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XMD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2sing1.36Å1.46ÅAromatic
C1C6doub1.41Å1.46ÅAromatic
C1H1sing1.08Å1.08Å
C2C5doub1.39Å1.48ÅAromatic
C2S12sing1.76Å1.76Å
C3C4doub1.41Å1.48ÅAromatic
C3C6sing1.42Å1.53ÅAromatic
C3C9sing1.40Å1.47ÅAromatic
C4C5sing1.36Å1.44ÅAromatic
C4H4sing1.08Å1.08Å
C5H5sing1.08Å1.08Å
C6C8sing1.40Å1.47ÅAromatic
CL7C11sing1.74Å1.77Å
C8C10doub1.36Å1.43ÅAromatic
C8H8sing1.08Å1.08Å
C9C11doub1.36Å1.45ÅAromatic
C9H9sing1.08Å1.08Å
C10C11sing1.39Å1.47ÅAromatic
C10H10sing1.08Å1.08Å
S12O13doub1.42Å1.55Å
S12N21sing1.66Å1.73Å
S12O26doub1.42Å1.54Å
C14C15sing1.51Å1.55Å
C14C20sing1.53Å1.57Å
C14N25sing1.46Å1.54Å
C14H14sing1.09Å1.10Å
C15O16sing1.34Å1.38Å
C15O19doub1.21Å1.22Å
O16C17sing1.45Å1.48Å
C17C18sing1.53Å1.54Å
C17H171sing1.09Å1.10Å
C17H172sing1.09Å1.10Å
C18H181sing1.09Å1.10Å
C18H182sing1.09Å1.10Å
C18H183sing1.09Å1.10Å
C20N21sing1.47Å1.50Å
C20H201sing1.09Å1.10Å
C20H202sing1.09Å1.10Å
N21C24sing1.47Å1.50Å
C22O23doub1.21Å1.23Å
C22C24sing1.50Å1.57Å
C22N25sing1.33Å1.45Å
C24H241sing1.09Å1.10Å
C24H242sing1.09Å1.10Å
N25C27sing1.47Å1.51Å
C27C35sing1.53Å1.57Å
C27H271sing1.09Å1.10Å
C27H272sing1.09Å1.10Å
C28C31doub1.38Å1.44ÅAromatic
C28N37sing1.32Å1.39ÅAromatic
C28H28sing1.08Å1.08Å
N29C30sing1.39Å1.51Å
N29C32sing1.47Å1.52Å
N29C34sing1.47Å1.52Å
C30C31sing1.39Å1.48ÅAromatic
C30C33doub1.40Å1.49ÅAromatic
C31H31sing1.08Å1.08Å
C32C36sing1.53Å1.56Å
C32H321sing1.09Å1.10Å
C32H322sing1.09Å1.10Å
C33C38sing1.38Å1.44ÅAromatic
C33H33sing1.08Å1.08Å
C34C39sing1.53Å1.57Å
C34H341sing1.09Å1.10Å
C34H342sing1.09Å1.10Å
C35C36sing1.53Å1.59Å
C35C39sing1.53Å1.60Å
C35H35sing1.09Å1.10Å
C36H361sing1.09Å1.10Å
C36H362sing1.09Å1.10Å
N37C38doub1.32Å1.38ÅAromatic
C38H38sing1.08Å1.08Å
C39H391sing1.09Å1.10Å
C39H392sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1C6122.1°119.7°
C2C1H1119.0°120.2°
C1C2C5118.2°121.0°
C1C2S12120.9°119.5°
C6C1H1119.0°120.2°
C1C6C3118.7°119.3°
C1C6C8122.9°121.3°
C5C2S12120.8°119.5°
C2C5C4122.2°121.0°
C2C5H5118.9°119.5°
C2S12O13111.3°105.7°
C2S12N21111.4°107.4°
C2S12O26110.4°105.8°
C4C3C6118.3°119.4°
C4C3C9123.1°121.3°
C3C4C5120.4°119.7°
C3C4H4119.8°120.2°
C6C3C9118.5°119.3°
C3C6C8118.4°119.4°
C3C9C11121.4°119.7°
C3C9H9119.3°120.2°
C5C4H4119.8°120.2°
