Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

XIM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2sing1.51Å1.57Å
C1N1sing1.35Å1.39ÅAromatic
C1N21doub1.30Å1.34ÅAromatic
C2C3sing1.53Å1.55Å
C2O2sing1.43Å1.41Å
C2H2sing1.09Å1.10Å
C3C4sing1.53Å1.54Å
C3O3sing1.43Å1.41Å
C3H3sing1.09Å1.10Å
C4C5sing1.53Å1.54Å
C4O4sing1.43Å1.41Å
C4H4sing1.09Å1.10Å
C5N1sing1.47Å1.43Å
C5H51sing1.09Å1.10Å
C5H52sing1.09Å1.10Å
N1C17sing1.36Å1.37ÅAromatic
C17C18doub1.35Å1.35ÅAromatic
C17H17sing1.08Å1.08Å
C18N21sing1.34Å1.34ÅAromatic
C18H18sing1.08Å1.08Å
O2HO2sing0.97Å0.95Å
O3HO3sing0.97Å0.95Å
O4HO4sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1N1121.4°124.0°
C2C1N21126.1°127.4°
C1C2C3109.2°108.2°
C1C2O2115.6°109.7°
C1C2H2106.8°109.7°
N1C1N21112.5°108.6°
C1N1C5128.1°124.8°
C1N1C17102.0°107.4°
C1N21C18105.8°109.2°
C3C2O2109.0°109.7°
C3C2H2107.1°109.7°
C2C3C4111.5°109.2°
C2C3O3109.3°109.5°
C2C3H3108.2°109.5°
O2C2H2108.8°109.8°
C2O2HO2109.5°114.0°
C4C3O3109.6°109.5°
C4C3H3108.3°109.5°
C3C4C5111.7°109.5°
C3C4O4109.4°109.5°
C3C4H4108.8°109.5°
O3C3H3110.0°109.5°
C3O3HO3109.5°114.0°
C5C4O4107.6°109.4°
C5C4H4108.7°109.4°
C4C5N1105.7°108.8°
C4C5H51110.4°109.6°
C4C5H52110.4°109.6°
O4C4H4110.5°109.5°
C4O4HO4109.5°114.0°
N1C5H51110.4°109.6°
N1C5H52110.4°109.6°
C5N1C17129.9°127.7°
H51C5H52109.5°109.7°
N1C17C18110.5°106.6°
N1C17H17124.8°126.6°
C18C17H17124.7°126.7°
C17C18N21109.2°108.1°
C17C18H18125.4°125.9°
N21C18H18125.4°125.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1N1N21179.6°179.7°
C1C2C3O2127.1°119.7°
C1C2C3H2115.3°119.6°
C1C2O2H2120.1°120.6°
C1C2C3C437.1°48.8°
C1C2C3O3158.3°168.7°
C1C2C3H381.9°71.1°
C2C1N1C50.1°0.2°
C2C1N1C17179.6°179.9°
C2C1N21C18179.6°180.0°
C1C2O2HO2180.0°60.0°
N1C1C2C35.9°15.9°
N1C1C2O2129.2°135.6°
N1C1C2H2109.6°103.7°
C1N1C5C424.3°17.1°
C1N1C5C17179.4°179.9°
C1N1C5H5195.1°102.7°
C1N1C5H52143.7°136.9°
C1N1C17C180.0°0.0°
C1N1C17H17179.9°179.9°
N1C1N21C180.0°0.4°
N21C1C2C3174.5°163.7°
N21C1C2O251.2°44.0°
N21C1C2H270.0°76.7°
N21C1N1C5179.6°179.9°
N21C1N1C170.0°0.2°
C1N21C18C170.0°0.4°
C1N21C18H18180.0°179.8°
C3C2O2H2116.5°120.7°
C2C3C4O3121.1°119.9°
C2C3C4H3118.9°120.0°
C2C3O3H3118.6°120.1°
C2C3C4C566.3°69.5°
C2C3C4O4174.6°170.5°
C2C3C4H453.8°50.5°
C3C2O2HO256.6°178.8°
C2C3O3HO3180.0°60.0°
O2C2C3C4164.2°168.5°
O2C2C3O374.5°71.6°
O2C2C3H345.2°48.5°
H2C2C3C478.2°70.8°
H2C2C3O343.0°49.1°
H2C2C3H3162.8°169.2°
H2C2O2HO259.9°60.6°
C4C3O3H3119.0°120.1°
C3C4C5O4120.1°120.0°
C3C4C5H4120.1°120.1°
C3C4O4H4119.8°120.1°
C3C4C5N155.9°50.4°
C3C4C5H5163.5°69.4°
C3C4C5H52175.4°170.1°
C4C3O3HO357.6°179.7°
C3C4O4HO4180.0°180.0°
O3C3C4C5172.6°170.6°
O3C3C4O453.6°50.6°
O3C3C4H467.3°69.4°
H3C3C4C552.6°50.4°
H3C3C4O466.5°69.5°
H3C3C4H4172.7°170.4°
H3C3O3HO361.4°60.1°
C5C4O4H4118.6°119.9°
C4C5N1H51119.4°119.8°
C4C5N1H52119.4°119.8°
C4C5H51H52121.7°120.4°
C4C5N1C17155.1°162.8°
C5C4O4HO458.5°60.0°
O4C4C5N1176.0°170.4°
O4C4C5H5156.6°50.6°
O4C4C5H5264.6°69.8°
H4C4C5N164.2°69.7°
H4C4C5H51176.4°170.6°
H4C4C5H5255.2°50.1°
H4C4O4HO460.2°59.9°
N1C5H51H52121.8°120.3°
C5N1C17C18179.6°179.9°
C5N1C17H170.4°0.2°
H51C5N1C1785.5°77.4°
H52C5N1C1735.7°43.0°
N1C17C18H17180.0°179.9°
N1C17C18N210.0°0.2°
N1C17C18H18180.0°180.0°
C17C18N21H18180.0°179.8°
H17C17C18N21180.0°179.7°
H17C17C18H180.0°0.1°

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon