XY1
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C | O | doub | 1.21Å | 1.22Å | |
C | C26 | sing | 1.48Å | 1.51Å | |
C | OXT | sing | 1.35Å | 1.70Å | |
C26 | C25 | sing | 1.40Å | 1.39Å | Aromatic |
C26 | C27 | doub | 1.40Å | 1.40Å | Aromatic |
C25 | C24 | doub | 1.37Å | 1.39Å | Aromatic |
C24 | C23 | sing | 1.40Å | 1.39Å | Aromatic |
C27 | C28 | sing | 1.37Å | 1.40Å | Aromatic |
C28 | C23 | doub | 1.40Å | 1.39Å | Aromatic |
C23 | N21 | sing | 1.37Å | 1.36Å | |
N21 | N20 | doub | 1.29Å | 1.30Å | |
N20 | C18 | sing | 1.36Å | 1.36Å | |
C18 | C17 | sing | 1.40Å | 1.38Å | Aromatic |
C18 | C19 | doub | 1.40Å | 1.38Å | Aromatic |
C17 | O22 | sing | 1.36Å | 1.36Å | |
C17 | C16 | doub | 1.39Å | 1.39Å | Aromatic |
C16 | C15 | sing | 1.38Å | 1.39Å | Aromatic |
C15 | C9 | doub | 1.39Å | 1.39Å | Aromatic |
C19 | C9 | sing | 1.38Å | 1.38Å | Aromatic |
C9 | C14 | sing | 1.51Å | 1.51Å | |
C14 | C12 | sing | 1.53Å | 1.52Å | |
C12 | N | sing | 1.47Å | 1.46Å | |
OXT | HXT | sing | 0.97Å | 0.95Å | |
C25 | H25 | sing | 1.08Å | 1.08Å | |
C27 | H27 | sing | 1.08Å | 1.08Å | |
C24 | H24 | sing | 1.08Å | 1.08Å | |
C28 | H28 | sing | 1.08Å | 1.08Å | |
C19 | H19 | sing | 1.08Å | 1.08Å | |
O22 | H22 | sing | 0.97Å | 0.95Å | |
C16 | H16 | sing | 1.08Å | 1.08Å | |
C15 | H15 | sing | 1.08Å | 1.08Å | |
C14 | H141 | sing | 1.09Å | 1.10Å | |
C14 | H142 | sing | 1.09Å | 1.10Å | |
C12 | H121 | sing | 1.09Å | 1.10Å | |
C12 | H122 | sing | 1.09Å | 1.10Å | |
N | H | sing | 1.01Å | 1.00Å | |
N | H2 | sing | 1.01Å | 1.00Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O | C | C26 | 119.9° | 120.0° |
O | C | OXT | 92.1° | 120.0° |
C26 | C | OXT | 118.3° | 120.0° |
C | C26 | C25 | 117.1° | 120.0° |
C | C26 | C27 | 123.9° | 120.0° |
C | OXT | HXT | 109.5° | 117.0° |
C25 | C26 | C27 | 119.0° | 120.0° |
C26 | C25 | C24 | 120.5° | 120.0° |
C26 | C25 | H25 | 119.7° | 120.0° |
C26 | C27 | C28 | 120.4° | 120.0° |
C26 | C27 | H27 | 119.8° | 120.0° |
C25 | C24 | C23 | 120.8° | 120.0° |
C24 | C25 | H25 | 119.7° | 120.1° |
C25 | C24 | H24 | 119.6° | 119.9° |
C24 | C23 | C28 | 119.6° | 120.0° |
C24 | C23 | N21 | 115.8° | 120.0° |
C23 | C24 | H24 | 119.6° | 120.0° |
C27 | C28 | C23 | 119.7° | 120.0° |
C28 | C27 | H27 | 119.8° | 120.0° |
C27 | C28 | H28 | 120.2° | 120.1° |
C28 | C23 | N21 | 124.6° | 120.1° |
C23 | C28 | H28 | 120.1° | 120.0° |
C23 | N21 | N20 | 111.5° | 120.0° |
N21 | N20 | C18 | 128.1° | 120.1° |
N20 | C18 | C17 | 123.6° | 120.2° |
N20 | C18 | C19 | 116.3° | 120.1° |
C17 | C18 | C19 | 120.1° | 119.6° |
C18 | C17 | O22 | 120.7° | 120.2° |
C18 | C17 | C16 | 119.3° | 119.7° |
C18 | C19 | C9 | 120.7° | 119.8° |
C18 | C19 | H19 | 119.7° | 120.1° |
O22 | C17 | C16 | 120.0° | 120.1° |
C17 | O22 | H22 | 109.5° | 114.1° |
C17 | C16 | C15 | 120.6° | 120.1° |
C17 | C16 | H16 | 119.7° | 120.0° |
C16 | C15 | C9 | 119.5° | 120.4° |
C15 | C16 | H16 | 119.7° | 119.9° |
C16 | C15 | H15 | 120.3° | 119.8° |
C15 | C9 | C19 | 119.9° | 120.4° |
C15 | C9 | C14 | 121.3° | 119.8° |
C9 | C15 | H15 | 120.2° | 119.8° |
C19 | C9 | C14 | 118.8° | 119.8° |
C9 | C19 | H19 | 119.7° | 120.0° |
C9 | C14 | C12 | 114.5° | 109.5° |
C9 | C14 | H141 | 108.2° | 109.4° |
C9 | C14 | H142 | 108.2° | 109.5° |
C14 | C12 | N | 101.8° | 109.5° |
C12 | C14 | H141 | 108.2° | 109.5° |
C12 | C14 | H142 | 108.2° | 109.4° |
C14 | C12 | H121 | 111.4° | 109.5° |
C14 | C12 | H122 | 111.3° | 109.5° |
N | C12 | H121 | 111.4° | 109.5° |
N | C12 | H122 | 111.4° | 109.5° |
C12 | N | H | 109.5° | 111.0° |
C12 | N | H2 | 109.5° | 111.0° |
H141 | C14 | H142 | 109.4° | 109.5° |
H121 | C12 | H122 | 109.5° | 109.4° |
H | N | H2 | 109.4° | 111.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O | C | C26 | OXT | 110.9° | 179.7° |
O | C | C26 | C25 | 157.7° | 0.0° |
O | C | C26 | C27 | 22.2° | 179.7° |
O | C | OXT | HXT | 0.0° | 0.0° |
C | C26 | C25 | C27 | 179.9° | 179.7° |
C | C26 | C25 | C24 | 179.6° | 180.0° |
C | C26 | C27 | C28 | 179.5° | 180.0° |
C26 | C | OXT | HXT | 125.8° | 179.8° |
C | C26 | C25 | H25 | 0.4° | 0.1° |
C | C26 | C27 | H27 | 0.5° | 0.1° |
OXT | C | C26 | C25 | 91.4° | 179.7° |
OXT | C | C26 | C27 | 88.6° | 0.0° |
C26 | C25 | C24 | H25 | 180.0° | 179.9° |
C26 | C25 | C24 | C23 | 0.4° | 0.0° |
C25 | C26 | C27 | C28 | 0.6° | 0.3° |
C25 | C26 | C27 | H27 | 179.4° | 179.8° |
C26 | C25 | C24 | H24 | 179.6° | 179.9° |
C27 | C26 | C25 | C24 | 0.5° | 0.3° |
C26 | C27 | C28 | H27 | 180.0° | 179.9° |
C26 | C27 | C28 | C23 | 0.5° | 0.0° |
C27 | C26 | C25 | H25 | 179.5° | 179.8° |
C26 | C27 | C28 | H28 | 179.5° | 180.0° |
C25 | C24 | C23 | H24 | 180.0° | 180.0° |
C25 | C24 | C23 | C28 | 0.3° | 0.3° |
C25 | C24 | C23 | N21 | 179.8° | 180.0° |
C24 | C23 | C28 | C27 | 0.4° | 0.3° |
C24 | C23 | C28 | N21 | 179.4° | 179.7° |
C24 | C23 | N21 | N20 | 0.4° | 180.0° |
C23 | C24 | C25 | H25 | 179.6° | 180.0° |
C24 | C23 | C28 | H28 | 179.6° | 179.8° |
C27 | C28 | C23 | H28 | 180.0° | 180.0° |
C27 | C28 | C23 | N21 | 179.8° | 180.0° |
C28 | C23 | N21 | N20 | 179.8° | 0.3° |
C23 | C28 | C27 | H27 | 179.5° | 180.0° |
C28 | C23 | C24 | H24 | 179.7° | 179.8° |
C23 | N21 | N20 | C18 | 179.6° | 180.0° |
N21 | C23 | C24 | H24 | 0.2° | 0.0° |
N21 | C23 | C28 | H28 | 0.2° | 0.0° |
N21 | N20 | C18 | C17 | 0.8° | 180.0° |