C4C5H5118.9°119.5°
C6C8C10120.6°119.7°
C6C8H8119.7°120.2°
CL7C11C9120.6°119.5°
CL7C11C10120.2°119.6°
C10C8H8119.7°120.2°
C8C10C11121.9°121.0°
C8C10H10119.1°119.5°
C11C9H9119.3°120.2°
C9C11C10119.1°120.9°
C11C10H10119.1°119.5°
O13S12N21107.4°105.8°
O13S12O26108.2°125.4°
N21S12O26108.0°105.7°
S12N21C20118.3°121.4°
S12N21C24117.0°121.3°
C15C14C20110.7°109.2°
C15C14N25120.5°109.2°
C15C14H14101.6°109.2°
C14C15O16112.7°120.0°
C14C15O19123.0°120.0°
C20C14N25113.6°110.8°
C20C14H14110.9°109.2°
C14C20N21112.7°108.2°
C14C20H201107.7°109.7°
C14C20H202108.4°109.7°
N25C14H1497.6°109.2°
C14N25C22120.4°124.6°
C14N25C27120.1°117.7°
O16C15O19124.3°120.0°
C15O16C17119.4°120.0°
O16C17C18110.2°109.4°
O16C17H171109.1°109.4°
O16C17H172109.3°109.5°
C18C17H171109.1°109.4°
C18C17H172109.2°109.4°
C17C18H181109.5°109.5°
C17C18H182109.5°109.4°
C17C18H183109.5°109.5°
H171C17H172110.0°109.6°
H181C18H182109.5°109.5°
H181C18H183109.5°109.5°
H182C18H183109.5°109.5°
N21C20H201107.7°109.7°
N21C20H202108.4°109.7°
C20N21C24115.5°117.3°
H201C20H202112.0°109.8°
N21C24C22119.6°108.9°
N21C24H241103.9°109.6°
N21C24H242106.2°109.6°
O23C22C24116.8°118.5°
O23C22N25124.7°118.5°
C24C22N25118.5°123.0°
C22C24H241103.9°109.6°
C22C24H242106.2°109.6°
C22N25C27119.5°117.7°
H241C24H242117.8°109.6°
N25C27C35119.3°109.4°
N25C27H271104.0°109.5°
N25C27H272106.3°109.4°
C35C27H271104.0°109.5°
C35C27H272106.3°109.5°
C27C35C36113.4°109.6°
C27C35C39117.2°109.6°
C27C35H35103.9°109.6°
H271C27H272117.5°109.5°
C31C28N37122.9°120.9°
C31C28H28118.6°119.6°
C28C31C30119.5°119.1°
C28C31H31120.3°120.5°
N37C28H28118.6°119.6°
C28N37C38119.4°121.9°
C30N29C32122.8°106.7°
C30N29C34122.9°106.7°
N29C30C31122.0°120.9°
N29C30C33122.0°120.8°
C32N29C34114.2°107.4°
N29C32C36115.5°109.8°
N29C32H321106.1°109.4°
N29C32H322107.5°109.5°
N29C34C39115.4°109.8°
N29C34H341106.2°109.4°
N29C34H342107.5°109.4°
C31C30C33116.0°118.2°
C30C31H31120.2°120.4°
C30C33C38119.4°119.1°
C30C33H33120.3°120.5°
C36C32H321106.1°109.3°
C36C32H322107.5°109.4°
C32C36C35117.2°109.3°
C32C36H361105.2°109.5°
C32C36H362107.0°109.5°
H321C32H322114.3°109.4°
C38C33H33120.3°120.5°
C33C38N37122.8°120.9°
C33C38H38118.6°119.6°
C39C34H341106.2°109.4°
C39C34H342107.5°109.4°
C34C39C35117.0°109.2°
C34C39H391105.3°109.5°
C34C39H392107.1°109.5°
