Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryGeometryRelated PDB entries

XNB

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
S02C01sing1.81Å1.82Å
C01H01sing1.09Å1.10Å
C01H01Asing1.09Å1.10Å
C01H01Bsing1.09Å1.10Å
C03S02sing1.76Å1.78Å
C08C03doub1.40Å1.43ÅAromatic
C03C04sing1.39Å1.41ÅAromatic
C05C04doub1.38Å1.40ÅAromatic
C04H04sing1.08Å1.08Å
C06C05sing1.38Å1.40ÅAromatic
C05H05sing1.08Å1.08Å
C07C06doub1.38Å1.41ÅAromatic
C06H06sing1.08Å1.08Å
C07C08sing1.39Å1.41ÅAromatic
C07H07sing1.08Å1.08Å
N09C08sing1.40Å1.47Å
C10N09sing1.38Å1.42Å
N09HN09sing0.97Å1.00Å
N11C10doub1.33Å1.38ÅAromatic
C19C10sing1.46Å1.45ÅAromatic
C12N11sing1.33Å1.43ÅAromatic
N25C12sing1.38Å1.45Å
N13C12doub1.32Å1.40ÅAromatic
N13C14sing1.34Å1.39ÅAromatic
C15C14doub1.41Å1.56ÅAromatic
C14C19sing1.41Å1.42ÅAromatic
N20C15sing1.38Å1.42Å
C15N16sing1.33Å1.36ÅAromatic
N16C17doub1.32Å1.40ÅAromatic
C17N18sing1.31Å1.33ÅAromatic
C17H17sing1.08Å1.08Å
C19N18doub1.33Å1.40ÅAromatic
C21N20sing1.47Å1.47Å
N20HN20sing0.97Å1.00Å
C22C21sing1.53Å1.52Å
C21H21sing1.09Å1.10Å
C21H21Asing1.09Å1.10Å
C24C22sing1.53Å1.54Å
C23C22sing1.53Å1.54Å
C22H22sing1.09Å1.10Å
C24C23sing1.53Å1.50Å
C23H23sing1.09Å1.10Å
C23H23Asing1.09Å1.10Å
C24H24sing1.09Å1.10Å
C24H24Asing1.09Å1.10Å
C26N25sing1.47Å1.49Å
N25C30sing1.47Å1.50Å
C27C26sing1.53Å1.56Å
C26H26sing1.09Å1.10Å
C26H26Asing1.09Å1.10Å
C27N28sing1.47Å1.47Å
C27H27sing1.09Å1.10Å
C27H27Asing1.09Å1.10Å
N28C29sing1.47Å1.47Å
N28HN28sing1.01Å1.00Å
C29C30sing1.53Å1.56Å
C29H29sing1.09Å1.10Å
C29H29Asing1.09Å1.10Å
C30H30sing1.09Å1.10Å
C30H30Asing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
S02C01H01109.5°109.5°
S02C01H01A109.5°109.5°
S02C01H01B109.5°109.4°
C01S02C03109.2°103.0°
H01C01H01A109.5°109.5°
H01C01H01B109.5°109.5°
H01AC01H01B109.4°109.5°
S02C03C08113.5°120.1°
S02C03C04123.4°120.1°
C08C03C04123.1°119.8°
C03C08C07115.8°119.8°
C03C08N09117.9°120.2°
C03C04C05119.7°120.0°
C03C04H04120.1°120.0°
C05C04H04120.2°120.0°
C04C05C06118.4°120.3°
C04C05H05120.8°119.9°
C06C05H05120.8°119.9°
C05C06C07121.9°120.2°
C05C06H06119.1°119.9°
C07C06H06119.0°119.9°
C06C07C08121.0°120.0°
C06C07H07119.5°119.9°
C08C07H07119.5°120.0°
C07C08N09126.3°120.1°
C08N09C10126.8°120.0°
C08N09HN09116.6°120.0°
