Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

XX5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O1C2doub1.23Å1.22Å
C2O3sing1.36Å1.22Å
C2C4sing1.52Å1.55Å
C4C5sing1.54Å1.54Å
C4N9sing1.44Å1.47Å
C4HC4sing1.10Å1.12Å
C5C6sing1.55Å1.52Å
C5HC51sing1.10Å1.12Å
C5HC52sing1.10Å1.12Å
C6C7sing1.53Å1.51Å
C6C8sing1.53Å1.53Å
C6HC6sing1.10Å1.12Å
C7HC71sing1.09Å1.12Å
C7HC72sing1.10Å1.11Å
C7HC73sing1.10Å1.12Å
C8HC81sing1.10Å1.12Å
C8HC82sing1.09Å1.11Å
C8HC83sing1.10Å1.12Å
N9C10sing1.46Å1.47Å
N9HN9sing1.03Å1.02Å
C10C11sing1.52Å1.56Å
C10C14sing1.53Å1.55Å
C10H10sing1.10Å1.12Å
C11O12sing1.35Å1.23Å
C11O13doub1.23Å1.22Å
O12H12sing0.98Å0.95Å
C14C15sing1.51Å1.52Å
C14H141sing1.10Å1.11Å
C14H142sing1.10Å1.11Å
C15C16doub1.35Å1.41ÅAromatic
C15N19sing1.35Å1.40ÅAromatic
C16N17sing1.37Å1.33ÅAromatic
C16H16sing1.08Å1.10Å
N17C18doub1.31Å1.35ÅAromatic
C18N19sing1.37Å1.34ÅAromatic
C18H18sing1.08Å1.10Å
N19C20sing1.44Å1.53Å
C20C21sing1.50Å1.56Å
C20H201sing1.10Å1.12Å
C20H202sing1.10Å1.11Å
C21C22doub1.39Å1.43ÅAromatic
C21C26sing1.39Å1.45ÅAromatic
C22C23sing1.40Å1.45ÅAromatic
C22H22sing1.09Å1.10Å
C23CL24sing1.72Å1.78Å
C23C25doub1.39Å1.42ÅAromatic
C25C27sing1.40Å1.41ÅAromatic
C25H25sing1.09Å1.10Å
C26C27doub1.39Å1.46ÅAromatic
C26H26sing1.09Å1.10Å
C27CL28sing1.72Å1.80Å
HO1O3sing0.98Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1C2O3120.9°122.3°
O1C2C4118.8°123.1°
O3C2C4120.3°114.5°
C2O3HO1109.5°115.1°
C2C4C5116.5°113.0°
C2C4N9113.5°113.2°
C2C4HC4100.6°105.4°
C5C4N9107.3°112.3°
C5C4HC4107.7°108.1°
C4C5C6121.5°117.7°
C4C5HC51107.9°107.3°
C4C5HC52107.9°108.9°
N9C4HC4111.0°104.1°
C4N9C10115.4°111.6°
C4N9HN9110.1°110.0°
C6C5HC51107.9°107.2°
C6C5HC52107.9°109.2°
C5C6C7107.5°109.2°
C5C6C8111.5°113.9°
C5C6HC6108.6°109.1°
HC51C5HC52101.9°105.9°
C7C6C8106.9°109.4°
C7C6HC6113.1°107.0°
C6C7HC71112.9°110.9°
C6C7HC72107.5°111.2°
C6C7HC73112.9°110.9°
C8C6HC6109.3°108.0°
C6C8HC81111.5°111.4°
C6C8HC82111.5°111.1°
C6C8HC83111.5°111.0°
HC71C7HC72112.9°108.1°
HC71C7HC7397.5°107.6°
HC72C7HC73113.0°108.0°
HC81C8HC82111.5°108.7°
HC81C8HC8398.9°107.8°
HC82C8HC83111.5°106.6°
C10N9HN9110.1°108.4°
N9C10C11115.5°111.1°
N9C10C14110.3°111.2°
N9C10H10104.8°106.2°
C11C10C14110.0°109.9°
C11C10H10105.1°106.9°
C10C11O12117.8°114.8°
C10C11O13120.0°123.0°
C14C10H10110.9°111.4°
C10C14C15109.8°113.0°
C10C14H141112.1°110.4°
C10C14H142112.1°110.1°
O12C11O13122.2°122.2°
C11O12H12117.9°114.8°
C15C14H141112.1°108.1°
C15C14H142112.1°109.8°
C14C15C16124.9°130.5°
C14C15N19125.3°122.3°
H141C14H14298.3°105.2°
