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SummaryGeometryRelated PDB entries

XJM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C02C01sing1.51Å1.53Å
N03C02doub1.31Å1.32ÅAromatic
N04N03sing1.29Å1.37ÅAromatic
N05N04doub1.29Å1.35ÅAromatic
N06N05sing1.29Å1.37ÅAromatic
C02N06sing1.35Å1.32ÅAromatic
C01H012sing1.09Å1.10Å
C01H013sing1.09Å1.10Å
C01H011sing1.09Å1.10Å
N06H061sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C01C02N03126.0°126.6°
C01C02N06126.0°126.7°
C02C01H012109.5°109.4°
C02C01H013109.5°109.5°
C02C01H011109.5°109.5°
C02N03N04108.6°108.0°
N03C02N06108.0°106.7°
N03N04N05107.9°109.3°
N04N05N06105.3°108.9°
N05N06C02110.2°107.1°
N05N06H061125.0°126.5°
C02N06H061124.9°126.4°
H012C01H013109.5°109.5°
H012C01H011109.5°109.5°
H013C01H011109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C01C02N03N06179.6°179.8°
C01C02N03N04179.9°180.0°
C01C02N06N05180.0°179.9°
C02C01H012H013120.0°120.0°
C02C01H012H011120.0°119.9°
C02C01H013H011120.0°120.0°
C01C02N06H0610.0°0.0°
C02N03N04N050.4°0.0°
N03C02N06N050.5°0.4°
N03C02C01H0120.0°89.7°
N03C02C01H013120.0°30.3°
N03C02C01H011120.0°150.3°
N03C02N06H061179.5°179.7°
N03N04N05N060.1°0.2°
N04N03C02N060.5°0.2°
N04N05N06C020.2°0.3°
N04N05N06H061179.8°179.8°
N05N06C02H061180.0°179.9°
N06C02C01H012179.5°90.0°
N06C02C01H01359.5°150.0°
N06C02C01H01160.5°30.0°
H012C01H013H011120.0°120.0°

247536

PDB entries from 2026-01-14

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