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SummaryGeometryRelated PDB entries

XT0

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
NAACACtrip1.14Å1.18Å
CACCAVsing1.43Å1.36Å
CAICAHdoub1.38Å1.42ÅAromatic
CAICAXsing1.39Å1.36ÅAromatic
CAVCAFdoub1.40Å1.39ÅAromatic
CAVCAYsing1.40Å1.39ÅAromatic
CAFCADsing1.38Å1.40ÅAromatic
OASCAYsing1.36Å1.41Å
OASCAXsing1.36Å1.36Å
CAYCAGdoub1.39Å1.40ÅAromatic
CAHCAUsing1.38Å1.40ÅAromatic
CAXCATdoub1.39Å1.42ÅAromatic
CADCAEdoub1.39Å1.39ÅAromatic
CAGCAEsing1.38Å1.39ÅAromatic
NARNAQdoub1.29Å1.37ÅAromatic
NARNBAsing1.29Å1.40ÅAromatic
NAQCAWsing1.34Å1.30ÅAromatic
CAUCAPsing1.51Å1.37Å
CAUCAJdoub1.38Å1.38ÅAromatic
CATCAJsing1.39Å1.41ÅAromatic
CATOABsing1.36Å1.37Å
CAPNBAsing1.47Å1.49Å
NBACAKsing1.35Å1.32ÅAromatic
CAWCAKdoub1.35Å1.35ÅAromatic
CAWCAZsing1.51Å1.40Å
CAOCAZsing1.55Å1.37Å
CAOCAMsing1.55Å1.62Å
CAZCANsing1.54Å1.51Å
CAMCALsing1.54Å1.64Å
CANCALsing1.54Å1.58Å
CAFH1sing1.08Å1.08Å
CADH2sing1.08Å1.08Å
CAEH3sing1.08Å1.08Å
CAGH4sing1.08Å1.08Å
CAJH5sing1.08Å1.08Å
OABH6sing0.97Å0.95Å
CAIH7sing1.08Å1.08Å
CAHH8sing1.08Å1.08Å
CAPH9sing1.09Å1.10Å
CAPH10sing1.09Å1.10Å
CAKH11sing1.08Å1.08Å
CAZH12sing1.09Å1.10Å
CANH13sing1.09Å1.10Å
CANH14sing1.09Å1.10Å
CALH15sing1.09Å1.10Å
CALH16sing1.09Å1.10Å
CAMH17sing1.09Å1.10Å
CAMH18sing1.09Å1.10Å
CAOH19sing1.09Å1.10Å
CAOH20sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
NAACACCAV179.5°180.0°
CACCAVCAF117.5°120.2°
CACCAVCAY120.9°120.2°
CAHCAICAX121.1°119.9°
CAICAHCAU119.5°120.2°
CAHCAIH7119.4°120.1°
CAICAHH8120.2°119.9°
CAICAXOAS122.8°120.1°
CAICAXCAT119.2°119.8°
CAXCAIH7119.5°120.0°
CAFCAVCAY121.5°119.6°
CAVCAFCAD121.3°119.9°
CAVCAFH1119.4°120.0°
CAVCAYOAS116.3°120.2°
CAVCAYCAG117.8°119.7°
CAFCADCAE116.2°120.3°
CADCAFH1119.4°120.1°
CAFCADH2121.9°119.8°
CAYOASCAX112.9°118.0°
OASCAYCAG125.6°120.2°
OASCAXCAT118.0°120.1°
CAYCAGCAE119.7°120.1°
CAYCAGH4120.1°119.9°
CAHCAUCAP118.9°119.9°
CAHCAUCAJ119.9°120.2°
CAUCAHH8120.2°119.9°
CAXCATCAJ120.1°119.9°
CAXCATOAB115.6°120.0°
CADCAECAG123.4°120.4°
CAECADH2121.9°119.9°
CADCAEH3118.3°119.8°
CAGCAEH3118.3°119.8°
CAECAGH4120.2°119.9°
NAQNARNBA109.7°110.1°
NARNAQCAW103.2°108.9°
NARNBACAP121.9°125.8°
NARNBACAK105.8°108.3°
NAQCAWCAK113.9°106.5°
NAQCAWCAZ114.8°126.8°
CAPCAUCAJ121.0°119.9°
CAUCAPNBA112.9°109.5°
CAUCAPH9108.6°109.5°
CAUCAPH10108.6°109.5°
CAUCAJCAT120.0°120.0°
CAUCAJH5120.0°120.1°
CAJCATOAB124.1°120.1°
CATCAJH5120.0°120.0°
CATOABH6109.5°114.0°
CAPNBACAK132.1°125.9°
NBACAPH9108.6°109.5°
NBACAPH10108.6°109.5°
