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XKK

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C9C10doub1.35Å1.36ÅAromatic
C9N6sing1.34Å1.39ÅAromatic
C10N1sing1.37Å1.40ÅAromatic
N6C6doub1.32Å1.33ÅAromatic
N1C6sing1.37Å1.40ÅAromatic
N1C2sing1.37Å1.40ÅAromatic
C6C5sing1.46Å1.41ÅAromatic
N2C2sing1.38Å1.32Å
C2N3doub1.31Å1.34ÅAromatic
C5N7sing1.35Å1.37ÅAromatic
C5C4doub1.40Å1.40ÅAromatic
N7C8doub1.30Å1.32ÅAromatic
N3C4sing1.34Å1.34ÅAromatic
C4N9sing1.37Å1.39ÅAromatic
C8N9sing1.36Å1.39ÅAromatic
N9C16sing1.46Å1.44Å
C16C2'sing1.55Å1.54Å
C16O4'sing1.44Å1.41Å
O2'C2'sing1.43Å1.42Å
C2'C3'sing1.55Å1.53Å
O4'C4'sing1.44Å1.43Å
C3'C4'sing1.54Å1.54Å
C3'O3'sing1.43Å1.43Å
C4'C5'sing1.53Å1.49Å
C5'O5'sing1.43Å1.47Å
O24C7doub1.21Å1.21Å
O5'S1sing1.52Å1.60Å
N4C7sing1.35Å1.32Å
N4S1sing1.66Å1.69Å
O3S1doub1.42Å1.43Å
C7C11sing1.51Å1.50Å
S1O2doub1.42Å1.40Å
C17N16sing1.37Å1.38ÅAromatic
C17C13doub1.34Å1.37ÅAromatic
N16C15sing1.38Å1.37ÅAromatic
C11C12sing1.53Å1.52Å
C12C13sing1.51Å1.50Å
C13C14sing1.46Å1.45ÅAromatic
C15C14doub1.41Å1.41ÅAromatic
C15C28sing1.39Å1.39ÅAromatic
C14C25sing1.40Å1.40ÅAromatic
C28C27doub1.38Å1.38ÅAromatic
C25C26doub1.37Å1.37ÅAromatic
C27C26sing1.39Å1.39ÅAromatic
C5'H1sing1.09Å1.10Å
C5'H2sing1.09Å1.10Å
C4'H3sing1.09Å1.10Å
C3'H4sing1.09Å1.10Å
O3'H5sing0.97Å0.95Å
C2'H6sing1.09Å1.10Å
O2'H7sing0.97Å0.95Å
C8H8sing1.08Å1.08Å
C9H9sing1.08Å1.08Å
C10H10sing1.08Å1.08Å
N2H11sing0.97Å1.00Å
N2H12sing0.97Å1.00Å
N4H13sing0.97Å1.00Å
C11H14sing1.09Å1.10Å
C11H15sing1.09Å1.10Å
C12H16sing1.09Å1.10Å
C12H17sing1.09Å1.10Å
N16H18sing0.97Å1.00Å
C17H19sing1.08Å1.08Å
C25H20sing1.08Å1.08Å
C26H21sing1.08Å1.08Å
C27H22sing1.08Å1.08Å
C28H23sing1.08Å1.08Å
C16H24sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C10C9N6111.5°108.6°
C9C10N1105.9°107.1°
C10C9H9124.3°125.7°
C9C10H10127.1°126.4°
C9N6C6105.0°109.3°
N6C9H9124.2°125.7°
C10N1C6106.0°106.7°
C10N1C2131.3°133.4°
N1C10H10127.0°126.4°
N6C6N1111.6°108.2°
N6C6C5132.9°134.0°
C6N1C2122.8°119.8°
N1C6C5115.5°117.7°
N1C2N2119.3°118.8°
N1C2N3121.5°122.3°
C6C5N7131.9°134.7°
C6C5C4117.5°117.9°
N2C2N3119.3°118.9°
C2N2H11109.5°120.0°
C2N2H12109.5°120.0°
C2N3C4116.1°122.4°
N7C5C4110.6°107.4°
C5N7C8105.2°109.4°
C5C4N3126.6°119.9°
C5C4N9105.6°106.0°
N7C8N9112.9°109.7°
N7C8H8123.6°125.2°
N3C4N9127.8°134.2°
C4N9C8105.7°107.4°
C4N9C16129.4°126.3°
C8N9C16124.8°126.3°
N9C8H8123.6°125.1°
N9C16C2'112.7°110.6°