H341C34H342114.2°109.4°
C36C35C39117.5°108.9°
C36C35H35103.5°109.5°
C35C36H361105.2°109.5°
C35C36H362107.0°109.5°
C39C35H3597.6°109.7°
C35C39H391105.3°109.5°
C35C39H392107.0°109.5°
H361C36H362115.8°109.6°
N37C38H38118.6°119.5°
H391C39H392115.6°109.6°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1C6H1180.0°179.7°
C1C2C5S12179.9°179.6°
C2C1C6C30.1°0.6°
C1C2C5C40.1°0.4°
C1C2C5H5179.9°179.7°
C2C1C6C8179.7°179.8°
C1C2S12O1317.4°157.1°
C1C2S12N21102.4°90.3°
C1C2S12O26137.5°22.3°
C6C1C2C50.2°0.6°
C6C1C2S12179.7°179.7°
C1C6C3C40.1°0.3°
C1C6C3C8179.8°179.6°
C1C6C3C9179.7°179.7°
C1C6C8C10179.6°179.7°
C1C6C8H80.4°0.4°
H1C1C2C5179.9°179.6°
H1C1C2S120.3°0.0°
H1C1C6C3179.9°179.6°
H1C1C6C80.2°0.0°
C2C5C4C30.0°0.1°
C2C5C4H5180.0°179.9°
C2C5C4H4180.0°179.8°
C5C2S12O13162.5°22.5°
C5C2S12N2177.7°90.1°
C5C2S12O2642.3°157.4°
S12C2C5C4179.8°180.0°
S12C2C5H50.2°0.1°
C2S12O13N21122.2°113.7°
C2S12O13O26121.5°123.2°
C2S12N21O26121.4°112.6°
C2S12N21C2048.8°90.0°
C2S12N21C2496.5°90.0°
C4C3C6C9179.7°180.0°
C3C4C5H4180.0°179.9°
C3C4C5H5180.0°180.0°
C4C3C6C8179.9°179.9°
C4C3C9C11179.7°180.0°
C4C3C9H90.3°0.1°
C6C3C4C50.1°0.1°
C6C3C4H4179.9°179.9°
C3C6C8C100.2°0.1°
C3C6C8H8179.8°180.0°
C6C3C9C110.0°0.0°
C6C3C9H9180.0°179.9°
C9C3C4C5179.6°180.0°
C9C3C4H40.4°0.1°
C9C3C6C80.1°0.1°
C3C9C11CL7179.7°180.0°
C3C9C11H9180.0°179.9°
C3C9C11C100.1°0.1°
H4C4C5H50.0°0.1°
C6C8C10H8180.0°180.0°
C6C8C10C110.1°0.0°
C6C8C10H10179.9°180.0°
CL7C11C10C8179.8°180.0°
CL7C11C9C10179.8°179.9°
CL7C11C9H90.3°0.1°
CL7C11C10H100.2°0.0°
C8C10C11C90.0°0.1°
C8C10C11H10180.0°180.0°
H8C8C10C11179.9°180.0°
H8C8C10H100.1°0.0°
C9C11C10H10180.0°180.0°
H9C9C11C10179.9°180.0°
O13S12N21O26116.5°134.8°
O13S12N21C2073.3°157.4°
O13S12N21C24141.4°22.6°
S12N21C20C14166.5°118.5°
S12N21C20C24145.8°180.0°
S12N21C20H20174.9°1.2°
S12N21C20H20246.5°121.9°
S12N21C24C22169.2°137.2°
S12N21C24H24154.2°17.4°
S12N21C24H24270.7°102.9°
O26S12N21C20170.3°22.6°
O26S12N21C2424.9°157.4°
C15C14C20N25139.2°120.4°
C15C14C20H14112.0°119.4°
C15C14N25H14108.3°119.4°
C14C15O16O19178.5°179.9°
C14C15O16C17127.1°180.0°
C15C14C20N21171.2°167.1°
C15C14C20H20170.2°73.3°
C15C14C20H20251.2°47.4°
C15C14N25C22161.3°142.2°
C15C14N25C2719.7°37.8°
C20C14N25H14116.8°120.3°
C20C14C15O1699.6°93.8°
C20C14C15O1981.8°86.2°
C14C20N21H201118.6°119.7°
C14C20N21H202120.0°119.7°
C14C20H201H202119.1°120.6°
C14C20N21C2447.7°61.5°
C20C14N25C2226.5°21.9°
C20C14N25C27154.5°158.1°
N25C14C15O16124.4°144.9°
N25C14C15O1954.2°35.0°
N25C14C20N2149.5°46.7°
N25C14C20H20169.1°166.4°
N25C14C20H202169.5°72.9°
C14N25C22O23179.0°175.7°
C14N25C22C241.7°4.3°
C14N25C22C27179.0°180.0°
C14N25C27C35105.0°95.8°
C14N25C27H271139.7°144.1°
C14N25C27H27215.0°24.1°
H14C14C15O1618.2°25.6°
H14C14C15O19160.3°154.4°
H14C14C20N2159.2°73.5°
H14C14C20H201177.8°46.1°
H14C14C20H20260.8°166.8°
H14C14N25C2290.3°98.4°
H14C14N25C2788.6°81.6°
C15O16C17C18137.6°180.0°
C15O16C17H171102.7°60.1°
C15O16C17H17217.6°60.1°
O19C15O16C1751.4°0.0°
O16C17C18H171119.7°119.9°
O16C17C18H172120.0°120.0°
O16C17H171H172119.8°120.1°
O16C17C18H18172.9°180.0°
O16C17C18H18247.1°60.0°
O16C17C18H183167.1°60.0°
C18C17H171H172119.8°120.0°
C17C18H181H182120.0°120.0°
C17C18H181H183120.0°120.0°
C17C18H182H183120.0°120.0°
H171C17C18H181167.4°60.1°
H171C17C18H18272.6°59.9°
H171C17C18H18347.4°179.9°
H172C17C18H18147.2°60.1°
H172C17C18H182167.1°179.9°
H172C17C18H18372.8°60.0°
H181C18H182H183120.0°120.0°
N21C20H201H202119.1°120.6°
C20N21C24C2222.9°42.8°
C20N21C24H24192.1°162.6°
C20N21C24H242143.0°77.1°
H201C20N21C2470.9°178.8°
H202C20N21C24167.7°58.2°
N21C24C22O23178.4°167.3°
N21C24C22H241115.1°119.8°
N21C24C22H242120.0°119.9°
N21C24C22N251.0°12.7°
N21C24H241H242117.1°120.3°
O23C22C24N25179.3°180.0°
O23C22C24H24163.3°47.5°
O23C22C24H24261.6°72.8°
O23C22N25C270.1°4.3°
C22C24H241H242117.1°120.3°
C24C22N25C27179.4°175.7°
N25C22C24H241116.1°132.5°
N25C22C24H242119.0°107.1°
C22N25C27C3576.1°84.2°
C22N25C27H27139.2°35.8°
C22N25C27H272163.9°155.8°
N25C27C35H271115.3°120.0°
N25C27C35H272120.0°120.0°
N25C27H271H272117.2°120.0°
N25C27C35C36169.6°174.5°
N25C27C35C3927.5°66.1°
N25C27C35H3578.8°54.3°
C35C27H271H272117.2°120.0°
C27C35C36C32126.9°175.4°
C27C35C39C34125.5°175.4°
C27C35C36C39141.9°119.9°
C27C35C36H35111.9°120.2°
C27C35C39H35110.0°120.3°
C27C35C36H36110.5°64.6°
C27C35C36H362113.1°55.5°
C27C35C39H391118.0°55.4°
C27C35C39H3925.5°64.7°
H271C27C35C3675.1°54.5°
H271C27C35C39142.8°173.9°
H271C27C35H3536.5°65.7°
H272C27C35C3649.6°65.6°
H272C27C35C3992.5°53.9°
H272C27C35H35161.2°174.3°
C31C28N37H28180.0°179.8°