C16C15N19109.9°107.3°
C15C16N17106.9°110.0°
C15C16H16128.9°128.9°
C15N19C18101.6°106.2°
C15N19C20129.0°128.2°
N17C16H16124.3°121.1°
C16N17C18106.6°104.7°
N17C18N19115.1°111.8°
N17C18H18122.8°125.7°
N19C18H18122.0°122.5°
C18N19C20129.4°125.6°
N19C20C21121.8°111.4°
N19C20H201107.8°108.2°
N19C20H202107.8°108.2°
C21C20H201107.8°111.2°
C21C20H202107.8°111.2°
C20C21C22120.1°119.5°
C20C21C26123.0°119.6°
H201C20H202102.0°106.5°
C22C21C26116.9°120.9°
C21C22C23120.9°119.5°
C21C22H22118.9°120.2°
C21C26C27121.9°119.6°
C21C26H26118.7°120.2°
C23C22H22120.2°120.2°
C22C23CL24121.2°120.0°
C22C23C25121.2°120.0°
CL24C23C25117.6°120.0°
C23C25C27119.6°120.0°
C23C25H25120.6°120.0°
C27C25H25119.8°120.0°
C25C27C26119.5°120.0°
C25C27CL28118.3°120.0°
C27C26H26119.4°120.3°
C26C27CL28122.2°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1C2O3C4179.7°177.4°
O1C2C4C598.3°92.2°
O1C2C4N9136.3°36.8°
O1C2C4HC417.6°150.0°
O1C2O3HO10.0°0.0°
O3C2C4C581.9°85.2°
O3C2C4N943.4°145.8°
O3C2C4HC4162.1°32.6°
C2C4C5N9128.5°129.5°
C2C4C5HC4111.9°116.3°
C2C4N9HC4112.4°114.0°
C2C4C5C63.1°179.1°
C2C4C5HC51122.1°60.0°
C2C4C5HC52128.4°54.2°
C2C4N9C1086.4°60.4°
C2C4N9HN9148.4°60.0°
C4C2O3HO1179.7°177.4°
C5C4N9HC4117.4°116.7°
C4C5C6HC51125.3°120.9°
C4C5C6HC52125.2°124.8°
C4C5HC51HC52113.5°116.2°
C4C5C6C7176.5°59.1°
C4C5C6C866.6°63.5°
C4C5C6HC653.8°175.8°
C5C4N9C10143.5°170.3°
C5C4N9HN918.2°69.3°
N9C4C5C6131.6°51.4°
N9C4C5HC516.3°69.4°
N9C4C5HC52103.1°176.3°
C4N9C10HN9125.3°121.3°
C4N9C10C1147.7°58.6°
C4N9C10C14173.2°178.6°
C4N9C10H1067.4°57.3°
HC4C4C5C6108.8°62.9°
HC4C4C5HC51125.9°176.3°
HC4C4C5HC5216.5°62.1°
HC4C4N9C1026.1°53.6°
HC4C4N9HN999.2°174.0°
C6C5HC51HC52113.5°116.5°
C5C6C7C8119.8°125.2°
C5C6C7HC6119.9°118.0°
C5C6C8HC6120.0°121.4°
C5C6C7HC7154.7°57.2°
C5C6C7HC72180.0°63.2°
C5C6C7HC7354.7°176.6°
C5C6C8HC8154.7°50.4°
C5C6C8HC82180.0°71.0°
C5C6C8HC8354.7°170.6°
HC51C5C6C751.2°180.0°
HC51C5C6C8168.1°57.4°
HC51C5C6HC671.5°63.3°
HC52C5C6C758.2°65.7°
HC52C5C6C858.6°171.7°
HC52C5C6HC6179.0°51.0°
C7C6C8HC6122.7°116.1°
C6C7HC71HC72122.3°122.2°
C6C7HC71HC73118.8°121.4°
C6C7HC72HC73125.3°121.9°
C7C6C8HC8162.5°72.0°
C7C6C8HC8262.8°166.6°
C7C6C8HC83172.0°48.2°
C8C6C7HC71174.6°177.6°
C8C6C7HC7260.2°62.1°
C8C6C7HC7365.1°58.1°
C6C8HC81HC82125.3°122.8°
C6C8HC81HC83117.3°122.0°
C6C8HC82HC83125.3°121.0°
HC6C6C7HC7165.2°60.8°
HC6C6C7HC7260.1°178.8°
HC6C6C7HC73174.6°58.6°
HC6C6C8HC81174.7°171.8°
HC6C6C8HC8260.0°50.4°
HC6C6C8HC8365.3°68.0°
HC71C7HC72HC73109.5°116.1°
HC81C8HC82HC83109.5°116.0°