N9C16O4'106.6°110.7°
N9C16H24111.0°110.6°
C2'C16O4'105.5°103.5°
C16C2'O2'113.7°110.9°
C16C2'C3'101.5°102.1°
C16C2'H6108.7°110.9°
C2'C16H24109.6°110.6°
C16O4'C4'106.4°107.0°
O4'C16H24111.4°110.6°
O2'C2'C3'113.4°110.9°
O2'C2'H6110.3°110.8°
C2'O2'H7109.5°114.0°
C2'C3'C4'103.3°104.2°
C2'C3'O3'116.4°110.5°
C2'C3'H4108.8°110.6°
C3'C2'H6108.8°110.9°
O4'C4'C3'108.6°107.4°
O4'C4'C5'107.5°109.9°
O4'C4'H3108.9°109.8°
C4'C3'O3'109.0°110.5°
C3'C4'C5'116.0°109.9°
C3'C4'H3107.6°109.9°
C4'C3'H4108.7°110.5°
O3'C3'H4110.2°110.4°
C3'O3'H5109.5°114.0°
C4'C5'O5'107.4°109.5°
C4'C5'H1110.0°109.5°
C4'C5'H2110.0°109.4°
C5'C4'H3108.1°109.9°
C5'O5'S1117.0°114.0°
O5'C5'H1110.0°109.5°
O5'C5'H2110.0°109.4°
O24C7N4122.4°119.9°
O24C7C11122.1°120.0°
O5'S1N493.7°107.2°
O5'S1O3111.5°106.4°
O5'S1O2112.5°106.4°
C7N4S1130.3°120.1°
N4C7C11115.5°120.1°
C7N4H13114.8°120.0°
N4S1O393.4°106.4°
N4S1O2116.9°106.4°
S1N4H13114.8°120.0°
O3S1O2123.6°123.1°
C7C11C12108.1°109.5°
C7C11H14109.8°109.5°
C7C11H15109.8°109.5°
N16C17C13110.2°109.9°
C17N16C15109.3°109.9°
C17N16H18125.3°125.1°
N16C17H19124.9°125.0°
C17C13C12128.8°126.4°
C17C13C14106.0°107.0°
C13C17H19124.9°125.1°
N16C15C14107.2°107.2°
N16C15C28130.7°133.5°
C15N16H18125.4°125.1°
C11C12C13117.4°109.5°
C12C11H14109.8°109.5°
C12C11H15109.8°109.5°
C11C12H16107.4°109.5°
C11C12H17107.4°109.5°
C12C13C14124.7°126.5°
C13C12H16107.5°109.4°
C13C12H17107.5°109.5°
C13C14C15107.2°106.0°
C13C14C25134.0°134.0°
C14C15C28122.1°119.3°
C15C14C25118.8°119.9°
C15C28C27117.3°119.8°
C15C28H23121.3°120.1°
C14C25C26118.9°119.8°
C14C25H20120.6°120.1°
C28C27C26121.6°120.6°
C28C27H22119.2°119.7°
C27C28H23121.4°120.1°
C25C26C27121.3°120.6°
C26C25H20120.5°120.1°
C25C26H21119.3°119.7°
C27C26H21119.3°119.8°
C26C27H22119.2°119.7°
H1C5'H2109.5°109.5°
H11N2H12109.4°120.0°
H14C11H15109.5°109.4°
H16C12H17109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C10C9N6H9180.0°180.0°
C9C10N1H10180.0°180.0°
C10C9N6C61.3°0.0°
C9C10N1C60.6°0.0°
C9C10N1C2180.0°179.9°
N6C9C10N11.2°0.1°
C9N6C6N10.9°0.0°
C9N6C6C5178.4°179.9°
N6C9C10H10178.8°179.9°
C10N1C6N60.2°0.0°
C10N1C6C2179.5°179.9°
C10N1C6C5179.2°180.0°
C10N1C2N21.0°0.2°
C10N1C2N3178.9°180.0°
N1C10C9H9178.8°180.0°
N6C6N1C5179.4°180.0°
N6C6N1C2179.3°179.9°
N6C6C5N70.2°0.0°
N6C6C5C4179.7°180.0°
C6N6C9H9178.7°180.0°
C6N1C2N2178.3°179.7°
C6N1C2N31.8°0.1°
N1C6C5N7179.1°179.9°
N1C6C5C41.0°0.1°
C6N1C10H10179.4°179.9°
C2N1C6C51.3°0.1°
