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SummaryGeometryRelated PDB entries

XNE

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C31C32sing1.53Å1.51Å
C31O30sing1.43Å1.40Å
C32N27sing1.47Å1.42Å
O30C29sing1.43Å1.41Å
C29C28sing1.53Å1.51Å
N27C26sing1.47Å1.46Å
N27C28sing1.47Å1.42Å
C26C25sing1.51Å1.51Å
C25N33doub1.32Å1.36ÅAromatic
C25C24sing1.38Å1.39ÅAromatic
N33C34sing1.32Å1.35ÅAromatic
C24C23doub1.38Å1.38ÅAromatic
C34C22doub1.40Å1.36ÅAromatic
C23C22sing1.40Å1.42ÅAromatic
C22C21sing1.48Å1.47Å
O20C18doub1.22Å1.26Å
C18C17sing1.46Å1.46Å
C18O19sing1.35Å1.26Å
C21C17doub1.38Å1.42ÅAromatic
C21C35sing1.47Å1.40ÅAromatic
C17N16sing1.38Å1.36ÅAromatic
C35C36doub1.40Å1.41ÅAromatic
C35C15sing1.41Å1.42ÅAromatic
C36C37sing1.37Å1.40ÅAromatic
N16C15sing1.37Å1.38ÅAromatic
C15C14doub1.39Å1.42ÅAromatic
C37C38doub1.39Å1.40ÅAromatic
O05C04doub1.21Å1.20Å
C14C38sing1.38Å1.39ÅAromatic
C14C02sing1.51Å1.55Å
C04C06sing1.48Å1.54Å
C04O03sing1.35Å1.36Å
C07C06doub1.40Å1.38ÅAromatic
C07C08sing1.38Å1.41ÅAromatic
C02O03sing1.45Å1.41Å
C02C01sing1.53Å1.50Å
C06C13sing1.40Å1.41ÅAromatic
C08C09doub1.38Å1.40ÅAromatic
C09C12sing1.38Å1.38ÅAromatic
C09C10sing1.51Å1.54Å
C13C12doub1.38Å1.39ÅAromatic
C10N11sing1.47Å1.43Å
O19H1sing0.97Å0.95Å
C13H131sing1.08Å1.08Å
C12H121sing1.08Å1.08Å
C10H101sing1.09Å1.10Å
C10H102sing1.09Å1.10Å
C01H013sing1.09Å1.10Å
C01H012sing1.09Å1.10Å
C01H011sing1.09Å1.10Å
C02H021sing1.09Å1.10Å
C07H071sing1.08Å1.08Å
C08H081sing1.08Å1.08Å
C23H231sing1.08Å1.08Å
C24H241sing1.08Å1.08Å
C26H262sing1.09Å1.10Å
C26H261sing1.09Å1.10Å
C28H282sing1.09Å1.10Å
C28H281sing1.09Å1.10Å
C29H292sing1.09Å1.10Å
C29H291sing1.09Å1.10Å
C31H311sing1.09Å1.10Å
C31H312sing1.09Å1.10Å
C32H321sing1.09Å1.10Å
C32H322sing1.09Å1.10Å
C34H341sing1.08Å1.08Å
C36H361sing1.08Å1.08Å
C37H371sing1.08Å1.08Å
C38H381sing1.08Å1.08Å
N11H111sing1.01Å1.00Å
N11H112sing1.01Å1.00Å
N16H161sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C32C31O30118.2°109.2°
C31C32N27119.2°109.2°
C32C31H311107.2°109.5°
C32C31H312107.3°109.5°
C31C32H321107.0°109.5°
C31C32H322107.0°109.5°
C31O30C29117.9°113.7°
O30C31H311107.3°109.6°
O30C31H312107.3°109.5°
C32N27C26111.6°111.0°
C32N27C28108.8°110.8°
N27C32H321107.0°109.6°
N27C32H322107.0°109.5°
O30C29C28114.9°109.3°
O30C29H292108.1°109.5°
O30C29H291108.1°109.5°
C29C28N27116.7°109.3°
C29C28H282107.6°109.6°
C29C28H281107.6°109.5°
C28C29H292108.1°109.5°
C28C29H291108.1°109.5°
C26N27C28110.0°111.0°
N27C26C25116.7°109.5°
N27C26H262107.7°109.5°
N27C26H261107.6°109.5°
N27C28H282107.6°109.5°
N27C28H281107.6°109.5°
C26C25N33117.0°119.5°
C26C25C24120.7°119.5°
C25C26H262107.6°109.4°
C25C26H261107.6°109.5°
N33C25C24122.4°121.0°
C25N33C34117.3°121.9°