NBACAKCAW106.5°106.2°
NBACAKH11126.7°126.9°
CAKCAWCAZ127.9°126.7°
CAWCAKH11126.8°126.9°
CAWCAZCAO124.1°110.5°
CAWCAZCAN120.8°110.5°
CAWCAZH12100.5°110.4°
CAZCAOCAM91.3°102.7°
CAOCAZCAN105.7°104.2°
CAOCAZH12100.6°110.6°
CAZCAOH19113.8°110.7°
CAZCAOH20113.8°110.7°
CAOCAMCAL109.3°104.2°
CAOCAMH17109.5°110.4°
CAOCAMH18109.5°110.6°
CAMCAOH19113.8°110.7°
CAMCAOH20113.8°110.8°
CAZCANCAL95.3°106.6°
CANCAZH1299.6°110.4°
CAZCANH13112.9°110.0°
CAZCANH14112.9°110.1°
CAMCALCAN93.8°106.6°
CAMCALH15113.2°110.1°
CAMCALH16113.2°110.1°
CALCAMH17109.5°110.5°
CALCAMH18109.5°110.5°
CALCANH13112.9°110.0°
CALCANH14112.9°110.1°
CANCALH15113.2°110.0°
CANCALH16113.2°110.0°
H9CAPH10109.5°109.4°
H13CANH14109.5°110.0°
H15CALH16109.5°110.0°
H17CAMH18109.5°110.5°
H19CAOH20109.5°110.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
NAACACCAVCAF167.2°91.4°
NAACACCAVCAY15.9°88.2°
CACCAVCAFCAY176.9°179.7°
CACCAVCAFCAD179.1°180.0°
CACCAVCAYOAS4.5°0.0°
CACCAVCAYCAG179.1°179.8°
CACCAVCAFH11.0°0.1°
CAHCAICAXH7180.0°180.0°
CAHCAICAXOAS179.2°180.0°
CAICAHCAUH8180.0°179.9°
CAHCAICAXCAT0.7°0.3°
CAICAHCAUCAP179.5°180.0°
CAICAHCAUCAJ4.8°0.3°
CAICAXOASCAY96.0°94.3°
CAICAXOASCAT179.9°179.7°
CAXCAICAHCAU4.6°0.0°
CAICAXCATCAJ2.8°0.3°
CAICAXCATOAB178.7°179.8°
CAXCAICAHH8175.4°179.9°
CAVCAFCADH1180.0°179.9°
CAFCAVCAYOAS178.7°179.7°
CAFCAVCAYCAG4.1°0.6°
CAVCAFCADCAE1.1°0.0°
CAVCAFCADH2178.9°179.9°
CAYCAVCAFCAD4.0°0.3°
CAVCAYOASCAG174.1°179.8°
CAVCAYOASCAX177.4°175.0°
CAVCAYCAGCAE1.5°0.5°
CAYCAVCAFH1176.0°179.8°
CAVCAYCAGH4178.5°179.7°
CAFCADCAEH2180.0°180.0°
CAFCADCAECAG1.5°0.0°
CAFCADCAEH3178.5°180.0°
CAYOASCAXCAT84.1°86.0°
OASCAYCAGCAE175.5°179.7°
OASCAYCAGH44.5°0.1°
CAXOASCAYCAG3.3°5.2°
OASCAXCATCAJ177.3°180.0°
OASCAXCATOAB1.4°0.1°
OASCAXCAIH70.9°0.0°
CAYCAGCAECAD1.3°0.2°
CAYCAGCAEH4180.0°179.8°
CAYCAGCAEH3178.7°179.7°
CAHCAUCAPCAJ174.6°179.7°
CAHCAUCAJCAT1.4°0.3°
CAHCAUCAPNBA77.0°90.0°
CAHCAUCAJH5178.6°179.8°
CAUCAHCAIH7175.4°180.0°
CAHCAUCAPH9162.5°150.0°
CAHCAUCAPH1043.5°30.0°
CAXCATCAJCAU2.5°0.0°
CAXCATCAJOAB175.5°180.0°
CAXCATCAJH5177.5°179.9°
CAXCATOABH6180.0°90.0°
CATCAXCAIH7179.2°179.7°
CADCAECAGH3180.0°180.0°
CAECADCAFH1178.9°179.9°
CADCAECAGH4178.7°180.0°
CAGCAECADH2178.5°179.9°
NAQNARNBACAP178.6°180.0°
NAQNARNBACAK3.4°0.2°
NARNAQCAWCAK7.5°0.0°
NARNAQCAWCAZ168.3°180.0°
NBANARNAQCAW2.3°0.1°
NARNBACAPCAU81.5°55.2°
NARNBACAPCAK173.8°179.8°
NARNBACAKCAW7.5°0.2°
NARNBACAPH9158.0°175.3°
NARNBACAPH1039.1°64.8°
NARNBACAKH11172.5°179.7°
NAQCAWCAKNBA9.9°0.1°
