English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

XPO

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O	C	doub	1.21Å	1.24Å
C	O2	sing	1.34Å	1.42Å
O3	P	doub	1.48Å	1.47Å
O2	P	sing	1.61Å	1.51Å
P	O1	sing	1.61Å	1.47Å
P	O4	sing	1.61Å	1.47Å
C	H1	sing	1.08Å	1.08Å
O1	H2	sing	0.97Å	0.95Å
O4	H3	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O	C	O2	123.7°	120.1°
O	C	H1	118.2°	120.0°
C	O2	P	118.2°	117.1°
O2	C	H1	118.2°	119.9°
O3	P	O2	105.7°	109.4°
O3	P	O1	110.5°	109.5°
O3	P	O4	108.2°	109.5°
O2	P	O1	116.9°	109.5°
O2	P	O4	106.7°	109.4°
O1	P	O4	108.5°	109.5°
P	O1	H2	109.5°	114.0°
P	O4	H3	109.5°	114.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O	C	O2	H1	180.0°	179.7°
O	C	O2	P	133.1°	179.7°
C	O2	P	O3	65.1°	55.0°
C	O2	P	O1	58.2°	175.0°
C	O2	P	O4	179.8°	65.0°
O3	P	O2	O1	123.3°	120.0°
O3	P	O2	O4	115.1°	120.0°
O3	P	O1	O4	118.5°	120.0°
O3	P	O1	H2	0.0°	60.0°
O3	P	O4	H3	0.0°	180.0°
O2	P	O1	O4	120.6°	120.0°
P	O2	C	H1	46.9°	0.0°
O2	P	O1	H2	120.8°	180.0°
O2	P	O4	H3	113.4°	60.1°
O1	P	O4	H3	119.9°	59.9°
O4	P	O1	H2	118.5°	60.0°

218853

PDB entries from 2024-04-24

PDB statistics

PDBj update info

Contact PDBj

numon