XIL

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C2	sing	1.53Å	1.53Å
C1	O5	sing	1.43Å	1.44Å
C1	O1	sing	1.43Å	1.45Å
C1	H1	sing	1.09Å	1.12Å
C2	O2	sing	1.43Å	1.42Å
C2	C3	sing	1.53Å	1.53Å
C2	H2	sing	1.09Å	1.11Å
O2	HO2	sing	0.97Å	0.95Å
C3	O3	sing	1.43Å	1.42Å
C3	C4	sing	1.53Å	1.53Å
C3	H3	sing	1.09Å	1.12Å
O3	HO3	sing	0.97Å	0.95Å
C4	O4	sing	1.43Å	1.42Å
C4	C5	sing	1.53Å	1.53Å
C4	H4	sing	1.09Å	1.11Å
O4	HO4	sing	0.97Å	0.95Å
C5	O5	sing	1.43Å	1.45Å
C5	H51	sing	1.09Å	1.12Å
C5	H52	sing	1.09Å	1.11Å
N1'	C2'	sing	1.33Å	1.42Å
N1'	C6'	sing	1.46Å	1.45Å
N1'	HN'	sing	0.97Å	1.02Å
C2'	C3'	sing	1.50Å	1.42Å
C2'	O2'	doub	1.21Å	1.22Å
C3'	O3'	sing	1.43Å	1.41Å
C3'	C4'	sing	1.53Å	1.57Å
C3'	H3'	sing	1.09Å	1.11Å
O3'	HO'	sing	0.97Å	0.95Å
C4'	O1	sing	1.43Å	1.42Å
C4'	C5'	sing	1.53Å	1.53Å
C4'	H4'	sing	1.09Å	1.12Å
C5'	C6'	sing	1.53Å	1.50Å
C5'	H5'1	sing	1.09Å	1.11Å
C5'	H5'2	sing	1.09Å	1.12Å
C6'	H6'1	sing	1.09Å	1.12Å
C6'	H6'2	sing	1.09Å	1.12Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	C1	O5	110.3°	109.8°
C2	C1	O1	109.3°	109.3°
C2	C1	H1	108.7°	109.4°
C1	C2	O2	109.2°	109.5°
C1	C2	C3	110.8°	109.1°
C1	C2	H2	108.8°	109.5°
O5	C1	O1	108.7°	109.4°
O5	C1	H1	109.4°	109.5°
C1	O5	C5	112.4°	107.6°
O1	C1	H1	110.4°	109.4°
C1	O1	C4'	110.7°	106.8°
O2	C2	C3	109.4°	109.7°
O2	C2	H2	110.2°	109.6°
C2	O2	HO2	109.2°	106.9°
C3	C2	H2	108.5°	109.4°
C2	C3	O3	109.8°	109.7°
C2	C3	C4	110.9°	108.6°
C2	C3	H3	108.3°	109.6°
O3	C3	C4	109.4°	109.9°
O3	C3	H3	109.8°	109.6°
C3	O3	HO3	109.8°	106.8°
C4	C3	H3	108.7°	109.5°
C3	C4	O4	109.3°	109.5°
C3	C4	C5	110.3°	109.1°
C3	C4	H4	109.1°	109.5°
O4	C4	C5	109.6°	109.6°
O4	C4	H4	109.8°	109.5°
C4	O4	HO4	109.3°	106.7°
C5	C4	H4	108.7°	109.6°
C4	C5	O5	110.1°	109.8°
C4	C5	H51	111.9°	109.4°
C4	C5	H52	112.0°	109.4°
O5	C5	H51	112.0°	109.4°
O5	C5	H52	112.0°	109.4°
H51	C5	H52	98.4°	109.3°
C2'	N1'	C6'	121.0°	124.1°
C2'	N1'	HN'	118.6°	117.9°
N1'	C2'	C3'	119.3°	123.5°
N1'	C2'	O2'	119.2°	118.3°
C6'	N1'	HN'	120.3°	118.0°
N1'	C6'	C5'	110.5°	110.5°
N1'	C6'	H6'1	111.9°	109.2°
N1'	C6'	H6'2	111.8°	109.3°
C3'	C2'	O2'	119.5°	118.2°
C2'	C3'	O3'	118.8°	109.4°
C2'	C3'	C4'	116.8°	109.9°
C2'	C3'	H3'	95.9°	109.3°
O3'	C3'	C4'	110.8°	109.4°
O3'	C3'	H3'	104.4°	109.4°
C3'	O3'	HO'	118.8°	106.8°
C4'	C3'	H3'	107.3°	109.4°
C3'	C4'	O1	108.4°	109.8°
C3'	C4'	C5'	109.7°	108.4°
C3'	C4'	H4'	111.1°	109.7°
O1	C4'	C5'	112.2°	109.6°
O1	C4'	H4'	108.4°	109.6°
C5'	C4'	H4'	107.1°	109.6°
C4'	C5'	C6'	106.9°	108.7°
C4'	C5'	H5'1	113.2°	109.6°
C4'	C5'	H5'2	113.2°	109.6°
C6'	C5'	H5'1	113.2°	109.6°
C6'	C5'	H5'2	113.1°	109.6°
C5'	C6'	H6'1	111.8°	109.4°
C5'	C6'	H6'2	111.8°	109.3°
H5'1	C5'	H5'2	97.3°	109.7°
H6'1	C6'	H6'2	98.6°	109.2°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	C1	O5	O1	119.9°	120.0°