C28C31C30N29179.9°179.9°
C28C31C30H31180.0°179.9°
C28C31C30C330.1°0.3°
C31C28N37C380.2°0.1°
N37C28C31C300.2°0.1°
N37C28C31H31179.8°180.0°
C28N37C38C330.1°0.2°
C28N37C38H38179.9°179.9°
H28C28C31C30179.8°180.0°
H28C28C31H310.2°0.1°
H28C28N37C38179.9°180.0°
C30N29C32C34179.3°114.1°
N29C30C31C33179.8°179.7°
N29C30C31H310.1°0.0°
C30N29C32C36127.7°179.7°
C30N29C32H321115.0°59.7°
C30N29C32H3227.7°60.2°
N29C30C33C38179.8°179.7°
N29C30C33H330.2°0.4°
C30N29C34C39127.7°179.8°
C30N29C34H34110.4°59.7°
C30N29C34H342112.3°60.2°
C32N29C30C31179.8°180.0°
C32N29C30C330.0°0.4°
N29C32C36H321117.3°120.0°
N29C32C36H322120.0°120.1°
N29C32H321H322118.3°119.9°
C32N29C34C3951.6°65.6°
C32N29C34H341168.9°54.4°
C32N29C34H34268.4°174.3°
N29C32C36C3533.0°61.3°
N29C32C36H361149.3°178.7°
N29C32C36H36287.0°58.6°
C34N29C30C310.5°65.5°
C34N29C30C33179.2°114.2°
C34N29C32C3651.6°65.6°
C34N29C32H32165.7°54.4°
C34N29C32H322171.6°174.3°
N29C34C39H341117.3°120.1°
N29C34C39H342120.0°120.1°
N29C34H341H342118.3°119.9°
N29C34C39C3532.9°61.4°
N29C34C39H39183.6°58.6°
N29C34C39H392152.9°178.8°
C31C30C33C380.0°0.6°
C31C30C33H33180.0°180.0°
C33C30C31H31179.9°179.7°
C30C33C38H33180.0°179.3°
C30C33C38N370.0°0.6°
C30C33C38H38180.0°179.7°
C36C32H321H322118.3°119.8°
C32C36C35H361116.4°120.0°
C32C36C35H362120.0°119.9°
C32C36C35C3915.0°55.5°
C32C36C35H35121.2°64.4°
C32C36H361H362117.9°120.1°
H321C32C36C3584.3°58.7°
H321C32C36H36132.1°61.2°
H321C32C36H362155.7°178.6°
H322C32C36C35153.0°178.5°
H322C32C36H36190.6°58.6°
H322C32C36H36233.0°61.6°
C33C38N37H38180.0°179.7°
H33C33C38N37180.0°180.0°
H33C33C38H380.0°0.4°
C39C34H341H342118.3°119.8°
C34C39C35C3615.0°55.6°
C34C39C35H391116.5°120.0°
C34C39C35H392120.0°119.9°
C34C39C35H35124.6°64.3°
C34C39H391H392117.9°120.1°
H341C34C39C35150.3°58.7°
H341C34C39H39133.7°178.7°
H341C34C39H39289.7°61.2°
H342C34C39C3587.1°178.5°
H342C34C39H391156.4°61.5°
H342C34C39H39232.9°58.7°
C36C35C39H35109.6°119.8°
C35C36H361H362117.8°120.1°
C36C35C39H391101.5°64.4°
C36C35C39H392135.0°175.5°
C39C35C36H361131.4°175.5°
C39C35C36H362105.0°64.3°
C35C39H391H392117.9°120.1°
H35C35C36H361122.4°55.6°
H35C35C36H3621.2°175.7°
H35C35C39H3918.1°175.8°
H35C35C39H392115.4°55.6°

223532

PDB entries from 2024-08-07

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