Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

XOY

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C39C40doub1.38Å1.39ÅAromatic
C39C38sing1.38Å1.39ÅAromatic
C40C41sing1.38Å1.39ÅAromatic
C38C37doub1.38Å1.39ÅAromatic
C41C42doub1.38Å1.39ÅAromatic
C37C42sing1.38Å1.39ÅAromatic
C37C36sing1.51Å1.52Å
C36S1sing1.81Å1.77Å
S1C35sing1.81Å1.77Å
C35C33sing1.53Å1.53Å
C29C28sing1.51Å1.51Å
C33C34sing1.51Å1.50Å
C33N3sing1.47Å1.45Å
O4C34doub1.21Å1.25Å
C27C28doub1.38Å1.39ÅAromatic
C27C26sing1.38Å1.40ÅAromatic
C28C30sing1.38Å1.39ÅAromatic
C34O3sing1.34Å1.25Å
N3C32sing1.35Å1.33Å
C26C25doub1.38Å1.40ÅAromatic
C30C31doub1.38Å1.39ÅAromatic
C32O2doub1.22Å1.22Å
C32N2sing1.35Å1.33Å
O1C23doub1.22Å1.23Å
C25C31sing1.38Å1.39ÅAromatic
C25C24sing1.51Å1.53Å
N2C23sing1.35Å1.34Å
N2C24sing1.46Å1.45Å
C23C21sing1.48Å1.51Å
C20C21doub1.40Å1.38ÅAromatic
C20C19sing1.38Å1.39ÅAromatic
C21C22sing1.39Å1.40ÅAromatic
C19C17doub1.39Å1.39ÅAromatic
C22C16doub1.38Å1.40ÅAromatic
C17C16sing1.38Å1.38ÅAromatic
C17C18sing1.51Å1.52Å
C16C15sing1.51Å1.52Å
C4C5doub1.38Å1.39ÅAromatic
C4C3sing1.38Å1.39ÅAromatic
C5C6sing1.39Å1.40ÅAromatic
C18N1sing1.47Å1.48Å
CL3C3sing1.74Å1.79Å
C3C2doub1.38Å1.39ÅAromatic
C15C14sing1.53Å1.53Å
C8C9doub1.38Å1.39ÅAromatic
C8C7sing1.39Å1.39ÅAromatic
C9C10sing1.38Å1.39ÅAromatic
C6C7sing1.48Å1.49Å
C6C1doub1.39Å1.39ÅAromatic
C7C12doub1.39Å1.39ÅAromatic
N1C14sing1.47Å1.48Å
N1C13sing1.47Å1.48Å
C10C11doub1.38Å1.39ÅAromatic
C12C11sing1.38Å1.39ÅAromatic
C12C13sing1.51Å1.52Å
C2C1sing1.38Å1.38ÅAromatic
C1H1sing1.08Å1.08Å
C10H2sing1.08Å1.08Å
C11H3sing1.08Å1.08Å
C13H4sing1.09Å1.10Å
C13H5sing1.09Å1.10Å
C14H6sing1.09Å1.10Å
C14H7sing1.09Å1.10Å
C15H8sing1.09Å1.10Å
C15H9sing1.09Å1.10Å
C18H10sing1.09Å1.10Å
C18H11sing1.09Å1.10Å
C19H12sing1.08Å1.08Å
C2H13sing1.08Å1.08Å
C20H14sing1.08Å1.08Å
C22H15sing1.08Å1.08Å
C24H16sing1.09Å1.10Å
C24H17sing1.09Å1.10Å
C26H18sing1.08Å1.08Å
C27H19sing1.08Å1.08Å
C29H20sing1.09Å1.10Å
C29H21sing1.09Å1.10Å
C29H22sing1.09Å1.10Å
C30H23sing1.08Å1.08Å
C31H24sing1.08Å1.08Å
C33H25sing1.09Å1.10Å
C35H26sing1.09Å1.10Å
C35H27sing1.09Å1.10Å
C36H28sing1.09Å1.10Å
C36H29sing1.09Å1.10Å
C38H30sing1.08Å1.08Å
C39H31sing1.08Å1.08Å
C4H32sing1.08Å1.08Å