C10N09HN09116.6°119.9°
N09C10N11119.0°121.2°
N09C10C19121.5°121.2°
N11C10C19119.5°117.6°
C10N11C12118.8°121.3°
C10C19C14120.0°117.8°
C10C19N18114.2°122.9°
N11C12N25115.9°118.3°
N11C12N13122.7°123.4°
N25C12N13121.4°118.3°
C12N25C26120.8°111.0°
C12N25C30122.9°111.0°
C12N13C14118.9°120.8°
N13C14C15125.6°123.0°
N13C14C19120.2°119.0°
C15C14C19114.2°118.1°
C14C15N20122.1°121.0°
C14C15N16117.3°118.1°
C14C19N18125.8°119.2°
N20C15N16120.5°120.9°
C15N20C21119.3°120.0°
C15N20HN20106.3°120.0°
C15N16C17120.5°121.6°
N16C17N18127.2°122.8°
N16C17H17116.4°118.6°
N18C17H17116.4°118.6°
C17N18C19114.9°120.3°
C21N20HN20106.3°120.0°
N20C21C22133.3°109.5°
N20C21H21102.2°109.5°
N20C21H21A102.2°109.4°
C22C21H21102.2°109.5°
C22C21H21A102.2°109.5°
C21C22C24121.9°117.5°
C21C22C23118.5°117.5°
C21C22H2289.8°115.6°
H21C21H21A115.7°109.5°
C24C22C2358.6°60.0°
C24C22H22134.2°117.5°
C22C24C2360.7°60.0°
C22C24H24130.5°117.5°
C22C24H24A130.5°117.5°
C23C22H22137.1°117.5°
C22C23C2460.8°59.9°
C22C23H23130.5°117.5°
C22C23H23A130.5°117.5°
C24C23H23130.5°117.5°
C24C23H23A130.5°117.5°
C23C24H24130.5°117.5°
C23C24H24A130.5°117.5°
H23C23H23A82.4°115.6°
H24C24H24A82.4°115.6°
C26N25C30115.6°110.8°
N25C26C27119.7°109.4°
N25C26H26106.2°109.4°
N25C26H26A106.2°109.5°
N25C30C29117.4°109.4°
N25C30H30106.9°109.5°
N25C30H30A106.9°109.5°
C27C26H26106.2°109.5°
C27C26H26A106.2°109.5°
C26C27N28117.0°109.4°
C26C27H27107.0°109.5°
C26C27H27A107.0°109.5°
H26C26H26A112.6°109.5°
N28C27H27107.0°109.4°
N28C27H27A107.0°109.5°
C27N28C29113.8°110.9°
C27N28HN28108.0°111.0°
H27C27H27A111.8°109.5°
C29N28HN28108.1°111.0°
N28C29C30114.1°109.4°
N28C29H29108.0°109.4°
N28C29H29A108.0°109.5°
C30C29H29107.9°109.5°
C30C29H29A108.0°109.5°
C29C30H30106.9°109.5°
C29C30H30A106.9°109.5°
H29C29H29A110.9°109.5°
H30C30H30A111.9°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
S02C01H01H01A120.0°120.0°
S02C01H01H01B120.0°119.9°
S02C01H01AH01B120.0°119.9°
C01S02C03C08105.0°179.7°
C01S02C03C0475.0°0.0°
H01C01H01AH01B120.0°120.0°
H01C01S02C03180.0°180.0°
H01AC01S02C0360.0°60.0°
H01BC01S02C0360.0°60.0°
S02C03C08C04180.0°179.7°
S02C03C04C05179.2°180.0°
S02C03C04H040.8°0.1°
S02C03C08C07179.2°179.7°
S02C03C08N090.7°0.3°
C08C03C04C050.8°0.4°
C08C03C04H04179.2°179.7°
