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XKB

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C9C10doub1.35Å1.36ÅAromatic
C9N6sing1.34Å1.38ÅAromatic
C10N1sing1.37Å1.39ÅAromatic
N6C6doub1.32Å1.35ÅAromatic
N1C6sing1.38Å1.39ÅAromatic
N1C2sing1.37Å1.39ÅAromatic
C6C5sing1.46Å1.38ÅAromatic
N2C2sing1.38Å1.32Å
C2N3doub1.31Å1.33ÅAromatic
C5N7sing1.35Å1.40ÅAromatic
C5C4doub1.40Å1.39ÅAromatic
N7C8doub1.30Å1.32ÅAromatic
N3C4sing1.34Å1.34ÅAromatic
C4N9sing1.37Å1.33ÅAromatic
C8N9sing1.36Å1.39ÅAromatic
N9C1'sing1.46Å1.46Å
C1'C2'sing1.55Å1.55Å
C1'O4'sing1.44Å1.41Å
O2'C2'sing1.43Å1.41Å
C2'C3'sing1.55Å1.53Å
O4'C4'sing1.44Å1.43Å
C3'C4'sing1.54Å1.54Å
C3'O3'sing1.43Å1.44Å
C4'C5'sing1.53Å1.49Å
C5'O5'sing1.45Å1.44Å
O5'C11sing1.35Å1.35Å
O11C11doub1.21Å1.23Å
C11N12sing1.35Å1.33Å
C15N15sing1.37Å1.37ÅAromatic
C15C14doub1.34Å1.36ÅAromatic
C13C14sing1.51Å1.49Å
C13C12sing1.53Å1.48Å
N15C16sing1.38Å1.37ÅAromatic
C14C21sing1.46Å1.45ÅAromatic
N12C12sing1.47Å1.49Å
C16C21doub1.41Å1.41ÅAromatic
C16C17sing1.39Å1.40ÅAromatic
C21C20sing1.40Å1.40ÅAromatic
C17C18doub1.38Å1.38ÅAromatic
C20C19doub1.37Å1.38ÅAromatic
C18C19sing1.39Å1.40ÅAromatic
N12H1sing0.97Å1.00Å
C5'H2sing1.09Å1.10Å
C5'H3sing1.09Å1.10Å
C4'H4sing1.09Å1.10Å
C3'H5sing1.09Å1.10Å
O3'H6sing0.97Å0.95Å
C2'H7sing1.09Å1.10Å
O2'H8sing0.97Å0.95Å
C1'H9sing1.09Å1.10Å
C8H10sing1.08Å1.08Å
C9H11sing1.08Å1.08Å
C10H12sing1.08Å1.08Å
C12H13sing1.09Å1.10Å
C12H14sing1.09Å1.10Å
C13H15sing1.09Å1.10Å
C13H16sing1.09Å1.10Å
C15H17sing1.08Å1.08Å
N15H18sing0.97Å1.00Å
C20H19sing1.08Å1.08Å
C19H20sing1.08Å1.08Å
C18H21sing1.08Å1.08Å
C17H22sing1.08Å1.08Å
N2H23sing0.97Å1.00Å
N2H24sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C10C9N6112.4°108.7°
C9C10N1105.9°107.1°
C10C9H11123.8°125.6°
C9C10H12127.1°126.5°
C9N6C6103.8°109.2°
N6C9H11123.8°125.7°
C10N1C6105.9°106.8°
C10N1C2130.3°133.4°
N1C10H12127.0°126.4°
N6C6N1111.9°108.2°
N6C6C5132.0°134.0°
C6N1C2123.7°119.8°
N1C6C5116.1°117.8°
N1C2N2118.2°118.9°
N1C2N3119.6°122.3°
C6C5N7131.9°134.6°
C6C5C4117.1°117.9°
N2C2N3122.1°118.8°
C2N2H23109.5°120.0°
C2N2H24109.4°120.0°
C2N3C4116.8°122.3°
N7C5C4111.0°107.4°
C5N7C8103.2°109.4°
C5C4N3126.5°119.9°
C5C4N9105.8°106.0°
N7C8N9112.4°109.7°
N7C8H10123.8°125.1°
N3C4N9127.7°134.1°
C4N9C8107.7°107.4°
C4N9C1'128.2°126.3°
C8N9C1'123.9°126.3°
N9C8H10123.8°125.1°