C40H33sing1.08Å1.08Å
C41H34sing1.08Å1.08Å
C42H35sing1.08Å1.08Å
C5H36sing1.08Å1.08Å
C8H37sing1.08Å1.08Å
C9H38sing1.08Å1.08Å
N3H40sing0.97Å1.00Å
O3H41sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C40C39C38119.8°120.0°
C39C40C41119.6°120.0°
C40C39H31120.1°120.0°
C39C40H33120.2°120.1°
C39C38C37120.9°120.0°
C39C38H30119.6°120.0°
C38C39H31120.1°120.0°
C40C41C42120.4°120.0°
C41C40H33120.2°119.9°
C40C41H34119.8°120.0°
C38C37C42119.2°119.9°
C38C37C36120.2°120.0°
C37C38H30119.6°119.9°
C41C42C37120.1°120.1°
C42C41H34119.8°120.0°
C41C42H35119.9°120.0°
C42C37C36120.6°120.0°
C37C42H35119.9°120.0°
C37C36S1113.7°109.5°
C37C36H28108.4°109.5°
C37C36H29108.4°109.5°
C36S1C35101.3°103.0°
S1C36H28108.4°109.5°
S1C36H29108.4°109.5°
S1C35C33110.3°109.5°
S1C35H26109.3°109.5°
S1C35H27109.3°109.5°
C35C33C34108.4°109.5°
C35C33N3110.5°109.4°
C35C33H25108.7°109.5°
C33C35H26109.3°109.5°
C33C35H27109.2°109.4°
C29C28C27120.6°120.0°
C29C28C30119.6°120.0°
C28C29H20109.5°109.5°
C28C29H21109.5°109.5°
C28C29H22109.5°109.5°
C34C33N3110.6°109.5°
C33C34O4118.8°120.0°
C33C34O3118.7°120.0°
C34C33H25109.0°109.5°
C33N3C32121.5°119.9°
N3C33H25109.7°109.5°
C33N3H40119.2°120.0°
O4C34O3122.6°120.0°
C28C27C26119.7°120.0°
C27C28C30119.7°120.1°
C28C27H19120.1°120.1°
C27C26C25120.9°120.0°
C27C26H18119.5°120.0°
C26C27H19120.2°120.0°
C28C30C31120.2°120.0°
C28C30H23119.9°120.0°
C34O3H41109.5°117.0°
N3C32O2120.2°120.0°
N3C32N2122.1°119.9°
C32N3H40119.3°120.0°
C26C25C31118.6°120.0°
C26C25C24121.7°120.0°
C25C26H18119.6°120.0°
C30C31C25120.9°120.0°
C31C30H23119.9°120.0°
C30C31H24119.5°120.0°
O2C32N2117.3°120.0°
C32N2C23116.3°120.0°
C32N2C24117.5°120.0°
O1C23N2119.5°120.0°
O1C23C21116.3°120.0°
C31C25C24119.7°120.0°
C25C31H24119.6°119.9°
C25C24N2107.0°109.4°
C25C24H16110.1°109.4°
C25C24H17110.1°109.5°
C23N2C24126.2°120.0°
N2C23C21124.2°120.0°
N2C24H16110.1°109.5°
N2C24H17110.1°109.5°
C23C21C20122.9°120.2°
C23C21C22118.5°120.2°
C21C20C19119.9°119.7°
C20C21C22118.2°119.5°
C21C20H14120.0°120.2°
C20C19C17121.6°120.6°
C20C19H12119.2°119.7°
C19C20H14120.1°120.1°
C21C22C16121.7°120.2°
C21C22H15119.2°119.9°
C19C17C16119.1°119.9°
C19C17C18118.6°118.3°
C17C19H12119.2°119.7°
C22C16C17119.3°120.0°
