4C5C1089.9°176.8°
C4C3C2N82152.4°70.5°
C4C3C2C127.0°109.5°
C5C6C11C7179.8°179.9°
C5C6C7C80.5°0.0°
C5C6C7H7179.5°179.9°
C6C5C10C90.4°0.5°
C6C5C10H10179.6°179.7°
C5C6C11H1190.1°90.1°
C5C6C11H11A149.9°149.9°
C5C6C11H11B29.9°30.0°
C10C5C6C11179.5°179.7°
C10C5C6C70.7°0.3°
C5C10C9C80.0°0.5°
C5C10C9H10180.0°179.8°
C5C10C9C12180.0°179.7°
C11C6C7C8179.7°180.0°
C11C6C7H70.3°0.0°
C6C11H11H11A120.0°120.0°
C6C11H11H11B120.0°120.0°
C6C11H11AH11B120.0°120.0°
C6C7C8H7180.0°179.9°
C6C7C8C90.1°0.1°
C6C7C8H8180.0°180.0°
C7C6C11H1190.1°90.0°
C7C6C11H11A29.9°30.0°
C7C6C11H11B149.9°150.0°
C7C8C9H8180.0°180.0°
C7C8C9C100.2°0.2°
C7C8C9C12179.8°180.0°
H7C7C8C9179.9°180.0°
H7C7C8H80.1°0.0°
C8C9C10C12180.0°179.8°
C8C9C10H10180.0°179.8°
C8C9C12N28.2°0.0°
C8C9C12O1171.0°179.9°
H8C8C9C10179.8°179.8°
H8C8C9C120.2°0.0°
C10C9C12N2171.9°179.8°
C10C9C12O18.9°0.3°
H10C10C9C120.0°0.0°
N2C13C14C18179.6°179.8°
N2C13C14C15179.7°179.8°
N2C13C18C17179.8°180.0°
C13N2C12C9164.7°174.8°
C13N2C12HN2180.0°179.9°
C13N2C12O114.4°5.2°
N2C13C14H140.3°0.2°
N2C13C18H180.2°0.1°
C13C14C15H14180.0°180.0°
C13C14C15C160.2°0.0°
C13C14C15H15179.8°179.7°
C14C13C18C170.2°0.2°
C14C13N2C12167.8°32.9°
C14C13N2HN212.2°147.0°
C14C13C18H18179.8°179.7°
C18C13C14C150.0°0.1°
C13C18C17H18180.0°179.9°
C13C18C17C160.2°0.5°
C13C18C17C19179.9°180.0°
C18C13N2C1211.9°147.2°
C18C13N2HN2168.1°32.9°
C18C13C14H14180.0°179.9°
C14C15C16H15180.0°179.8°
C14C15C16C170.2°0.3°
C14C15C16C20179.7°179.8°
C15C16C17C180.0°0.5°
C15C16C17C20179.6°180.0°
C15C16C17C19179.7°180.0°
C15C16C20H2082.6°140.0°
C15C16C20H20A157.4°20.0°
C16C15C14H14179.8°180.0°
H15C15C16C17179.8°180.0°
H15C15C16C200.3°0.0°
H15C15C14H140.2°0.3°
C18C17C16C19179.7°179.5°
C18C17C16C20179.6°179.5°
C18C17C19F1110.0°119.6°
C18C17C19F28.6°0.5°
C18C17C19F3128.6°120.5°
C17C16C20H2097.9°40.0°
C17C16C20H20A22.1°160.0°
C16C17C18H18179.8°179.4°
C16C17C19F169.7°59.9°
C16C17C19F2171.7°180.0°
C16C17C19F351.7°60.0°
C19C17C16C200.2°0.0°
C19C17C18H180.1°0.1°
C17C19F1F2123.3°120.1°
C17C19F1F3121.0°120.0°
C17C19F2F3121.6°120.0°
C16C20H20H20A118.1°120.0°
C22C21H21H21A119.9°120.0°
C21C22N4H22120.0°119.9°
C21C22N4H22A120.0°120.0°
C21C22H22H22A119.0°120.0°
C21C22N4C2353.7°59.3°