N9C1'C2'113.8°110.6°
N9C1'O4'108.3°110.7°
N9C1'H9110.3°110.7°
C2'C1'O4'104.3°103.4°
C1'C2'O2'114.8°110.9°
C1'C2'C3'102.5°102.1°
C1'C2'H7108.3°110.9°
C2'C1'H9109.1°110.6°
C1'O4'C4'106.6°107.0°
O4'C1'H9111.0°110.5°
O2'C2'C3'112.3°110.9°
O2'C2'H7110.1°110.8°
C2'O2'H8109.5°114.0°
C2'C3'C4'102.5°104.2°
C2'C3'O3'116.4°110.5°
C2'C3'H5109.0°110.5°
C3'C2'H7108.5°111.0°
O4'C4'C3'108.8°107.4°
O4'C4'C5'108.0°109.9°
O4'C4'H4108.8°109.9°
C4'C3'O3'109.3°110.5°
C3'C4'C5'115.5°109.9°
C3'C4'H4107.4°109.9°
C4'C3'H5108.9°110.5°
O3'C3'H5110.3°110.5°
C3'O3'H6109.5°114.0°
C4'C5'O5'106.9°109.5°
C4'C5'H2110.1°109.5°
C4'C5'H3110.1°109.4°
C5'C4'H4108.1°109.9°
C5'O5'C11115.5°117.0°
O5'C5'H2110.1°109.5°
O5'C5'H3110.1°109.5°
O5'C11O11124.7°120.0°
O5'C11N12110.1°120.0°
O11C11N12125.1°120.0°
C11N12C12125.1°120.0°
C11N12H1117.5°120.0°
N15C15C14110.5°109.9°
C15N15C16109.4°109.9°
N15C15H17124.8°125.0°
C15N15H18125.4°125.1°
C15C14C13125.8°126.5°
C15C14C21106.2°107.0°
C14C15H17124.8°125.1°
C14C13C12115.8°109.4°
C13C14C21128.0°126.5°
C14C13H15107.8°109.5°
C14C13H16107.9°109.5°
C13C12N12114.9°109.4°
C13C12H13108.1°109.5°
C13C12H14108.1°109.5°
C12C13H15107.9°109.5°
C12C13H16107.8°109.5°
N15C16C21107.2°107.1°
N15C16C17130.4°133.5°
C16N15H18125.3°125.0°
C14C21C16106.7°106.0°
C14C21C20135.2°134.0°
C12N12H1117.5°120.1°
N12C12H13108.1°109.5°
N12C12H14108.1°109.4°
C21C16C17122.4°119.4°
C16C21C20118.0°119.9°
C16C17C18117.7°119.7°
C16C17H22121.1°120.2°
C21C20C19120.0°119.8°
C21C20H19120.0°120.1°
C17C18C19121.6°120.7°
C17C18H21119.2°119.7°
C18C17H22121.2°120.1°
C20C19C18120.3°120.5°
C19C20H19120.0°120.2°
C20C19H20119.9°119.7°
C18C19H20119.8°119.8°
C19C18H21119.2°119.6°
H2C5'H3109.4°109.5°
H13C12H14109.4°109.5°
H15C13H16109.5°109.5°
H23N2H24109.5°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C10C9N6H11180.0°179.8°
C9C10N1H12180.0°179.9°
C10C9N6C63.0°0.2°
C9C10N1C62.7°0.0°
C9C10N1C2178.7°179.9°
N6C9C10N13.6°0.1°
C9N6C6N11.2°0.2°
C9N6C6C5179.0°179.9°
N6C9C10H12176.4°180.0°
C10N1C6N60.9°0.1°
C10N1C6C2176.4°179.9°
C10N1C6C5178.9°180.0°
C10N1C2N23.8°0.2°
C10N1C2N3179.9°180.0°
N1C10C9H11176.4°179.9°
N6C6N1C5179.9°179.9°
N6C6N1C2177.3°180.0°
N6C6C5N71.2°0.1°
N6C6C5C4179.8°179.9°
C6N6C9H11177.0°180.0°
C6N1C2N2179.2°179.7°
C6N1C2N34.5°0.0°
N1C6C5N7178.9°179.9°
N1C6C5C40.1°0.0°