C22C16C15120.6°118.4°
C16C22H15119.1°119.8°
C16C17C18122.3°121.8°
C17C16C15120.0°121.6°
C17C18N1113.7°110.6°
C17C18H10108.4°109.3°
C17C18H11108.4°109.2°
C16C15C14110.9°110.0°
C16C15H8109.1°109.4°
C16C15H9109.1°109.3°
C5C4C3119.8°120.1°
C4C5C6119.2°119.9°
C5C4H32120.1°119.9°
C4C5H36120.4°120.0°
C4C3CL3119.9°119.9°
C4C3C2121.0°120.2°
C3C4H32120.1°120.0°
C5C6C7120.2°120.1°
C5C6C1120.4°119.8°
C6C5H36120.4°120.1°
C18N1C14109.8°110.1°
C18N1C13109.6°111.0°
N1C18H10108.4°109.3°
N1C18H11108.4°109.2°
CL3C3C2119.1°119.9°
C3C2C1118.9°120.1°
C3C2H13120.5°120.0°
C15C14N1110.5°108.6°
C15C14H6109.2°109.7°
C15C14H7109.2°109.7°
C14C15H8109.1°109.4°
C14C15H9109.1°109.3°
C9C8C7120.6°119.8°
C8C9C10119.5°120.1°
C9C8H37119.7°120.1°
C8C9H38120.3°120.0°
C8C7C6116.3°120.1°
C8C7C12120.1°119.8°
C7C8H37119.7°120.1°
C9C10C11119.7°120.2°
C9C10H2120.1°119.9°
C10C9H38120.3°119.9°
C7C6C1119.4°120.1°
C6C7C12123.6°120.1°
C6C1C2120.6°119.9°
C6C1H1119.7°120.1°
C7C12C11118.9°119.9°
C7C12C13122.5°120.1°
C14N1C13110.8°111.3°
N1C14H6109.2°109.6°
N1C14H7109.2°109.6°
N1C13C12108.7°109.5°
N1C13H4109.7°109.5°
N1C13H5109.6°109.5°
C10C11C12121.2°120.1°
C11C10H2120.1°119.9°
C10C11H3119.4°119.9°
C11C12C13118.6°120.1°
C12C11H3119.4°120.0°
C12C13H4109.6°109.5°
C12C13H5109.7°109.4°
C2C1H1119.7°120.0°
C1C2H13120.5°119.9°
H4C13H5109.5°109.4°
H6C14H7109.4°109.6°
H8C15H9109.5°109.4°
H10C18H11109.5°109.2°
H16C24H17109.5°109.5°
H20C29H21109.5°109.5°
H20C29H22109.5°109.5°
H21C29H22109.5°109.4°
H26C35H27109.5°109.4°
H28C36H29109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C40C39C38H31180.0°180.0°
C39C40C41H33180.0°180.0°
C40C39C38C370.2°0.0°
C39C40C41C420.4°0.0°
C40C39C38H30179.8°180.0°
C39C40C41H34179.6°180.0°
C38C39C40C410.3°0.0°
C39C38C37H30180.0°180.0°
C39C38C37C420.6°0.0°
C39C38C37C36179.7°179.8°
C38C39C40H33179.7°180.0°
C40C41C42H34180.0°180.0°
C40C41C42C370.0°0.0°
C41C40C39H31179.7°180.0°
C40C41C42H35180.0°179.8°
C38C37C42C410.5°0.0°
C38C37C42C36179.0°179.7°
C38C37C36S194.1°89.7°
C38C37C36H28145.2°30.3°
C38C37C36H2926.5°150.3°
C37C38C39H31179.8°180.0°
C38C37C42H35179.5°179.7°
C41C42C37H35180.0°179.7°
C41C42C37C36179.6°179.7°
C42C41C40H33179.6°179.9°
C42C37C36S186.8°90.0°