N1C2N2N3179.9°179.8°
N1C2N3C41.8°0.0°
C2N1C10H100.0°0.0°
N1C2N2H11179.9°179.7°
N1C2N2H1260.1°0.2°
C6C5N7C4180.0°180.0°
C6C5N7C8178.7°180.0°
C6C5C4N31.3°0.0°
C6C5C4N9179.3°180.0°
N2C2N3C4178.3°179.7°
C2N2H11H12120.0°180.0°
C2N3C4C51.7°0.0°
C2N3C4N9179.1°180.0°
N3C2N2H110.0°0.0°
N3C2N2H12120.0°180.0°
N7C5C4N3178.8°180.0°
N7C5C4N90.6°0.0°
C5N7C8N91.5°0.0°
C5N7C8H8178.5°180.0°
C4C5N7C81.3°0.0°
C5C4N3N9179.3°180.0°
C5C4N9C80.3°0.0°
C5C4N9C16176.3°180.0°
N7C8N9C41.1°0.0°
N7C8N9H8180.0°180.0°
N7C8N9C16175.7°180.0°
N3C4N9C8179.6°180.0°
N3C4N9C163.1°0.0°
C4N9C8C16176.8°180.0°
C4N9C16C2'125.4°85.0°
C4N9C16O4'119.4°160.9°
C4N9C8H8178.8°180.0°
C4N9C16H242.1°37.9°
C8N9C16C2'50.6°95.0°
C8N9C16O4'64.6°19.1°
C8N9C16H24173.9°142.1°
N9C16C2'O4'116.0°118.6°
N9C16C2'H24124.1°122.9°
N9C16O4'H24121.2°123.0°
N9C16C2'O2'83.9°86.3°
N9C16C2'C3'154.0°155.5°
N9C16O4'C4'156.9°158.4°
N9C16C2'H639.4°37.4°
C16N9C8H84.4°0.0°
C2'C16O4'H24118.8°118.5°
C16C2'O2'C3'115.3°112.7°
C16C2'O2'H6122.4°123.7°
C16C2'C3'H6114.5°118.2°
C2'C16O4'C4'36.9°39.9°
C16C2'C3'C4'24.1°20.9°
C16C2'C3'O3'95.3°97.8°
C16C2'C3'H4139.4°139.6°
C16C2'O2'H7180.0°174.2°
O4'C16C2'O2'160.2°155.1°
O4'C16C2'C3'38.1°36.9°
C16O4'C4'C3'20.8°26.3°
C16O4'C4'C5'146.9°145.9°
C16O4'C4'H396.1°93.1°
O4'C16C2'H676.5°81.2°
O2'C2'C3'H6123.1°123.6°
O2'C2'C3'C4'146.5°139.1°
O2'C2'C3'O3'27.1°20.4°
O2'C2'C3'H498.2°102.2°
O2'C2'C16H2440.2°36.6°
C2'C3'C4'O4'3.6°1.9°
C2'C3'C4'O3'124.4°118.7°
C2'C3'C4'H4115.5°118.8°
C2'C3'O3'H4124.6°122.7°
C2'C3'C4'C5'117.5°121.4°
C2'C3'C4'H3121.4°117.6°
C2'C3'O3'H5180.0°65.2°
C3'C2'O2'H764.7°61.5°
C3'C2'C16H2481.9°81.6°
O4'C4'C3'C5'121.1°119.6°
O4'C4'C3'H3117.8°119.4°
O4'C4'C3'O3'120.8°120.6°
O4'C4'C5'H3117.5°121.0°
O4'C4'C5'O5'156.6°66.7°
O4'C4'C5'H183.7°53.3°
O4'C4'C5'H236.9°173.3°
O4'C4'C3'H4119.1°116.9°
C4'O4'C16H2481.9°78.6°
C4'C3'O3'H4119.2°122.5°
C3'C4'C5'H3120.9°121.0°
C3'C4'C5'O5'81.7°175.3°
C3'C4'C5'H137.9°64.7°
C3'C4'C5'H2158.6°55.3°
C4'C3'O3'H563.8°180.0°
C4'C3'C2'H690.4°97.3°
O3'C3'C4'C5'118.1°119.8°
O3'C3'C4'H33.0°1.2°
O3'C3'C2'H6150.2°144.0°
C4'C5'O5'H1119.7°120.0°
C4'C5'O5'H2119.7°120.0°
C4'C5'O5'S1158.0°180.0°
C4'C5'H1H2121.0°120.0°
C5'C4'C3'H42.0°2.7°
C5'O5'S1N458.1°75.0°
C5'O5'S1O336.9°171.5°
C5'O5'S1O2179.3°38.6°
O5'C5'H1H2121.0°120.0°
O5'C5'C4'H339.1°54.3°
O24C7N4C11178.7°180.0°
O24C7N4S1162.8°0.1°
O24C7C11C1213.4°0.0°
O24C7N4H1317.2°180.0°
O24C7C11H14106.4°120.0°
O24C7C11H15133.1°120.0°
O5'S1N4C794.7°64.9°
O5'S1N4O3111.9°113.5°
O5'S1N4O2117.5°113.6°
O5'S1O3O2139.0°122.9°
S1O5'C5'H138.4°60.0°
S1O5'C5'H282.3°60.0°
O5'S1N4H1385.3°115.0°
C7N4S1H13180.0°179.9°
C7N4S1O3153.5°48.6°
C7N4S1O222.9°178.5°
N4C7C11C12165.4°180.0°
N4C7C11H1474.9°59.9°
N4C7C11H1545.6°60.0°
N4S1O3O2125.7°123.0°
S1N4C7C1115.9°180.0°
O3S1N4H1326.5°131.5°
C7C11C12H14119.8°120.1°
C7C11C12H15119.8°120.0°
C7C11C12C1373.3°180.0°
C11C7N4H13164.0°0.1°
C7C11H14H15120.6°120.0°
C7C11C12H16165.6°60.0°
C7C11C12H1747.9°60.0°
O2S1N4H13157.1°1.4°
N16C17C13H19180.0°179.7°
C17N16C15H18180.0°179.8°
N16C17C13C12174.5°179.9°
N16C17C13C142.2°0.3°
C17N16C15C140.1°0.2°
C17N16C15C28179.8°179.8°
C13C17N16C151.4°0.3°
C17C13C12C1196.7°95.3°
C17C13C12C14171.0°179.7°
C17C13C14C152.2°0.2°
C17C13C14C25178.2°179.9°
C17C13C12H16142.1°144.7°
C17C13C12H1724.4°24.7°
C13C17N16H18178.7°179.8°
N16C15C14C131.4°0.0°
N16C15C14C28179.7°180.0°
N16C15C14C25178.9°180.0°
N16C15C28C27178.7°180.0°
C15N16C17H19178.7°180.0°
N16C15C28H231.3°0.0°
C11C12C13H16121.1°120.0°
C11C12C13H17121.1°120.0°
C11C12C13C1492.3°85.0°
C12C11H14H15120.6°119.9°
C11C12H16H17116.4°120.0°
C12C13C14C15174.9°180.0°
C12C13C14C255.5°0.1°
C13C12C11H1446.5°60.0°
C13C12C11H15167.0°59.9°
C13C12H16H17116.4°120.0°
C12C13C17H195.6°0.2°
C13C14C15C25179.7°179.9°
C13C14C15C28178.9°180.0°
C13C14C25C26179.6°180.0°
C14C13C12H1628.8°35.0°
C14C13C12H17146.6°155.0°
C14C13C17H19177.8°180.0°
C13C14C25H200.4°0.1°
C14C15C28C270.9°0.0°
C15C14C25C260.0°0.1°
C14C15N16H18179.9°180.0°
C15C14C25H20180.0°180.0°
C14C15C28H23179.1°180.0°
C28C15C14C250.8°0.1°
C15C28C27H23180.0°180.0°
C15C28C27C260.2°0.0°
C28C15N16H180.2°0.0°
C15C28C27H22179.8°180.0°
C14C25C26H20180.0°179.9°
C14C25C26C270.6°0.1°
C14C25C26H21179.4°180.0°
C28C27C26C250.5°0.1°
C28C27C26H22180.0°180.0°
C28C27C26H21179.4°179.9°
C25C26C27H21180.0°179.9°
C25C26C27H22179.5°179.9°
C27C26C25H20179.4°180.0°
C26C27C28H23179.8°180.0°
H1C5'C4'H3158.8°174.3°
H2C5'C4'H380.5°65.7°
H3C4'C3'H4123.1°123.7°
H4C3'O3'H555.4°57.5°
H4C3'C2'H625.0°21.4°
H6C2'O2'H757.6°62.1°
H6C2'C16H24163.5°160.2°
H9C9C10H101.1°0.0°
H14C11C12H1674.6°180.0°
H14C11C12H17167.7°60.1°
H15C11C12H1645.8°60.1°
H15C11C12H1771.9°180.0°
H18N16C17H191.3°0.1°
H20C25C26H210.6°0.1°
H21C26C27H220.6°0.0°
H22C27C28H230.2°0.0°

222415

PDB entries from 2024-07-10

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