C6N1C10H12177.3°179.9°
C2N1C6C52.6°0.1°
N1C2N2N3176.2°179.8°
N1C2N3C43.5°0.0°
C2N1C10H121.3°0.0°
N1C2N2H23176.2°179.7°
N1C2N2H2463.8°0.2°
C6C5N7C4179.1°180.0°
C6C5N7C8179.8°180.0°
C6C5C4N30.6°0.0°
C6C5C4N9179.2°180.0°
N2C2N3C4179.7°179.8°
C2N2H23H24120.0°180.0°
C2N3C4C51.2°0.1°
C2N3C4N9177.1°180.0°
N3C2N2H230.0°0.0°
N3C2N2H24120.0°180.0°
N7C5C4N3179.8°180.0°
N7C5C4N91.6°0.0°
C5N7C8N90.2°0.0°
C5N7C8H10179.8°180.0°
C4C5N7C81.1°0.0°
C5C4N3N9178.3°180.0°
C5C4N9C81.4°0.0°
C5C4N9C1'175.7°180.0°
N7C8N9C40.8°0.0°
N7C8N9H10180.0°180.0°
N7C8N9C1'175.4°180.0°
N3C4N9C8179.9°180.0°
N3C4N9C1'5.8°0.1°
C4N9C8C1'174.6°180.0°
C4N9C1'C2'121.2°85.0°
C4N9C1'O4'123.3°160.9°
C4N9C1'H91.7°38.0°
C4N9C8H10179.3°180.0°
C8N9C1'C2'52.3°94.9°
C8N9C1'O4'63.2°19.1°
C8N9C1'H9175.2°142.0°
N9C1'C2'O4'117.8°118.6°
N9C1'C2'H9123.6°123.1°
N9C1'O4'H9121.2°123.0°
N9C1'C2'O2'82.7°86.3°
N9C1'C2'C3'155.3°155.5°
N9C1'O4'C4'159.8°158.5°
N9C1'C2'H740.8°37.3°
C1'N9C8H104.6°0.0°
C2'C1'O4'H9117.3°118.5°
C1'C2'O2'C3'116.6°112.7°
C1'C2'O2'H7122.5°123.6°
C1'C2'C3'H7114.4°118.2°
C2'C1'O4'C4'38.3°39.9°
C1'C2'C3'C4'22.0°20.9°
C1'C2'C3'O3'97.2°97.8°
C1'C2'C3'H5137.3°139.6°
C1'C2'O2'H8180.0°174.2°
O4'C1'C2'O2'159.6°155.1°
O4'C1'C2'C3'37.6°37.0°
C1'O4'C4'C3'24.0°26.4°
C1'O4'C4'C5'150.2°145.9°
C1'O4'C4'H492.7°93.1°
O4'C1'C2'H776.9°81.3°
O2'C2'C3'H7121.9°123.6°
O2'C2'C3'C4'145.7°139.1°
O2'C2'C3'O3'26.5°20.4°
O2'C2'C3'H599.0°102.2°
O2'C2'C1'H941.0°36.8°
C2'C3'C4'O4'0.4°2.0°
C2'C3'C4'O3'124.1°118.7°
C2'C3'C4'H5115.3°118.7°
C2'C3'O3'H5124.8°122.6°
C2'C3'C4'C5'121.3°121.4°
C2'C3'C4'H4118.1°117.6°
C2'C3'O3'H6180.0°65.2°
C3'C2'O2'H863.4°61.5°
C3'C2'C1'H981.0°81.4°
O4'C4'C3'C5'121.7°119.5°
O4'C4'C3'H4117.7°119.5°
O4'C4'C3'O3'123.7°120.6°
O4'C4'C5'H4117.6°121.0°
O4'C4'C5'O5'177.0°66.7°
O4'C4'C5'H257.4°53.3°
O4'C4'C5'H363.4°173.3°
O4'C4'C3'H5115.8°116.8°
C4'O4'C1'H979.0°78.5°
C4'C3'O3'H5119.7°122.6°
C3'C4'C5'H4120.3°121.0°
C3'C4'C5'O5'54.9°175.3°
C3'C4'C5'H264.7°64.7°
C3'C4'C5'H3174.6°55.3°
C4'C3'O3'H664.5°180.0°
C4'C3'C2'H792.3°97.3°
O3'C3'C4'C5'114.6°119.9°
O3'C3'C4'H46.0°1.1°
O3'C3'C2'H7148.5°144.0°
C4'C5'O5'H2119.6°120.0°
C4'C5'O5'H3119.6°120.0°
C4'C5'O5'C11174.1°180.0°
C4'C5'H2H3121.2°120.0°
C5'C4'C3'H55.9°2.7°
C5'O5'C11O117.7°0.0°
C5'O5'C11N12169.7°180.0°
O5'C5'H2H3121.2°120.0°
O5'C5'C4'H465.4°54.3°