C42C37C36H2833.8°150.0°
C42C37C36H29152.5°30.0°
C42C37C38H30179.4°180.0°
C37C42C41H34180.0°180.0°
C37C36S1H28120.6°120.0°
C37C36S1H29120.6°120.0°
C37C36S1C35172.0°180.0°
C37C36H28H29118.1°120.0°
C36C37C38H300.3°0.3°
C36C37C42H350.4°0.0°
C36S1C35C3351.0°180.0°
C36S1C35H2669.1°60.0°
C36S1C35H27171.1°60.0°
S1C36H28H29118.1°120.0°
S1C35C33H26120.1°120.0°
S1C35C33H27120.1°120.0°
S1C35C33C34167.6°180.0°
S1C35C33N371.1°60.0°
S1C35C33H2549.3°60.0°
S1C35H26H27119.7°120.0°
C35S1C36H2851.4°60.0°
C35S1C36H2967.3°60.0°
C35C33C34N3121.3°119.9°
C35C33C34H25118.1°120.0°
C35C33N3H25119.8°120.0°
C35C33C34O495.8°120.0°
C35C33C34O384.3°60.0°
C35C33N3C32166.5°155.0°
C33C35H26H27119.6°119.9°
C35C33N3H4013.6°25.1°
C29C28C27C30179.7°179.9°
C29C28C27C26179.5°180.0°
C29C28C30C31179.5°180.0°
C29C28C27H190.5°0.0°
C28C29H20H21120.0°120.0°
C28C29H20H22120.0°120.0°
C28C29H21H22120.0°120.0°
C29C28C30H230.4°0.0°
C34C33N3H25120.2°120.0°
C33C34O4O3179.9°180.0°
C34C33N3C3273.5°85.0°
C34C33C35H2647.5°59.9°
C34C33C35H2772.3°60.0°
C34C33N3H40106.4°94.9°
C33C34O3H41179.9°179.9°
N3C33C34O4142.9°0.1°
N3C33C34O337.0°180.0°
C33N3C32H40180.0°179.9°
C33N3C32O24.0°0.1°
C33N3C32N2176.9°180.0°
N3C33C35H26168.8°60.0°
N3C33C35H2749.0°180.0°
O4C34C33H2522.3°120.0°
O4C34O3H410.0°0.0°
C28C27C26H19180.0°180.0°
C28C27C26C250.3°0.0°
C27C28C30C310.2°0.1°
C28C27C26H18179.7°180.0°
C27C28C29H2090.1°90.0°
C27C28C29H21149.9°150.0°
C27C28C29H2229.9°30.0°
C27C28C30H23179.9°180.0°
C26C27C28C300.2°0.1°
C27C26C25H18180.0°180.0°
C27C26C25C310.4°0.0°
C27C26C25C24179.8°179.8°
C28C30C31H23180.0°179.9°
C28C30C31C250.2°0.1°
C30C28C27H19179.8°180.0°
C30C28C29H2090.2°90.0°
C30C28C29H2129.9°30.1°
C30C28C29H22149.8°150.0°
C28C30C31H24179.8°179.8°
O3C34C33H25157.6°60.0°
N3C32O2N2173.2°179.9°
N3C32N2C2312.6°180.0°
N3C32N2C24168.1°0.0°
C32N3C33H2546.6°35.1°
C26C25C31C300.3°0.1°
C26C25C31C24179.4°179.8°
C26C25C24N249.6°83.1°
C26C25C24H1670.0°36.9°
C26C25C24H17169.2°156.9°
C25C26C27H19179.7°180.0°
C26C25C31H24179.7°179.7°
C30C31C25H24180.0°179.7°
C30C31C25C24179.8°179.7°
O2C32N2C23160.5°0.0°
O2C32N2C2418.8°179.9°
O2C32N3H40176.0°180.0°
C32N2C23O12.7°6.6°
C32N2C24C2568.6°86.1°
C32N2C23C24179.2°180.0°