C03C08C07C060.5°0.6°
C03C08C07N09178.4°179.4°
C03C08C07H07179.6°179.7°
C03C08N09C10148.1°160.9°
C03C08N09HN0931.9°19.0°
C03C04C05H04180.0°179.9°
C03C04C05C060.4°0.1°
C03C04C05H05179.6°180.0°
C04C03C08C070.8°0.6°
C04C03C08N09179.3°180.0°
C04C05C06H05180.0°179.9°
C04C05C06C070.1°0.1°
C04C05C06H06180.0°180.0°
H04C04C05C06179.6°180.0°
H04C04C05H050.4°0.1°
C05C06C07H06180.0°179.9°
C05C06C07C080.1°0.3°
C05C06C07H07179.9°179.9°
H05C05C06C07179.9°180.0°
H05C05C06H060.1°0.1°
C06C07C08H07180.0°179.7°
C06C07C08N09178.8°180.0°
H06C06C07C08179.9°179.8°
H06C06C07H070.1°0.0°
C07C08N09C1033.5°19.7°
C07C08N09HN09146.5°160.4°
H07C07C08N091.2°0.2°
C08N09C10HN09180.0°179.9°
C08N09C10N1111.7°6.4°
C08N09C10C19168.1°173.9°
N09C10N11C19179.8°179.7°
N09C10N11C12179.3°180.0°
N09C10C19C14179.5°179.7°
N09C10C19N180.5°0.6°
HN09N09C10N11168.3°173.5°
HN09N09C10C1911.9°6.2°
C10N11C12N25179.4°180.0°
C10N11C12N130.3°0.1°
N11C10C19C140.3°0.5°
N11C10C19N18179.7°179.7°
C19C10N11C120.5°0.3°
C10C19C14N130.0°0.5°
C10C19C14C15179.5°179.7°
C10C19C14N18180.0°179.2°
C10C19N18C17179.3°179.7°
N11C12N25N13179.8°179.9°
N11C12N13C140.0°0.1°
N11C12N25C26171.5°123.7°
N11C12N25C301.5°0.0°
N25C12N13C14179.8°180.0°
C12N25C26C30170.7°123.9°
C12N25C26C27169.8°176.8°
C12N25C26H2649.8°56.9°
C12N25C26H26A70.2°63.2°
C12N25C30C29161.6°176.8°
C12N25C30H3078.4°63.2°
C12N25C30H30A41.6°56.8°
C12N13C14C15179.6°179.9°
C12N13C14C190.2°0.2°
N13C12N25C268.7°56.1°
N13C12N25C30178.7°179.9°
N13C14C15C19179.5°179.7°
N13C14C15N201.4°0.0°
N13C14C15N16179.6°180.0°
N13C14C19N18180.0°179.7°
C14C15N20N16179.0°180.0°
C14C15N16C170.0°0.0°
C15C14C19N180.5°0.6°
C14C15N20C2112.6°180.0°
C14C15N20HN20132.6°0.0°
C19C14C15N20179.2°179.8°
C19C14C15N160.1°0.3°
C14C19N18C170.7°0.6°
N20C15N16C17179.1°180.0°
C15N20C21HN20120.0°179.9°
C15N20C21C22154.3°180.0°
C15N20C21H2134.3°60.0°
C15N20C21H21A85.7°60.0°
C15N16C17N180.3°0.0°
C15N16C17H17179.7°180.0°
N16C15N20C21168.4°0.1°
N16C15N20HN2048.4°180.0°
N16C17N18H17180.0°180.0°
N16C17N18C190.6°0.3°
H17C17N18C19179.4°179.7°
N20C21C22H21120.0°120.0°
N20C21C22H21A120.0°119.9°
N20C21H21H21A110.1°120.0°
N20C21C22C24129.2°116.3°
N20C21C22C23162.0°175.0°
N20C21C22H2215.7°29.4°
HN20N20C21C2285.7°0.1°