O5'C11O11N12177.0°180.0°
O5'C11N12C127.7°180.0°
O5'C11N12H1172.3°0.0°
C11O5'C5'H254.5°60.0°
C11O5'C5'H366.3°60.0°
O11C11N12C12169.7°0.1°
O11C11N12H110.3°180.0°
C11N12C12C1388.4°180.0°
C11N12C12H1180.0°179.9°
C11N12C12H1332.4°60.0°
C11N12C12H14150.8°60.0°
N15C15C14H17180.0°180.0°
N15C15C14C13179.5°180.0°
C15N15C16H18180.0°180.0°
N15C15C14C211.1°0.3°
C15N15C16C211.3°0.3°
C15N15C16C17179.1°180.0°
C15C14C13C21179.3°179.7°
C15C14C13C1299.7°94.7°
C14C15N15C161.6°0.0°
C15C14C21C160.3°0.4°
C15C14C21C20178.1°179.7°
C15C14C13H1521.2°145.3°
C15C14C13H16139.4°25.3°
C14C15N15H18178.4°180.0°
C14C13C12H15120.9°120.0°
C14C13C12H16120.9°120.0°
C14C13C12N1248.2°180.0°
C13C14C21C16179.7°179.8°
C13C14C21C202.5°0.0°
C14C13C12H13169.0°60.0°
C14C13C12H1472.6°60.0°
C14C13H15H16117.1°120.0°
C13C14C15H170.6°0.0°
C12C13C14C2181.0°85.0°
C13C12N12H13120.8°120.0°
C13C12N12H14120.8°120.0°
C13C12N12H191.6°0.0°
C13C12H13H14117.5°120.1°
C12C13H15H16117.1°120.0°
N15C16C21C140.6°0.4°
N15C16C21C17179.7°179.8°
N15C16C21C20177.7°179.7°
N15C16C17C18180.0°179.2°
C16N15C15H17178.4°180.0°
N15C16C17H220.1°0.0°
C14C21C16C20178.3°179.9°
C14C21C16C17179.7°179.8°
C14C21C20C19179.8°180.0°
C21C14C13H15158.1°34.9°
C21C14C13H1639.9°155.0°
C21C14C15H17178.8°179.8°
C14C21C20H190.2°0.0°
N12C12H13H14117.5°119.9°
N12C12C13H1572.7°60.0°
N12C12C13H16169.1°60.1°
C21C16C17C180.4°0.5°
C16C21C20C192.6°0.2°
C21C16N15H18178.7°179.7°
C16C21C20H19177.4°179.9°
C21C16C17H22179.7°179.7°
C17C16C21C202.0°0.0°
C16C17C18H22180.0°179.2°
C16C17C18C192.2°0.7°
C17C16N15H180.9°0.0°
C16C17C18H21177.8°179.8°
C21C20C19H19180.0°179.9°
C21C20C19C180.9°0.0°
C21C20C19H20179.1°179.9°
C17C18C19C201.6°0.5°
C17C18C19H21180.0°179.5°
C17C18C19H20178.4°179.6°
C20C19C18H20180.0°179.9°
C20C19C18H21178.4°180.0°
C18C19C20H19179.1°179.9°
C19C18C17H22177.8°179.9°
H1N12C12H13147.6°120.0°
H1N12C12H1429.2°120.0°
H2C5'C4'H4175.0°174.2°
H3C5'C4'H454.2°65.7°
H4C4'C3'H5126.6°123.7°
H5C3'O3'H655.2°57.5°
H5C3'C2'H723.0°21.4°
H7C2'O2'H857.6°62.2°
H7C2'C1'H9164.5°160.3°
H11C9C10H123.6°0.1°
H13C12C13H1548.1°180.0°
H13C12C13H1670.1°59.9°
H14C12C13H15166.5°59.9°
H14C12C13H1648.3°180.0°
H17C15N15H181.6°0.0°
H19C20C19H200.9°0.0°
H20C19C18H211.6°0.1°
H21C18C17H222.2°0.6°

248636

PDB entries from 2026-02-04

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