C32N2C23C21173.9°173.4°
C32N2C24H16171.7°154.0°
C32N2C24H1751.0°33.9°
N2C32N3H403.1°0.1°
O1C23N2C21176.7°179.9°
O1C23N2C24178.0°173.4°
O1C23C21C2054.2°114.4°
O1C23C21C22119.1°65.6°
C31C25C24N2131.0°96.7°
C31C25C24H16109.4°143.3°
C31C25C24H1711.4°23.3°
C31C25C26H18179.6°180.0°
C25C31C30H23179.8°180.0°
C25C24N2C23112.1°93.9°
C25C24N2H16119.6°119.9°
C25C24N2H17119.6°120.0°
C25C24H16H17121.1°120.0°
C24C25C26H180.2°0.3°
C24C25C31H240.2°0.0°
N2C23C21C20129.1°65.6°
N2C23C21C2257.7°114.4°
C23N2C24H167.5°26.0°
C23N2C24H17128.3°146.1°
C24N2C23C215.3°6.7°
N2C24H16H17121.1°120.1°
C23C21C20C22173.3°180.0°
C23C21C20C19177.2°179.9°
C23C21C22C16178.2°179.9°
C23C21C20H142.8°0.1°
C23C21C22H151.9°0.0°
C21C20C19H14180.0°180.0°
C21C20C19C171.8°0.0°
C20C21C22C164.6°0.1°
C21C20C19H12178.2°180.0°
C20C21C22H15175.4°180.0°
C19C20C21C223.9°0.1°
C20C19C17H12180.0°180.0°
C20C19C17C160.2°0.1°
C20C19C17C18179.8°179.8°
C21C22C16H15180.0°179.9°
C21C22C16C173.1°0.0°
C21C22C16C15178.0°179.9°
C22C21C20H14176.1°179.8°
C19C17C16C220.8°0.1°
C19C17C16C18179.5°179.8°
C19C17C16C15179.8°179.8°
C19C17C18N1166.9°162.6°
C19C17C18H1046.2°42.3°
C19C17C18H1172.5°77.1°
C17C19C20H14178.2°179.9°
C22C16C17C15178.9°179.9°
C22C16C17C18179.7°179.7°
C22C16C15C14161.5°163.3°
C22C16C15H841.3°76.5°
C22C16C15H978.3°43.2°
C16C17C18N113.6°17.5°
C17C16C15C1419.6°16.8°
C17C16C15H8139.8°103.4°
C17C16C15H9100.6°136.9°
C16C17C18H10134.3°137.9°
C16C17C18H11107.0°102.7°
C16C17C19H12179.8°179.9°
C17C16C22H15177.0°179.9°
C18C17C16C150.7°0.4°
C17C18N1H10120.7°120.3°
C17C18N1H11120.6°120.3°
C17C18N1C1445.6°52.5°
C17C18N1C13167.5°176.1°
C17C18H10H11118.1°119.4°
C18C17C19H120.2°0.3°
C16C15C14H8120.2°120.2°
C16C15C14H9120.2°120.0°
C16C15C14N152.1°50.5°
C16C15C14H668.1°69.3°
C16C15C14H7172.3°170.3°
C16C15H8H9119.3°119.7°
C15C16C22H152.0°0.2°
C5C4C3H32180.0°179.7°
C4C5C6H36180.0°179.7°
C5C4C3CL3180.0°179.9°
C5C4C3C20.2°0.1°
C4C5C6C7178.9°180.0°
C4C5C6C10.9°0.6°
C3C4C5C60.4°0.3°
C4C3CL3C2179.8°180.0°
C4C3C2C10.5°0.1°
C4C3C2H13179.5°180.0°
C3C4C5H36179.6°180.0°
C5C6C7C864.8°58.0°
C5C6C7C1178.0°179.5°
C5C6C7C12115.9°121.9°
C5C6C1C21.2°0.6°
C5C6C1H1178.8°179.7°
C6C5C4H32179.6°180.0°
C18N1C14C1566.3°71.2°