NAQCAWCAKCAZ157.9°180.0°
NAQCAWCAZCAO47.8°150.2°
NAQCAWCAZCAN170.7°95.0°
NAQCAWCAKH11170.1°179.8°
NAQCAWCAZH1262.8°27.5°
CAPCAUCAJCAT176.0°180.0°
CAUCAPNBAH9120.5°120.0°
CAUCAPNBAH10120.5°120.0°
CAUCAPNBACAK104.7°125.0°
CAPCAUCAJH54.0°0.1°
CAPCAUCAHH80.5°0.0°
CAUCAPH9H10118.5°120.0°
CAUCAJCATH5180.0°179.9°
CAUCAJCATOAB178.0°180.0°
CAJCAUCAPNBA108.4°90.3°
CAJCAUCAHH8175.2°179.7°
CAJCAUCAPH912.1°29.7°
CAJCAUCAPH10131.1°149.7°
CAJCATOABH64.3°90.0°
OABCATCAJH52.0°0.1°
CAPNBACAKCAW178.0°180.0°
NBACAPH9H10118.4°120.0°
CAPNBACAKH112.0°0.1°
NBACAKCAWH11180.0°180.0°
NBACAKCAWCAZ167.8°179.9°
CAKNBACAPH915.8°4.9°
CAKNBACAPH10134.7°115.0°
CAKCAWCAZCAO154.6°29.8°
CAKCAWCAZCAN13.1°85.0°
CAKCAWCAZH1294.9°152.5°
CAWCAZCAOCAN146.2°118.7°
CAWCAZCAOH12110.5°122.6°
CAWCAZCAOCAM156.2°156.7°
CAWCAZCANH12108.4°122.5°
CAWCAZCANCAL140.6°142.3°
CAZCAWCAKH1112.2°0.2°
CAWCAZCANH13101.8°23.1°
CAWCAZCANH1423.0°98.4°
CAWCAZCAOH1939.4°85.1°
CAWCAZCAOH2087.0°38.3°
CAZCAOCAMH19116.8°118.2°
CAZCAOCAMH20116.8°118.3°
CAOCAZCANH12104.0°118.8°
CAZCAOCAMCAL25.3°38.0°
CAOCAZCANCAL71.8°23.6°
CAOCAZCANH1345.8°95.7°
CAOCAZCANH14170.7°142.9°
CAZCAOCAMH1794.7°156.6°
CAZCAOCAMH18145.2°80.8°
CAZCAOH19H20128.6°123.3°
CAMCAOCAZCAN57.5°37.9°
CAOCAMCALH17120.0°118.6°
CAOCAMCALH18120.0°118.8°
CAOCAMCALCAN12.6°23.7°
CAMCAOCAZH1245.7°80.8°
CAOCAMCALH15104.8°95.6°
CAOCAMCALH16129.9°142.9°
CAOCAMH17H18120.1°122.7°
CAMCAOH19H20128.6°123.4°
CAZCANCALCAM41.6°0.1°
CAZCANCALH13117.6°119.2°
CAZCANCALH14117.6°119.3°
CAZCANH13H14126.6°121.5°
CAZCANCALH1575.7°119.3°
CAZCANCALH16158.9°119.4°
CANCAZCAOH19174.4°156.2°
CANCAZCAOH2059.3°80.4°
CAMCALCANH15117.3°119.4°
CAMCALCANH16117.3°119.3°
CAMCALCANH1376.0°119.3°
CAMCALCANH14159.2°119.3°
CAMCALH15H16127.4°121.5°
CALCAMH17H18120.1°122.6°
CALCAMCAOH19142.1°156.2°
CALCAMCAOH2091.5°80.3°
CALCANCAZH1232.2°95.2°
CALCANH13H14126.6°121.4°
CANCALH15H16127.4°121.3°
CANCALCAMH17132.6°142.3°
CANCALCAMH18107.4°95.2°
H1CAFCADH21.1°0.0°
H2CADCAEH31.5°0.1°
H3CAECAGH41.3°0.1°
H7CAICAHH84.6°0.0°
H12CAZCANH13149.8°145.5°
H12CAZCANH1485.4°24.1°
H12CAZCAOH1971.1°37.5°
H12CAZCAOH20162.5°160.9°
H13CANCALH15166.7°0.1°
H13CANCALH1641.3°121.4°
H14CANCALH1541.9°121.4°
H14CANCALH1683.5°0.0°
H15CALCAMH1715.2°23.0°
H15CALCAMH18135.3°145.5°
H16CALCAMH17110.1°98.5°
H16CALCAMH189.9°24.1°
H17CAMCAOH1922.1°85.1°
H17CAMCAOH20148.5°38.3°
H18CAMCAOH1997.9°37.5°
H18CAMCAOH2028.4°160.9°

249697

PDB entries from 2026-02-25

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