N21 | N20 | C18 | C19 | 179.5° | 0.3° |
N20 | C18 | C17 | C19 | 179.6° | 179.8° |
N20 | C18 | C17 | O22 | 0.6° | 0.1° |
N20 | C18 | C17 | C16 | 179.5° | 180.0° |
N20 | C18 | C19 | C9 | 179.9° | 179.7° |
N20 | C18 | C19 | H19 | 0.1° | 0.0° |
C18 | C17 | O22 | C16 | 179.9° | 179.9° |
C18 | C17 | C16 | C15 | 0.2° | 0.1° |
C17 | C18 | C19 | C9 | 0.3° | 0.5° |
C17 | C18 | C19 | H19 | 179.7° | 179.8° |
C18 | C17 | O22 | H22 | 180.0° | 89.9° |
C18 | C17 | C16 | H16 | 179.8° | 180.0° |
C19 | C18 | C17 | O22 | 179.7° | 179.7° |
C19 | C18 | C17 | C16 | 0.2° | 0.2° |
C18 | C19 | C9 | C15 | 0.7° | 0.6° |
C18 | C19 | C9 | H19 | 180.0° | 179.7° |
C18 | C19 | C9 | C14 | 178.9° | 179.7° |
O22 | C17 | C16 | C15 | 179.7° | 179.9° |
O22 | C17 | C16 | H16 | 0.3° | 0.1° |
C17 | C16 | C15 | H16 | 180.0° | 179.9° |
C17 | C16 | C15 | C9 | 0.3° | 0.0° |
C16 | C17 | O22 | H22 | 0.1° | 89.9° |
C17 | C16 | C15 | H15 | 179.7° | 179.9° |
C16 | C15 | C9 | H15 | 180.0° | 179.9° |
C16 | C15 | C9 | C19 | 0.7° | 0.3° |
C16 | C15 | C9 | C14 | 178.8° | 180.0° |
C15 | C9 | C19 | C14 | 178.1° | 179.7° |
C15 | C9 | C14 | C12 | 76.7° | 90.0° |
C15 | C9 | C19 | H19 | 179.3° | 179.7° |
C9 | C15 | C16 | H16 | 179.7° | 179.9° |
C15 | C9 | C14 | H141 | 162.5° | 150.0° |
C15 | C9 | C14 | H142 | 44.1° | 30.0° |
C19 | C9 | C14 | C12 | 105.2° | 89.8° |
C19 | C9 | C15 | H15 | 179.3° | 179.8° |
C19 | C9 | C14 | H141 | 15.6° | 30.3° |
C19 | C9 | C14 | H142 | 134.1° | 150.3° |
C9 | C14 | C12 | H141 | 120.8° | 120.0° |
C9 | C14 | C12 | H142 | 120.8° | 120.0° |
C9 | C14 | C12 | N | 166.4° | 180.0° |
C14 | C9 | C19 | H19 | 1.1° | 0.0° |
C14 | C9 | C15 | H15 | 1.2° | 0.0° |
C9 | C14 | H141 | H142 | 117.7° | 120.0° |
C9 | C14 | C12 | H121 | 74.8° | 59.9° |
C9 | C14 | C12 | H122 | 47.7° | 60.0° |
C14 | C12 | N | H121 | 118.8° | 120.1° |
C14 | C12 | N | H122 | 118.7° | 120.0° |
C12 | C14 | H141 | H142 | 117.7° | 120.0° |
C14 | C12 | H121 | H122 | 123.6° | 120.0° |
C14 | C12 | N | H | 180.0° | 56.0° |
C14 | C12 | N | H2 | 60.0° | 180.0° |
N | C12 | C14 | H141 | 45.7° | 60.0° |
N | C12 | C14 | H142 | 72.8° | 60.0° |
N | C12 | H121 | H122 | 123.6° | 120.0° |
C12 | N | H | H2 | 120.0° | 124.0° |
H25 | C25 | C24 | H24 | 0.4° | 0.0° |
H27 | C27 | C28 | H28 | 0.6° | 0.0° |
H16 | C16 | C15 | H15 | 0.3° | 0.0° |
H141 | C14 | C12 | H121 | 164.4° | 179.9° |
H141 | C14 | C12 | H122 | 73.1° | 60.0° |
H142 | C14 | C12 | H121 | 46.0° | 60.0° |
H142 | C14 | C12 | H122 | 168.4° | 180.0° |
H121 | C12 | N | H | 61.2° | 64.0° |
H121 | C12 | N | H2 | 178.8° | 60.0° |
H122 | C12 | N | H | 61.3° | 176.1° |
H122 | C12 | N | H2 | 58.8° | 60.0° |