N9C10C11C14125.7°123.5°
N9C10C11H10114.9°115.5°
N9C10C14H10115.6°118.2°
N9C10C11O12111.1°115.1°
N9C10C11O1369.4°64.5°
N9C10C14C15171.5°158.2°
N9C10C14H14163.2°37.1°
N9C10C14H14246.3°78.7°
HN9N9C10C1177.7°180.0°
HN9N9C10C1447.9°57.2°
HN9N9C10H10167.3°64.1°
C11C10C14H10115.8°118.3°
C10C11O12O13179.5°179.6°
C10C11O12H12180.0°179.6°
C11C10C14C1559.9°78.3°
C11C10C14H14165.4°160.6°
C11C10C14H142174.9°44.8°
C14C10C11O12123.2°121.4°
C14C10C11O1356.3°59.0°
C10C14C15H141125.3°122.4°
C10C14C15H142125.3°123.4°
C10C14H141H142118.0°118.8°
C10C14C15C1653.7°90.1°
C10C14C15N19126.0°90.0°
H10C10C11O123.8°0.4°
H10C10C11O13175.7°180.0°
H10C10C14C1555.9°40.0°
H10C10C14H141178.8°81.1°
H10C10C14H14269.3°163.1°
O13C11O12H120.5°0.0°
C15C14H141H142118.0°117.2°
C14C15C16N19179.7°179.9°
C14C15C16N17179.5°179.9°
C14C15C16H160.5°0.0°
C14C15N19C18179.5°180.0°
C14C15N19C200.4°0.0°
H141C14C15C16178.9°147.5°
H141C14C15N190.7°32.4°
H142C14C15C1671.6°33.2°
H142C14C15N19108.7°146.7°
C15C16N17H16180.0°179.9°
C15C16N17C180.1°0.0°
C16C15N19C180.2°0.0°
C16C15N19C20179.9°180.0°
N19C15C16N170.2°0.0°
N19C15C16H16179.8°179.9°
C15N19C18N170.2°0.0°
C15N19C18C20179.8°180.0°
C15N19C18H18179.8°180.0°
C15N19C20C2179.1°90.0°
C15N19C20H201155.7°32.5°
C15N19C20H20246.2°147.5°
C16N17C18N190.0°0.0°
C16N17C18H18180.0°180.0°
H16C16N17C18179.9°180.0°
N17C18N19H18180.0°180.0°
N17C18N19C20180.0°179.9°
C18N19C20C21101.1°90.0°
C18N19C20H20124.1°147.5°
C18N19C20H202133.6°32.5°
H18C18N19C200.0°0.0°
N19C20C21H201125.2°120.8°
N19C20C21H202125.3°120.8°
N19C20H201H202113.4°116.1°
N19C20C21C2229.0°45.0°
N19C20C21C26150.9°135.1°
C21C20H201H202113.4°121.2°
C20C21C22C26179.9°179.9°
C20C21C22C23180.0°179.9°
C20C21C22H220.1°0.0°
C20C21C26C27179.9°179.9°
C20C21C26H260.1°0.1°
H201C20C21C2296.3°165.8°
H201C20C21C2683.8°14.3°
H202C20C21C22154.2°75.8°
H202C20C21C2625.7°104.1°
C21C22C23H22180.0°180.0°
C21C22C23CL24179.9°180.0°
C21C22C23C250.1°0.0°
C22C21C26C270.0°0.0°
C22C21C26H26180.0°180.0°
C26C21C22C230.1°0.0°
C26C21C22H22180.0°180.0°
C21C26C27C250.1°0.0°
C21C26C27H26180.0°179.9°
C21C26C27CL28179.8°179.9°
C22C23CL24C25179.8°180.0°
C22C23C25C270.1°0.0°
C22C23C25H25179.9°180.0°
H22C22C23CL240.1°0.1°
H22C22C23C25179.9°180.0°
CL24C23C25C27179.9°180.0°
CL24C23C25H250.1°0.0°
C23C25C27H25180.0°180.0°
C23C25C27C260.0°0.0°
C23C25C27CL28179.9°179.9°
C25C27C26CL28179.9°179.9°
C25C27C26H26179.9°180.0°
H25C25C27C26180.0°180.0°
H25C25C27CL280.1°0.1°
H26C26C27CL280.2°0.1°

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon