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XNP

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O3'C3'sing1.43Å1.45Å
C3'C2'sing1.52Å1.52Å
C3'C4'sing1.56Å1.55Å
C2'O2'sing1.41Å1.45Å
C2'C1'sing1.58Å1.55Å
O2'CAAsing1.45Å1.50Å
CAACABsing1.53Å1.50Å
CAANAFsing1.50Å1.47Å
CABCACsing1.53Å1.54Å
CACCADsing1.50Å1.42Å
CADCBTsing1.41Å1.40Å
CADCAEdoub1.35Å1.39Å
CBTOBVdoub1.22Å1.24Å
CBTNBUsing1.35Å1.33Å
CAENAFsing1.36Å1.33Å
NAFC1'sing1.42Å1.43Å
C1'O4'sing1.40Å1.38Å
O4'C4'sing1.46Å1.45Å
C4'C5'sing1.53Å1.51Å
C5'O5'sing1.43Å1.41Å
O5'PANsing1.61Å1.61Å
PANOBPdoub1.48Å1.63Å
PANOBOsing1.61Å1.48Å
PANOAOsing1.61Å1.59Å
OAOPAPsing1.61Å1.59Å
PAPOBQdoub1.48Å1.57Å
PAPOBRsing1.61Å1.48Å
PAPOAQsing1.61Å1.66Å
OAQCARsing1.43Å1.47Å
CARCASsing1.53Å1.56Å
CASOAWsing1.44Å1.46Å
CASCATsing1.54Å1.52Å
OAWCAVsing1.44Å1.47Å
CATOAZsing1.43Å1.44Å
CATCAUsing1.55Å1.52Å
CAUOAYsing1.43Å1.40Å
CAUCAVsing1.55Å1.49Å
OAYPBAsing1.61Å1.65Å
PBAOBBdoub1.48Å1.59Å
PBAOBCsing1.61Å1.59Å
PBAOBDsing1.61Å1.48Å
CAVNAXsing1.47Å1.47Å
NAXCBEsing1.36Å1.46ÅAromatic
NAXCBHsing1.37Å1.45ÅAromatic
CBENBFdoub1.30Å1.50ÅAromatic
NBFCBGsing1.36Å1.34ÅAromatic
CBGCBHdoub1.40Å1.39ÅAromatic
CBGCBIsing1.41Å1.33ÅAromatic
CBHNBLsing1.33Å1.48ÅAromatic
NBLCBKdoub1.32Å1.39ÅAromatic
CBKNBJsing1.32Å1.41ÅAromatic
NBJCBIdoub1.33Å1.35ÅAromatic
CBINBMsing1.38Å1.32Å
O3'H1sing0.97Å0.95Å
C3'H2sing1.09Å1.10Å
C2'H3sing1.09Å1.10Å
CAAH4sing1.09Å1.10Å
CABH5sing1.09Å1.10Å
CABH6sing1.09Å1.10Å
CACH7sing1.09Å1.10Å
CACH8sing1.09Å1.10Å
NBUH9sing0.97Å1.00Å
NBUH10sing0.97Å1.00Å
CAEH11sing1.08Å1.08Å
C1'H12sing1.09Å1.10Å
C4'H13sing1.09Å1.10Å
C5'H14sing1.09Å1.10Å
C5'H15sing1.09Å1.10Å
OBOH16sing0.97Å0.95Å
OBRH17sing0.97Å0.95Å
CARH18sing1.09Å1.10Å
CARH19sing1.09Å1.10Å
CASH20sing1.09Å1.10Å
CATH21sing1.09Å1.10Å
OAZH22sing0.97Å0.95Å
CAUH23sing1.09Å1.10Å
OBCH24sing0.97Å0.95Å
OBDH25sing0.97Å0.95Å
CAVH26sing1.09Å1.10Å
CBEH27sing1.08Å1.08Å
CBKH30sing1.08Å1.08Å
NBMH31sing0.97Å1.00Å
NBMH32sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O3'C3'C2'114.4°110.8°
O3'C3'C4'113.0°110.8°
C3'O3'H1109.5°114.0°
O3'C3'H2110.6°110.7°
C2'C3'C4'99.4°102.5°
C3'C2'O2'119.4°122.4°
C3'C2'C1'96.1°98.8°
C2'C3'H2109.6°110.8°
C3'C2'H3113.9°111.1°
C3'C4'O4'101.3°106.6°
C3'C4'C5'111.9°110.1°
C4'C3'H2109.3°111.0°
C3'C4'H13108.7°110.0°
O2'C2'C1'95.3°99.5°
C2'O2'CAA101.5°104.2°
O2'C2'H3115.1°111.2°
C2'C1'NAF95.6°99.4°
C2'C1'O4'104.6°101.4°
C1'C2'H3113.4°112.2°
C2'C1'H12106.1°107.5°
O2'CAACAB118.3°110.1°
O2'CAANAF102.8°107.1°
O2'CAAH4108.4°111.0°
CABCAANAF109.7°105.8°
CAACABCAC104.0°108.7°
CABCAAH4108.4°111.0°
CAACABH5110.8°109.6°
CAACABH6110.8°109.6°
CAANAFCAE113.6°122.4°
CAANAFC1'84.7°103.6°
NAFCAAH4108.9°111.6°
CABCACCAD113.0°111.8°
CACCABH5110.8°109.6°
CACCABH6110.8°109.6°
CABCACH7108.6°109.1°
CABCACH8108.5°109.0°
CACCADCBT122.2°118.6°
CACCADCAE121.6°122.9°
CADCACH7108.6°109.0°
CADCACH8108.6°109.0°
CBTCADCAE116.1°118.6°
CADCBTOBV120.8°120.0°
CADCBTNBU115.8°120.0°
CADCAENAF121.9°118.9°
CADCAEH11119.1°120.6°
OBVCBTNBU123.4°120.0°
CBTNBUH9120.0°120.1°
CBTNBUH10120.0°120.0°
CAENAFC1'116.8°133.9°
NAFCAEH11119.0°120.5°
NAFC1'O4'131.5°129.6°
NAFC1'H12107.5°108.6°
C1'O4'C4'86.5°104.2°
O4'C1'H12108.3°107.9°
O4'C4'C5'115.5°110.1°
O4'C4'H13110.0°110.0°
C4'C5'O5'107.8°109.5°
C5'C4'H13109.2°110.0°
C4'C5'H14109.9°109.4°
C4'C5'H15109.9°109.4°
C5'O5'PAN122.3°123.0°
O5'C5'H14109.9°109.5°
O5'C5'H15109.9°109.5°
O5'PANOBP103.6°109.4°
O5'PANOBO114.0°109.5°
O5'PANOAO101.7°109.5°
OBPPANOBO111.9°109.5°
OBPPANOAO105.6°109.5°
OBOPANOAO118.5°109.4°
PANOBOH16109.5°114.0°
PANOAOPAP123.1°134.0°
OAOPAPOBQ113.5°109.5°
OAOPAPOBR120.8°109.5°
OAOPAPOAQ87.1°109.5°
OBQPAPOBR125.3°109.5°
OBQPAPOAQ84.6°109.4°
OBRPAPOAQ91.6°109.4°
PAPOBRH17109.5°114.0°
PAPOAQCAR123.4°123.0°
OAQCARCAS111.4°109.4°
OAQCARH18109.0°109.4°
OAQCARH19109.0°109.4°
CARCASOAW112.0°109.9°
CARCASCAT112.6°109.8°
CASCARH18109.0°109.5°
CASCARH19108.9°109.5°
CARCASH20109.7°109.9°
OAWCASCAT100.8°107.3°
CASOAWCAV108.7°107.0°
OAWCASH20111.2°109.9°
CASCATOAZ111.7°110.4°
CASCATCAU99.5°104.2°
CATCASH20110.2°110.0°
CASCATH21110.8°110.5°
OAWCAVCAU104.4°103.5°
OAWCAVNAX115.5°110.7°
OAWCAVH26110.7°110.6°
OAZCATCAU111.1°110.5°
OAZCATH21112.2°110.5°
CATOAZH22109.5°114.0°
CATCAUOAY112.5°110.9°
CATCAUCAV98.0°102.1°
CAUCATH21110.9°110.6°
CATCAUH23111.2°110.8°
OAYCAUCAV109.5°110.9°
CAUOAYPBA114.7°123.0°
OAYCAUH23113.1°110.8°
CAUCAVNAX105.0°110.6°
CAVCAUH23111.7°110.9°
CAUCAVH26110.3°110.6°
OAYPBAOBB103.4°109.4°
OAYPBAOBC105.3°109.5°
OAYPBAOBD110.8°109.5°
OBBPBAOBC108.0°109.4°
OBBPBAOBD114.5°109.5°
OBCPBAOBD113.9°109.5°
PBAOBCH24109.5°114.0°
PBAOBDH25109.5°114.0°
CAVNAXCBE114.5°126.2°
CAVNAXCBH108.8°126.3°
NAXCAVH26110.6°110.6°
CBENAXCBH96.9°107.4°
NAXCBENBF99.5°110.0°
NAXCBEH27130.3°125.1°
NAXCBHCBG105.4°106.0°
NAXCBHNBL121.6°134.9°
CBENBFCBG108.5°109.4°
NBFCBEH27130.3°125.0°
NBFCBGCBH104.9°107.2°
NBFCBGCBI133.3°134.7°
CBHCBGCBI121.4°118.2°
CBGCBHNBL115.0°119.1°
CBGCBINBJ123.7°118.4°
CBGCBINBM115.7°120.8°
CBHNBLCBK119.4°120.6°
NBLCBKNBJ118.7°122.5°
NBLCBKH30120.6°118.7°
CBKNBJCBI119.4°121.1°
NBJCBKH30120.6°118.7°
NBJCBINBM120.6°120.8°
CBINBMH31109.5°120.0°
CBINBMH32109.4°120.0°
H5CABH6109.5°109.7°
H7CACH8109.5°109.0°
H9NBUH10120.0°120.0°
H14C5'H15109.5°109.5°
H18CARH19109.5°109.5°
H31NBMH32109.5°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O3'C3'C2'C4'120.6°118.3°
O3'C3'C2'H2124.9°123.3°
O3'C3'C4'H2123.6°123.5°
O3'C3'C2'O2'21.2°19.9°
O3'C3'C2'C1'120.8°87.3°
O3'C3'C4'O4'162.3°113.5°
O3'C3'C4'C5'74.1°127.1°
O3'C3'C2'H3120.2°154.7°
O3'C3'C4'H1346.5°5.8°
C2'C3'C4'H2114.7°118.3°
C3'C2'O2'C1'100.1°106.8°
C3'C2'O2'H3141.0°134.7°
C3'C2'C1'H3119.4°117.2°
C3'C2'O2'CAA118.6°148.9°
C3'C2'C1'NAF179.3°176.2°
C3'C2'C1'O4'43.8°50.0°
C2'C3'C4'O4'40.6°4.7°
C2'C3'C4'C5'164.2°114.6°
C2'C3'O3'H1180.0°180.0°
C3'C2'C1'H1270.6°63.2°
C2'C3'C4'H1375.2°124.0°
C4'C3'C2'O2'99.4°138.2°
C4'C3'C2'C1'0.2°31.0°
C3'C4'O4'C1'64.8°28.0°
C3'C4'O4'C5'121.1°119.3°
C3'C4'O4'H13114.8°119.3°
C3'C4'C5'H13120.3°121.4°
C3'C4'C5'O5'67.8°175.0°
C4'C3'O3'H167.2°66.9°
C4'C3'C2'H3119.2°87.0°
C3'C4'C5'H14172.5°54.9°
C3'C4'C5'H1552.0°65.0°
O2'C2'C1'H3120.3°117.6°
C2'O2'CAACAB146.5°94.9°
C2'O2'CAANAF25.6°19.7°
O2'C2'C1'NAF60.3°51.1°
O2'C2'C1'O4'164.2°175.1°
O2'C2'C3'H2146.1°103.4°
C2'O2'CAAH489.6°141.7°
O2'C2'C1'H1249.8°61.9°
C1'C2'O2'CAA18.6°42.0°
C2'C1'NAFCAA72.2°38.2°
C2'C1'NAFCAE174.1°138.7°
C2'C1'NAFO4'115.2°113.3°
C2'C1'NAFH12108.9°112.2°
C2'C1'O4'H12112.9°112.9°
C2'C1'O4'C4'67.2°48.2°
C1'C2'C3'H2114.3°149.4°
O2'CAACABNAF117.4°115.5°
O2'CAACABH4123.8°123.3°
O2'CAANAFH4114.8°121.6°
O2'CAACABCAC176.8°175.0°
O2'CAANAFCAE177.5°163.1°
O2'CAANAFC1'60.6°14.2°
CAAO2'C2'H3100.4°76.4°
O2'CAACABH564.1°55.2°
O2'CAACABH657.6°65.3°
CABCAANAFH4118.5°120.9°
CAACABCACH5119.2°119.8°
CAACABCACH6119.1°119.8°
CAACABCACCAD48.3°49.1°
CABCAANAFCAE55.8°45.6°
CABCAANAFC1'172.7°131.7°
CAACABH5H6122.5°120.4°
CAACABCACH7168.8°169.7°
CAACABCACH872.3°71.4°
NAFCAACABCAC65.8°59.5°
CAANAFCAECAD24.2°16.0°
CAANAFCAEC1'96.2°176.4°
CAANAFC1'O4'172.7°151.5°
NAFCAACABH553.3°60.3°
NAFCAACABH6175.1°179.3°
CAANAFCAEH11155.8°164.1°
CAANAFC1'H1236.7°74.0°
CABCACCADH7120.5°120.6°
CABCACCADH8120.5°120.5°
CABCACCADCBT162.0°160.4°
CABCACCADCAE20.8°19.5°
CACCABCAAH452.9°61.7°
CACCABH5H6122.5°120.4°
CABCACH7H8118.4°118.9°
CACCADCBTCAE177.3°179.9°
CACCADCBTOBV177.1°180.0°
CACCADCBTNBU0.8°0.1°
CACCADCAENAF7.3°1.4°
CADCACCABH570.9°70.7°
CADCACCABH6167.4°168.8°
CADCACH7H8118.4°118.8°
CACCADCAEH11172.7°178.7°
CADCBTOBVNBU177.7°179.9°
CBTCADCAENAF175.4°178.6°
CBTCADCACH741.5°39.8°
CBTCADCACH877.5°79.0°
CADCBTNBUH9177.8°0.0°
CADCBTNBUH102.2°180.0°
CBTCADCAEH114.6°1.4°
CAECADCBTOBV5.6°0.1°
CAECADCBTNBU176.5°180.0°
CADCAENAFH11180.0°180.0°
CADCAENAFC1'120.4°160.4°
CAECADCACH7141.3°140.1°
CAECADCACH899.7°101.0°
OBVCBTNBUH90.0°180.0°
OBVCBTNBUH10180.0°0.1°
CBTNBUH9H10180.0°180.0°
CAENAFC1'O4'58.9°25.3°
CAENAFCAAH462.7°75.3°
CAENAFC1'H1277.0°109.1°
NAFC1'O4'H12135.7°134.7°
NAFC1'O4'C4'178.6°160.7°
NAFC1'C2'H360.0°66.6°
C1'NAFCAAH454.2°107.4°
C1'NAFCAEH1159.6°19.5°
C1'O4'C4'C5'174.1°147.3°
O4'C1'C2'H375.5°67.2°
C1'O4'C4'H1350.0°91.3°
O4'C4'C5'H13124.5°121.4°
O4'C4'C5'O5'47.4°67.8°
O4'C4'C3'H274.1°123.0°
C4'O4'C1'H1245.7°64.7°
O4'C4'C5'H1472.3°172.1°
O4'C4'C5'H15167.1°52.2°
C4'C5'O5'H14119.7°120.0°
C4'C5'O5'H15119.7°120.0°
C4'C5'O5'PAN93.8°180.0°
C5'C4'C3'H249.5°3.7°
C4'C5'H14H15120.8°119.9°
C5'O5'PANOBP130.7°55.0°
C5'O5'PANOBO8.9°65.0°
C5'O5'PANOAO119.9°175.0°
O5'C5'C4'H13171.9°53.6°
O5'C5'H14H15120.8°120.1°
O5'PANOBPOBO123.2°120.0°
O5'PANOBPOAO106.5°120.0°
O5'PANOBOOAO119.7°120.0°
O5'PANOAOPAP168.5°159.9°
PANO5'C5'H1425.9°60.0°
PANO5'C5'H15146.5°60.0°
O5'PANOBOH16117.1°60.0°
OBPPANOBOOAO123.2°120.0°
OBPPANOAOPAP83.7°39.9°
OBPPANOBOH160.0°180.0°
OBOPANOAOPAP42.6°80.0°
PANOAOPAPOBQ155.5°40.1°
PANOAOPAPOBR31.5°79.9°
PANOAOPAPOAQ121.7°160.0°
OAOPANOBOH16123.3°60.0°
OAOPAPOBQOBR172.6°120.1°
OAOPAPOBQOAQ84.5°120.0°
OAOPAPOBROAQ87.6°120.0°
OAOPAPOAQCAR73.2°175.0°
OAOPAPOBRH17172.1°60.0°
OBQPAPOBROAQ84.5°119.9°
OBQPAPOAQCAR172.8°55.0°
OBQPAPOBRH170.0°180.0°
OBRPAPOAQCAR47.5°64.9°
PAPOAQCARCAS155.4°180.0°
OAQPAPOBRH1784.5°60.1°
PAPOAQCARH1835.1°60.0°
PAPOAQCARH1984.4°60.0°
OAQCARCASH18120.3°120.0°
OAQCARCASH19120.3°120.0°
OAQCARCASOAW67.2°66.5°
OAQCARCASCAT180.0°175.7°
OAQCARH18H19119.1°120.0°
OAQCARCASH2056.8°54.6°
CARCASOAWCAT120.0°119.4°
CARCASOAWH20123.1°121.1°
CARCASCATH20122.9°121.1°
CARCASOAWCAV140.5°145.9°
CARCASCATOAZ78.2°119.9°
CARCASCATCAU164.5°121.5°
CASCARH18H19119.1°120.1°
CARCASCATH2147.6°2.6°
OAWCASCATH20117.6°119.5°
OAWCASCATOAZ162.2°120.7°
OAWCASCATCAU44.9°2.1°
CASOAWCAVCAU12.5°40.0°
CASOAWCAVNAX102.2°158.6°
OAWCASCARH1853.1°53.5°
OAWCASCARH19172.5°173.6°
OAWCASCATH2171.9°116.8°
CASOAWCAVH26131.2°78.4°
CATCASOAWCAV20.5°26.5°
CASCATOAZCAU110.1°114.7°
CASCATOAZH21125.1°122.6°
CASCATCAUH21116.8°118.7°
CASCATCAUOAY63.0°139.1°
CASCATCAUCAV52.1°20.8°
CATCASCARH1859.8°64.3°
CATCASCARH1959.7°55.8°
CASCATOAZH22180.0°61.6°
CASCATCAUH23169.1°97.4°
OAWCAVCAUCAT39.8°37.0°
OAWCAVCAUOAY77.6°155.2°
OAWCAVCAUNAX121.9°118.6°
OAWCAVCAUH26118.9°118.5°
OAWCAVNAXH26126.6°122.9°
OAWCAVNAXCBE22.5°23.6°
OAWCAVNAXCBH129.7°156.7°
CAVOAWCASH2096.4°93.1°
OAWCAVCAUH23156.4°81.2°
OAZCATCAUH21125.5°122.7°
OAZCATCAUOAY54.8°20.5°
OAZCATCAUCAV169.8°97.8°
OAZCATCASH2044.7°1.2°
OAZCATCAUH2373.2°144.0°
CATCAUOAYCAV107.9°112.7°
CATCAUOAYH23127.0°123.6°
CATCAUCAVH23116.6°118.1°
CATCAUOAYPBA105.3°121.5°
CATCAUCAVNAX82.1°155.6°
CAUCATCASH2072.7°117.4°
CAUCATOAZH2269.8°176.3°
CATCAUCAVH26158.7°81.5°
OAYCAUCAVH23126.0°123.7°
CAUOAYPBAOBB178.1°55.1°
CAUOAYPBAOBC68.7°175.0°
CAUOAYPBAOBD54.9°64.9°
OAYCAUCAVNAX160.5°86.2°
OAYCAUCATH21179.7°102.2°
OAYCAUCAVH2641.3°36.7°
CAVCAUOAYPBA146.9°125.8°
CAUCAVNAXH26119.0°122.9°
CAUCAVNAXCBE136.8°90.5°
CAUCAVNAXCBH115.9°89.1°
CAVCAUCATH2164.7°139.6°
OAYPBAOBBOBC111.2°120.0°
OAYPBAOBBOBD120.7°120.0°
OAYPBAOBCOBD121.6°120.0°
PBAOAYCAUH2321.7°2.1°
OAYPBAOBCH24110.0°180.0°
OAYPBAOBDH25116.5°60.0°
OBBPBAOBCOBD128.4°120.0°
OBBPBAOBCH240.0°60.1°
OBBPBAOBDH250.0°180.0°
OBCPBAOBDH25125.0°60.0°
OBDPBAOBCH24128.4°60.0°
CAVNAXCBECBH114.4°179.7°
CAVNAXCBENBF157.0°180.0°
CAVNAXCBHCBG168.1°179.9°
CAVNAXCBHNBL58.7°0.0°
NAXCAVCAUH2334.6°37.4°
CAVNAXCBEH2723.0°0.1°
NAXCBENBFH27180.0°179.9°
NAXCBENBFCBG25.5°0.0°
CBENAXCBHCBG49.2°0.4°
CBENAXCBHNBL177.6°179.7°
CBENAXCAVH26104.2°146.6°
CBHNAXCBENBF42.6°0.3°
NAXCBHCBGNBF34.3°0.4°
NAXCBHCBGNBL136.7°179.9°
NAXCBHCBGCBI152.7°179.8°
NAXCBHNBLCBK146.9°180.0°
CBHNAXCAVH263.1°33.8°
CBHNAXCBEH27137.4°179.8°
CBENBFCBGCBH4.6°0.3°
CBENBFCBGCBI176.4°179.9°
NBFCBGCBHCBI173.0°179.7°
NBFCBGCBHNBL171.0°179.7°
NBFCBGCBINBJ178.8°179.2°
NBFCBGCBINBM1.7°0.1°
CBGNBFCBEH27154.5°179.9°
CBGCBHNBLCBK17.8°0.1°
CBHCBGCBINBJ8.1°0.4°
CBHCBGCBINBM172.4°179.7°
CBICBGCBHNBL16.0°0.1°
CBGCBINBJCBK0.7°0.6°
CBGCBINBJNBM179.4°179.3°
CBGCBINBMH31179.4°0.0°
CBGCBINBMH3260.6°180.0°
CBHNBLCBKNBJ11.4°0.0°
CBHNBLCBKH30168.6°179.9°
NBLCBKNBJH30180.0°179.9°
NBLCBKNBJCBI2.7°0.5°
CBKNBJCBINBM179.9°179.9°
CBINBJCBKH30177.3°179.7°
NBJCBINBMH310.0°179.3°
NBJCBINBMH32120.0°0.7°
CBINBMH31H32120.0°180.0°
H1O3'C3'H255.6°56.7°
H2C3'C2'H34.7°31.4°
H2C3'C4'H13170.1°117.7°
H3C2'C1'H12170.1°179.6°
H4CAACABH5172.1°178.5°
H4CAACABH666.2°58.1°
H5CABCACH749.6°49.9°
H5CABCACH8168.6°168.8°
H6CABCACH772.1°70.6°
H6CABCACH846.9°48.3°
H13C4'C5'H1452.1°66.4°
H13C4'C5'H1568.4°173.6°
H18CARCASH20177.0°174.6°
H19CARCASH2063.5°65.4°
H20CASCATH21170.5°123.7°
H21CATOAZH2254.9°61.0°
H21CATCAUH2352.3°21.4°
H23CAUCAVH2684.7°160.4°

222624

PDB entries from 2024-07-17

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