C21C22N4C25177.7°176.8°
H21C21C22N4175.1°178.4°
H21C21C22H2255.1°58.4°
H21C21C22H22A64.9°61.7°
H21AC21C22N464.9°61.6°
H21AC21C22H22175.1°178.4°
H21AC21C22H22A55.1°58.3°
N4C22H22H22A119.1°120.1°
C22N4C23C2454.7°59.3°
C22N4C23C25127.0°123.9°
C22N4C23H23174.7°179.3°
C22N4C23H23A65.2°60.6°
C22N4C25C27172.2°75.5°
C22N4C25H2567.9°164.5°
C22N4C25H25A52.2°44.5°
H22C22N4C2366.3°60.6°
H22C22N4C2562.3°63.2°
H22AC22N4C23173.7°179.3°
H22AC22N4C2557.7°56.9°
C23C24H24H24A119.9°120.1°
C24C23N4H23120.0°120.0°
C24C23N4H23A120.0°119.9°
C24C23H23H23A119.3°120.0°
C24C23N4C25178.3°176.8°
H24C24C23N462.3°61.5°
H24C24C23H2357.7°58.4°
H24C24C23H23A177.6°178.5°
H24AC24C23N4177.7°178.4°
H24AC24C23H2362.3°61.6°
H24AC24C23H23A57.7°58.4°
N82C26H26H26A120.0°120.0°
N82C26H26H26B120.0°120.0°
N82C26H26AH26B120.0°120.0°
C26N82C84C819.4°0.1°
C26N82C84C2165.5°179.9°
C26N82C2C1168.2°179.9°
C26N82C2C312.3°0.0°
H26C26H26AH26B119.9°120.1°
H26C26N82C84180.0°90.1°
H26C26N82C217.3°90.0°
H26AC26N82C8460.0°150.0°
H26AC26N82C2137.3°29.9°
H26BC26N82C8460.0°30.0°
H26BC26N82C2102.6°149.9°
O2C81C84N5178.6°179.9°
O2C81C84N829.2°0.1°
O2C81N5HN50.0°179.9°
O2C81N5HN5A180.0°0.0°
C81C84N82C2174.9°180.0°
C84C81N5HN5178.6°0.0°
C84C81N5HN5A1.4°179.9°
N5C81C84N82172.2°180.0°
C81N5HN5HN5A180.0°179.9°
C84N82C2C11.8°0.0°
C84N82C2C3178.7°180.0°
N82C2C1C3179.5°180.0°
N82C2C1H1176.7°180.0°
H1C1C2C33.8°0.1°
C9C12N2O1179.1°180.0°
C9C12N2HN215.3°5.1°
H11C11H11AH11B120.0°120.0°
O1C12N2HN2165.6°174.9°
F1C19F2F3118.2°119.9°
N4C23H23H23A119.4°120.1°
C23N4C25C2745.3°160.6°
C23N4C25H25165.3°40.6°
C23N4C25H25A74.7°79.4°
H23C23N4C2558.3°56.8°
H23AC23N4C2561.7°63.3°
C27C25N4H25120.0°120.0°
C27C25N4H25A120.0°120.0°
C27C25H25H25A117.9°120.0°
C25C27O3H27120.0°120.0°
C25C27O3H27A120.0°120.0°
C25C27H27H27A119.3°120.0°
C25C27O3HO3180.0°180.0°
N4C25H25H25A117.9°120.0°
N4C25C27O380.2°65.3°
N4C25C27H2739.8°174.7°
N4C25C27H27A159.8°54.7°
H25C25C27O339.8°54.7°
H25C25C27H27159.8°65.3°
H25C25C27H27A80.2°174.7°
H25AC25C27O3159.8°174.7°
H25AC25C27H2780.2°54.7°
H25AC25C27H27A39.8°65.3°
O3C27H27H27A119.2°120.0°
H27C27O3HO360.0°60.0°
H27AC27O3HO360.0°60.0°

246704

PDB entries from 2025-12-24

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