C18N1C14C13121.2°123.5°
C18N1C13C1256.3°74.3°
C18N1C13H463.6°165.7°
C18N1C13H5176.2°45.7°
C18N1C14H653.9°48.6°
C18N1C14H7173.5°169.0°
N1C18H10H11118.1°119.4°
CL3C3C2C1179.7°179.9°
CL3C3C2H130.3°0.0°
CL3C3C4H320.0°0.2°
C3C2C1C61.0°0.3°
C3C2C1H13180.0°179.9°
C3C2C1H1179.0°180.0°
C2C3C4H32179.8°179.8°
C15C14N1H6120.2°119.8°
C15C14N1H7120.2°119.8°
C15C14N1C13172.4°165.3°
C15C14H6H7119.5°120.4°
C14C15H8H9119.3°119.7°
C9C8C7H37180.0°179.5°
C8C9C10H38180.0°179.4°
C9C8C7C6179.7°179.7°
C9C8C7C120.3°0.3°
C8C9C10C110.3°0.6°
C8C9C10H2179.7°179.7°
C7C8C9C100.4°0.6°
C8C7C6C12179.3°180.0°
C8C7C6C1113.1°121.4°
C8C7C12C110.2°0.0°
C8C7C12C13178.8°180.0°
C7C8C9H38179.6°180.0°
C9C10C11H2180.0°179.7°
C9C10C11C120.1°0.3°
C9C10C11H3179.9°179.7°
C10C9C8H37179.6°179.9°
C6C7C12C11179.5°180.0°
C6C7C12C131.9°0.0°
C7C6C1C2179.2°180.0°
C7C6C1H10.8°0.3°
C7C6C5H361.1°0.3°
C6C7C8H370.3°0.2°
C1C6C7C1266.2°58.6°
C6C1C2H1180.0°179.7°
C6C1C2H13179.0°179.8°
C1C6C5H36179.1°179.7°
C7C12C13N1111.7°74.1°
C7C12C11C100.1°0.0°
C7C12C11C13178.7°180.0°
C7C12C11H3179.9°180.0°
C7C12C13H48.2°46.0°
C7C12C13H5128.4°165.9°
C12C7C8H37179.6°179.7°
C14N1C13C12177.6°162.8°
C14N1C13H457.7°42.7°
C14N1C13H562.5°77.3°
N1C14H6H7119.5°120.4°
N1C14C15H8172.3°69.7°
N1C14C15H968.1°170.5°
C14N1C18H10166.2°172.8°
C14N1C18H1175.0°67.8°
N1C13C12C1166.9°105.9°
N1C13C12H4119.9°120.1°
N1C13C12H5119.9°120.0°
N1C13H4H5120.3°120.0°
C13N1C14H667.4°74.9°
C13N1C14H752.3°45.5°
C13N1C18H1071.8°63.6°
C13N1C18H1146.9°55.8°
C10C11C12H3180.0°180.0°
C10C11C12C13178.7°180.0°
C11C10C9H38179.7°180.0°
C12C11C10H2179.8°180.0°
C11C12C13H4173.2°134.0°
C11C12C13H552.9°14.1°
C13C12C11H31.3°0.0°
C12C13H4H5120.4°119.9°
H1C1C2H131.0°0.1°
H2C10C11H30.1°0.0°
H2C10C9H380.3°0.3°
H6C14C15H852.1°170.4°
H6C14C15H9171.7°50.7°
H7C14C15H867.5°50.1°
H7C14C15H952.1°69.7°
H12C19C20H141.8°0.0°
H18C26C27H190.3°0.0°
H20C29H21H22120.0°120.0°
H23C30C31H240.2°0.3°
H25C33C35H2670.8°180.0°
H25C33C35H27169.5°60.0°
H25C33N3H40133.4°145.0°
H30C38C39H310.2°0.0°
H31C39C40H330.3°0.0°
H32C4C5H360.4°0.3°
H33C40C41H340.4°0.1°
H34C41C42H350.0°0.2°
H37C8C9H380.4°0.6°

225946

PDB entries from 2024-10-09

PDB statisticsPDBj update infoContact PDBjnumon