C25C24C23119.8°119.4°
C25C24H241120.1°120.3°
N33C34C22123.6°120.6°
N33C34H341118.2°119.7°
C24C23C22117.7°118.3°
C24C23H231121.2°120.9°
C23C24H241120.1°120.3°
C34C22C23119.3°118.9°
C34C22C21119.4°120.6°
C22C34H341118.2°119.7°
C23C22C21121.4°120.6°
C22C23H231121.2°120.8°
C22C21C17126.5°126.7°
C22C21C35128.0°126.8°
O20C18C17118.0°120.0°
O20C18O19122.0°120.0°
C17C18O19119.6°120.0°
C18C17C21130.2°125.6°
C18C17N16119.7°125.5°
C18O19H1109.5°114.0°
C17C21C35105.3°106.5°
C21C17N16109.9°108.9°
C21C35C36133.5°133.6°
C21C35C15108.8°106.5°
C17N16C15109.2°110.1°
C17N16H161125.4°124.9°
C36C35C15117.6°120.0°
C35C36C37119.3°119.8°
C35C36H361120.4°120.1°
C35C15N16106.8°108.0°
C35C15C14123.0°119.2°
C36C37C38121.7°120.5°
C37C36H361120.4°120.1°
C36C37H371119.1°119.8°
N16C15C14130.1°132.8°
C15N16H161125.4°125.0°
C15C14C38117.3°119.8°
C15C14C02121.5°120.1°
C37C38C14121.0°120.7°
C38C37H371119.2°119.7°
C37C38H381119.5°119.7°
O05C04C06128.1°120.0°
O05C04O03123.4°120.0°
C38C14C02121.2°120.1°
C14C38H381119.5°119.6°
C14C02O03109.2°109.5°
C14C02C01111.6°109.5°
C14C02H021109.4°109.5°
C06C04O03108.4°120.0°
C04C06C07121.7°120.2°
C04C06C13118.4°120.1°
C04O03C02116.5°117.0°
C06C07C08119.2°119.8°
C07C06C13119.8°119.7°
C06C07H071120.4°120.0°
C07C08C09121.7°120.2°
C08C07H071120.4°120.1°
C07C08H081119.2°119.9°
O03C02C01105.2°109.5°
O03C02H021111.3°109.5°
C02C01H013109.5°109.4°
C02C01H012109.5°109.5°
C02C01H011109.5°109.5°
C01C02H021110.1°109.4°
C06C13C12119.4°119.8°
C06C13H131120.3°120.0°
C08C09C12117.2°120.3°
C08C09C10119.8°119.9°
C09C08H081119.1°119.9°
C12C09C10123.0°119.8°
C09C12C13122.4°120.1°
C09C12H121118.8°119.9°
C09C10N11107.3°109.5°
C09C10H101110.0°109.5°
C09C10H102110.0°109.5°
C12C13H131120.3°120.1°
C13C12H121118.8°119.9°
N11C10H101110.0°109.5°
N11C10H102110.0°109.5°
C10N11H111109.5°111.0°
C10N11H112109.5°111.0°
H101C10H102109.4°109.4°
H013C01H012109.5°109.4°
H013C01H011109.5°109.5°
H012C01H011109.5°109.5°
H262C26H261109.4°109.5°
H282C28H281109.5°109.5°
H292C29H291109.5°109.5°
H311C31H312109.4°109.6°
H321C32H322109.5°109.5°
H111N11H112109.5°111.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C32C31O30H311121.3°119.9°
C32C31O30H312121.3°119.9°
C31C32N27H321121.4°120.0°
C31C32N27H322121.4°119.9°
C32C31O30C2926.6°58.7°
C31C32N27C26152.2°177.7°
C31C32N27C2830.6°58.6°
C32C31H311H312116.1°120.1°
C31C32H321H322115.6°120.1°
O30C31C32N278.9°56.8°
C31O30C29C283.6°58.7°
C31O30C29H292117.2°61.2°
C31O30C29H291124.4°178.7°
O30C31H311H312116.0°120.1°
O30C31C32H321112.4°176.8°
O30C31C32H322130.3°63.1°
C32N27C28C2955.1°58.7°
C32N27C26C28120.9°123.6°
C32N27C26C25161.5°170.0°
C32N27C26H26240.4°70.0°
C32N27C26H26177.5°50.0°
C32N27C28H28265.9°61.3°
C32N27C28H281176.1°178.6°
N27C32C31H311112.4°176.8°
N27C32C31H312130.2°63.1°
N27C32H321H322115.6°120.1°
O30C29C28H292120.8°120.0°
O30C29C28H291120.8°119.9°
O30C29C28N2739.7°56.9°
O30C29C28H28281.4°63.0°
O30C29C28H281160.7°176.9°
O30C29H292H291117.5°120.1°
C29O30C31H31194.7°178.6°
C29O30C31H312147.9°61.2°
C29C28N27C26177.7°177.6°
C29C28N27H282121.1°120.0°
C29C28N27H281121.0°119.9°
C29C28H282H281116.7°120.2°
C28C29H292H291117.5°120.1°
N27C26C25H262121.1°120.0°
N27C26C25H261121.1°120.0°
N27C26C25N3381.9°85.0°
N27C26C25C2497.3°95.2°
N27C26H262H261116.7°120.1°
C26N27C28H28256.6°62.4°
C26N27C28H28161.3°57.6°
C26N27C32H32186.4°57.7°
C26N27C32H32230.8°62.4°
C28N27C26C2577.7°66.4°
C28N27C26H262161.3°53.6°
C28N27C26H26143.4°173.6°
N27C28H282H281116.7°120.1°
N27C28C29H292160.5°63.0°
N27C28C29H29181.1°176.9°
C28N27C32H321152.0°178.5°
C28N27C32H32290.7°61.3°
C26C25N33C24179.2°179.8°
C26C25N33C34178.9°180.0°
C26C25C24C23178.7°179.7°
C26C25C24H2411.3°0.2°
C25C26H262H261116.7°120.0°
N33C25C24C232.1°0.1°
C25N33C34C222.1°0.5°
N33C25C24H241177.9°180.0°
N33C25C26H262157.1°35.0°
N33C25C26H26139.2°155.0°
C25N33C34H341177.9°179.7°
C24C25N33C340.2°0.2°
C25C24C23H241180.0°179.9°
C25C24C23C222.6°0.1°
C25C24C23H231177.4°180.0°
C24C25C26H26223.7°144.8°
C24C25C26H261141.6°24.8°
N33C34C22H341180.0°179.7°
N33C34C22C231.5°0.5°
N33C34C22C21178.6°179.8°
C24C23C22C340.9°0.2°
C24C23C22H231180.0°180.0°
C24C23C22C21179.0°179.9°
C34C22C23C21179.9°179.7°
C34C22C21C17135.1°115.3°
C34C22C21C3551.1°64.6°
C34C22C23H231179.1°179.8°
C23C22C21C1745.0°65.0°
C23C22C21C35128.8°115.1°
C22C23C24H241177.4°180.0°
C23C22C34H341178.4°179.7°
C22C21C17C1810.0°0.2°
C22C21C17C35175.0°180.0°
C22C21C17N16175.0°179.9°
C22C21C35C366.5°0.2°
C22C21C35C15175.4°179.9°
C21C22C23H2311.1°0.0°
C21C22C34H3411.4°0.0°
O20C18C17O19173.2°179.9°
O20C18C17C2132.7°0.2°
O20C18C17N16141.9°179.9°
O20C18O19H10.0°0.1°
C18C17C21N16175.0°179.7°
C18C17C21C35175.0°179.8°
C18C17N16C15175.1°180.0°
C17C18O19H1172.9°180.0°
C18C17N16H1614.9°0.3°
O19C18C17C21154.1°179.7°
O19C18C17N1631.3°0.0°
C17C21C35C36178.6°179.8°
C17C21C35C150.6°0.1°
C21C17N16C150.5°0.3°
C21C17N16H161179.5°179.9°
C35C21C17N160.0°0.1°
C21C35C36C15177.9°180.0°
C21C35C36C37174.7°180.0°
C21C35C15N160.9°0.3°
C21C35C15C14175.4°180.0°
C21C35C36H3615.3°0.1°
C17N16C15C350.9°0.3°
C17N16C15H161180.0°179.7°
C17N16C15C14175.1°180.0°
C35C36C37H361180.0°179.9°
C36C35C15N16179.3°179.7°
C36C35C15C143.0°0.0°
C35C36C37C380.2°0.0°
C35C36C37H371179.8°180.0°
C15C35C36C373.2°0.0°
C35C15N16C14175.9°179.6°
C35C15C14C380.3°0.0°
C35C15C14C02180.0°180.0°
C15C35C36H361176.8°180.0°
C35C15N16H161179.2°180.0°
C36C37C38H371180.0°179.9°
C36C37C38C143.3°0.0°
C36C37C38H381176.7°180.0°
N16C15C14C38175.0°179.6°
N16C15C14C024.6°0.4°
C15C14C38C373.5°0.0°
C15C14C38C02179.6°180.0°
C15C14C02O03119.7°155.0°
C15C14C02C01124.4°85.0°
C15C14C02H0212.3°35.0°
C15C14C38H381176.6°180.0°
C14C15N16H1614.9°0.3°
C37C38C14H381180.0°180.0°
C37C38C14C02176.9°180.0°
C38C37C36H361179.8°180.0°
O05C04C06O03177.2°179.9°
O05C04C06C073.4°180.0°
O05C04O03C021.9°0.1°
O05C04C06C13173.9°0.0°
C38C14C02O0359.9°25.0°
C38C14C02C0156.0°95.0°
C38C14C02H021178.1°145.0°
C14C38C37H371176.7°180.0°
C14C02O03C0481.2°150.0°
C14C02O03C01119.9°120.0°
C14C02O03H021120.9°120.0°
C14C02C01H021121.6°120.0°
C14C02C01H013180.0°60.0°
C14C02C01H01260.0°59.9°
C14C02C01H01160.0°180.0°
C02C14C38H3813.1°0.0°
C04C06C07C13177.4°180.0°
C04C06C07C08179.1°180.0°
C06C04O03C02179.3°180.0°
C04C06C13C12176.3°180.0°
C04C06C13H1313.7°0.3°
C04C06C07H0710.9°0.1°
O03C04C06C07179.3°0.1°
C04O03C02C01158.9°89.9°
O03C04C06C133.3°179.9°
C04O03C02H02139.7°30.0°
C06C07C08H071180.0°179.9°
C06C07C08C096.7°0.3°
C07C06C13C121.1°0.0°
C07C06C13H131178.9°179.7°
C06C07C08H081173.3°180.0°
C08C07C06C133.5°0.0°
C07C08C09H081180.0°179.7°
C07C08C09C125.0°0.6°
C07C08C09C10176.7°180.0°
O03C02C01H021120.1°119.9°
O03C02C01H01361.7°60.1°
O03C02C01H01258.3°180.0°
O03C02C01H011178.3°59.9°
C02C01H013H012120.0°119.9°
C02C01H013H011120.0°120.0°
C02C01H012H011120.0°120.1°
C06C13C12C092.9°0.3°
C06C13C12H131180.0°179.7°
C06C13C12H121177.1°179.8°
C13C06C07H071176.5°179.9°
C08C09C12C10178.2°179.5°
C08C09C12C130.2°0.6°
C08C09C10N11108.4°90.0°
C08C09C12H121179.8°179.5°
C08C09C10H10111.3°150.0°
C08C09C10H102131.9°30.0°
C09C08C07H071173.3°179.8°
C09C12C13H121180.0°179.9°
C12C09C10N1169.8°90.5°
C09C12C13H131177.1°180.0°
C12C09C10H101170.5°29.5°
C12C09C10H10249.9°149.5°
C12C09C08H081175.0°179.7°
C10C09C12C13178.4°180.0°
C09C10N11H101119.7°120.0°
C09C10N11H102119.7°120.0°
C10C09C12H1211.6°0.1°
C09C10H101H102121.0°120.0°
C10C09C08H0813.3°0.2°
C09C10N11H111180.0°56.1°
C09C10N11H11260.0°180.0°
N11C10H101H102121.0°120.0°
C10N11H111H112120.0°124.0°
H131C13C12H1212.9°0.1°
H101C10N11H11160.3°64.0°
H101C10N11H112179.7°60.0°
H102C10N11H11160.3°176.1°
H102C10N11H11259.7°59.9°
H013C01H012H011120.0°120.0°
H013C01C02H02158.4°NaN°
H012C01C02H021178.3°60.1°
H011C01C02H02161.6°60.0°
H071C07C08H0816.7°0.1°
H231C23C24H2412.6°0.0°
H282C28C29H29239.4°177.0°
H282C28C29H291157.8°56.9°
H281C28C29H29278.5°56.9°
H281C28C29H29139.9°63.2°
H311C31C32H321126.3°63.2°
H311C31C32H3229.0°56.9°
H312C31C32H3218.8°57.0°
H312C31C32H322108.5°177.0°
H361C36C37H3710.2°0.1°
H371C37C38H3813.3°0.0°

246905

PDB entries from 2025-12-31

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