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Summary Geometry Related PDB entries

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Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C2	sing	1.51Å	1.61Å
C1	O1	sing	1.43Å	1.45Å
C1	H11	sing	1.09Å	1.11Å
C1	H12	sing	1.09Å	1.12Å
C2	C3	sing	1.51Å	1.52Å
C2	O2	doub	1.21Å	1.26Å
C3	C4	sing	1.53Å	1.53Å
C3	O3	sing	1.43Å	1.44Å
C3	H3	sing	1.09Å	1.12Å
C4	C5	sing	1.53Å	1.55Å
C4	O4	sing	1.43Å	1.40Å
C4	H4	sing	1.09Å	1.12Å
C5	O5	sing	1.43Å	1.44Å
C5	H51	sing	1.09Å	1.11Å
C5	H52	sing	1.09Å	1.12Å
O1	HO1	sing	0.97Å	0.95Å
O3	HO3	sing	0.97Å	0.95Å
O4	HO4	sing	0.97Å	0.95Å
O5	HO5	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	C1	O1	104.9°	109.5°
C2	C1	H11	113.9°	109.4°
C2	C1	H12	113.9°	109.5°
C1	C2	C3	115.1°	120.0°
C1	C2	O2	123.4°	120.0°
O1	C1	H11	114.0°	109.4°
O1	C1	H12	113.9°	109.5°
C1	O1	HO1	104.9°	106.9°
H11	C1	H12	96.5°	109.5°
C3	C2	O2	121.1°	120.0°
C2	C3	C4	110.5°	109.5°
C2	C3	O3	107.9°	109.5°
C2	C3	H3	110.2°	109.5°
C4	C3	O3	110.5°	109.4°
C4	C3	H3	107.5°	109.4°
C3	C4	C5	110.2°	109.6°
C3	C4	O4	113.6°	109.5°
C3	C4	H4	104.3°	109.5°
O3	C3	H3	110.2°	109.5°
C3	O3	HO3	107.8°	106.8°
C5	C4	O4	103.2°	109.4°
C5	C4	H4	114.5°	109.4°
C4	C5	O5	111.1°	109.6°
C4	C5	H51	111.6°	109.5°
C4	C5	H52	111.6°	109.5°
O4	C4	H4	111.3°	109.4°
C4	O4	HO4	113.5°	106.8°
O5	C5	H51	111.6°	109.4°
O5	C5	H52	111.5°	109.5°
C5	O5	HO5	111.1°	106.9°
H51	C5	H52	98.8°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	C1	O1	H11	125.3°	119.9°
C2	C1	O1	H12	125.3°	120.0°
C2	C1	H11	H12	119.8°	120.0°
C1	C2	C3	O2	173.1°	179.9°
C1	C2	C3	C4	141.0°	90.0°
C1	C2	C3	O3	98.1°	150.0°
C1	C2	C3	H3	22.3°	30.0°
C2	C1	O1	HO1	180.0°	180.0°
O1	C1	H11	H12	119.8°	120.0°
O1	C1	C2	C3	176.8°	179.9°
O1	C1	C2	O2	3.9°	0.0°
H11	C1	C2	C3	57.9°	60.0°
H11	C1	C2	O2	129.2°	119.9°
H11	C1	O1	HO1	54.7°	60.1°
H12	C1	C2	C3	51.5°	60.0°
H12	C1	C2	O2	121.4°	120.1°
H12	C1	O1	HO1	54.7°	60.0°
C2	C3	C4	O3	119.3°	120.0°
C2	C3	C4	H3	120.3°	120.1°
C2	C3	O3	H3	120.4°	120.1°
C2	C3	C4	C5	170.1°	180.0°
C2	C3	C4	O4	74.7°	59.9°
C2	C3	C4	H4	46.7°	60.0°
C2	C3	O3	HO3	180.0°	59.9°
O2	C2	C3	C4	32.0°	90.0°
O2	C2	C3	O3	88.9°	29.9°
O2	C2	C3	H3	150.8°	150.0°
C4	C3	O3	H3	118.7°	119.9°
C3	C4	C5	O4	121.6°	120.1°
C3	C4	C5	H4	117.3°	120.1°
C3	C4	O4	H4	117.4°	120.0°
C3	C4	C5	O5	58.7°	180.0°
C3	C4	C5	H51	66.6°	60.0°
C3	C4	C5	H52	176.1°	59.9°
C4	C3	O3	HO3	59.0°	60.1°
C3	C4	O4	HO4	180.0°	60.1°
O3	C3	C4	C5	70.6°	60.0°
O3	C3	C4	O4	44.7°	60.0°
O3	C3	C4	H4	166.0°	180.0°
H3	C3	C4	C5	49.7°	60.0°
H3	C3	C4	O4	165.0°	180.0°
H3	C3	C4	H4	73.6°	60.1°
H3	C3	O3	HO3	59.7°	180.0°
C5	C4	O4	H4	123.2°	119.9°
C4	C5	O5	H51	125.3°	120.1°
C4	C5	O5	H52	125.3°	120.1°
C4	C5	H51	H52	117.6°	120.0°
C5	C4	O4	HO4	60.6°	60.1°
C4	C5	O5	HO5	180.0°	180.0°
O4	C4	C5	O5	179.7°	60.0°
O4	C4	C5	H51	55.1°	60.1°
O4	C4	C5	H52	54.5°	180.0°
H4	C4	C5	O5	58.6°	59.9°
H4	C4	C5	H51	176.2°	179.9°
H4	C4	C5	H52	66.6°	60.2°
H4	C4	O4	HO4	62.6°	179.9°
O5	C5	H51	H52	117.4°	119.9°
H51	C5	O5	HO5	54.7°	60.0°
H52	C5	O5	HO5	54.7°	59.9°

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