HN20N20C21H21154.3°119.9°
HN20N20C21H21A34.3°120.0°
C22C21H21H21A110.1°120.0°
C21C22C24C23106.2°107.5°
C21C22C24H22126.7°145.0°
C21C22C23H22125.3°144.9°
C21C22C23H238.2°0.1°
C21C22C23H23A128.2°145.0°
C21C22C24H24133.8°145.1°
C21C22C24H24A13.8°0.0°
H21C21C22C249.2°3.7°
H21C21C22C2378.0°65.0°
H21C21C22H22135.7°149.4°
H21AC21C22C24110.8°123.8°
H21AC21C22C2341.9°55.1°
H21AC21C22H22104.3°90.5°
C24C22C23H22122.8°107.5°
C22C24C23H24120.0°107.5°
C22C24C23H24A120.0°107.5°
C22C24C23H23120.0°107.5°
C22C24C23H23A120.0°107.5°
C22C24H24H24A138.4°145.7°
C22C23H23H23A138.4°145.7°
H22C22C23H23117.2°145.0°
H22C22C23H23A2.8°0.1°
H22C22C24H247.1°0.0°
H22C22C24H24A112.9°145.0°
C24C23H23H23A138.3°145.7°
C23C24H24H24A138.4°145.6°
H23C23C24H24120.0°145.0°
H23C23C24H24A0.0°0.0°
H23AC23C24H240.0°0.1°
H23AC23C24H24A120.0°145.0°
N25C26C27H26120.0°119.9°
N25C26C27H26A120.0°120.0°
N25C26H26H26A115.7°120.0°
N25C26C27N2826.5°58.4°
N25C26C27H2793.5°61.5°
N25C26C27H27A146.5°178.4°
C26N25C30C2927.9°59.3°
C26N25C30H3092.1°60.7°
C26N25C30H30A147.9°179.3°
C30N25C26C2719.5°59.4°
C30N25C26H26139.4°179.3°
C30N25C26H26A100.5°60.7°
N25C30C29N2843.8°58.4°
N25C30C29H30120.0°120.0°
N25C30C29H30A120.0°119.9°
N25C30C29H2976.2°61.5°
N25C30C29H29A163.8°178.4°
N25C30H30H30A116.7°120.0°
C27C26H26H26A115.8°120.1°
C26C27N28H27120.0°119.9°
C26C27N28H27A120.0°120.0°
C26C27H27H27A116.9°120.1°
C26C27N28C2941.3°59.3°
C26C27N28HN28161.3°176.8°
H26C26C27N28146.5°178.3°
H26C26C27H2726.5°58.4°
H26C26C27H27A93.5°61.7°
H26AC26C27N2893.5°61.6°
H26AC26C27H27146.6°178.5°
H26AC26C27H27A26.5°58.4°
N28C27H27H27A116.9°120.0°
C27N28C29HN28120.0°123.9°
C27N28C29C3049.5°59.3°
C27N28C29H2970.4°60.7°
C27N28C29H29A169.6°179.3°
H27C27N28C2978.7°60.7°
H27C27N28HN2841.3°63.3°
H27AC27N28C29161.3°179.3°
H27AC27N28HN2878.7°56.8°
N28C29C30H29120.0°119.9°
N28C29C30H29A120.0°120.0°
N28C29H29H29A118.1°120.0°
N28C29C30H3076.2°61.6°
N28C29C30H30A163.8°178.3°
HN28N28C29C30169.5°176.8°
HN28N28C29H2949.6°63.3°
HN28N28C29H29A70.4°56.8°
C30C29H29H29A118.1°120.1°
C29C30H30H30A116.8°120.0°
H29C29C30H30163.8°178.4°
H29C29C30H30A43.8°58.4°
H29AC29C30H3043.8°58.4°
H29AC29C30H30A76.2°61.6°

247536

PDB entries from 2026-01-14

PDB statisticsPDBj update infoContact PDBjnumon