C2	C1	O5	H1	119.5°	120.1°
C2	C1	O1	H1	119.6°	119.7°
C1	C2	O2	C3	121.4°	119.7°
C1	C2	O2	H2	119.4°	120.2°
C1	C2	C3	H2	119.3°	119.8°
C1	C2	O2	HO2	180.0°	60.0°
C1	C2	C3	O3	172.3°	173.6°
C1	C2	C3	C4	51.3°	53.5°
C1	C2	C3	H3	67.9°	66.0°
C2	C1	O5	C5	61.4°	67.5°
C2	C1	O1	C4'	173.5°	168.0°
O5	C1	O1	H1	119.9°	120.0°
O5	C1	C2	O2	175.6°	178.8°
O5	C1	C2	C3	55.1°	61.2°
O5	C1	C2	H2	64.1°	58.6°
C1	O5	C5	C4	62.2°	67.6°
C1	O5	C5	H51	63.1°	52.5°
C1	O5	C5	H52	172.5°	172.3°
O5	C1	O1	C4'	66.0°	71.7°
O1	C1	C2	O2	64.9°	58.7°
O1	C1	C2	C3	174.6°	178.8°
O1	C1	C2	H2	55.4°	61.5°
O1	C1	O5	C5	178.7°	172.5°
C1	O1	C4'	C3'	154.5°	151.2°
C1	O1	C4'	C5'	84.2°	89.8°
C1	O1	C4'	H4'	33.9°	30.6°
H1	C1	C2	O2	55.7°	61.1°
H1	C1	C2	C3	64.8°	58.9°
H1	C1	C2	H2	176.0°	178.7°
H1	C1	O5	C5	58.2°	52.5°
H1	C1	O1	C4'	53.9°	48.2°
O2	C2	C3	H2	120.2°	120.2°
O2	C2	C3	O3	67.3°	66.4°
O2	C2	C3	C4	171.7°	173.5°
O2	C2	C3	H3	52.6°	54.0°
C3	C2	O2	HO2	58.6°	179.7°
C2	C3	O3	C4	121.9°	119.3°
C2	C3	O3	H3	118.9°	120.3°
C2	C3	C4	H3	118.9°	119.6°
C2	C3	O3	HO3	180.0°	180.0°
C2	C3	C4	O4	172.5°	173.5°
C2	C3	C4	C5	51.9°	53.5°
C2	C3	C4	H4	67.5°	66.4°
H2	C2	O2	HO2	60.6°	60.2°
H2	C2	C3	O3	52.9°	53.8°
H2	C2	C3	C4	68.1°	66.3°
H2	C2	C3	H3	172.8°	174.2°
O3	C3	C4	H3	119.9°	120.4°
O3	C3	C4	O4	66.3°	66.6°
O3	C3	C4	C5	173.1°	173.5°
O3	C3	C4	H4	53.8°	53.6°
C4	C3	O3	HO3	58.1°	60.7°
C3	C4	O4	C5	121.0°	119.6°
C3	C4	O4	H4	119.6°	120.1°
C3	C4	C5	H4	119.6°	119.9°
C3	C4	O4	HO4	180.0°	179.8°
C3	C4	C5	O5	56.5°	61.2°
C3	C4	C5	H51	68.8°	58.9°
C3	C4	C5	H52	178.2°	178.6°
H3	C3	O3	HO3	61.0°	59.7°
H3	C3	C4	O4	53.6°	53.8°
H3	C3	C4	C5	67.0°	66.1°
H3	C3	C4	H4	173.6°	174.0°
O4	C4	C5	H4	120.0°	120.2°
O4	C4	C5	O5	176.8°	178.9°
O4	C4	C5	H51	51.6°	61.0°
O4	C4	C5	H52	57.8°	58.8°
C5	C4	O4	HO4	58.9°	60.1°
C4	C5	O5	H51	125.2°	120.1°
C4	C5	O5	H52	125.3°	120.2°
C4	C5	H51	H52	117.8°	119.8°
H4	C4	O4	HO4	60.4°	60.1°
H4	C4	C5	O5	63.1°	58.7°
H4	C4	C5	H51	171.6°	178.8°
H4	C4	C5	H52	62.2°	61.5°
O5	C5	H51	H52	117.9°	119.8°
C2'	N1'	C6'	HN'	180.0°	179.9°
N1'	C2'	C3'	O2'	163.7°	179.9°
N1'	C2'	C3'	O3'	154.8°	137.6°
N1'	C2'	C3'	C4'	17.7°	17.5°
N1'	C2'	C3'	H3'	95.1°	102.6°
C2'	N1'	C6'	C5'	42.2°	19.0°
C2'	N1'	C6'	H6'1	83.1°	139.3°
C2'	N1'	C6'	H6'2	167.4°	101.3°
C6'	N1'	C2'	C3'	19.5°	2.1°
C6'	N1'	C2'	O2'	176.8°	177.8°
N1'	C6'	C5'	C4'	61.5°	50.7°
N1'	C6'	C5'	H6'1	125.3°	120.3°
N1'	C6'	C5'	H6'2	125.3°	120.3°
N1'	C6'	C5'	H5'1	63.8°	69.0°
N1'	C6'	C5'	H5'2	173.2°	170.5°
N1'	C6'	H6'1	H6'2	117.7°	119.5°
HN'	N1'	C2'	C3'	160.5°	177.8°
HN'	N1'	C2'	O2'	3.2°	2.3°
HN'	N1'	C6'	C5'	137.8°	160.9°
HN'	N1'	C6'	H6'1	96.9°	40.5°
HN'	N1'	C6'	H6'2	12.5°	78.9°
C2'	C3'	O3'	C4'	139.5°	120.5°
C2'	C3'	O3'	H3'	105.3°	119.7°
C2'	C3'	C4'	H3'	106.2°	120.1°
C2'	C3'	O3'	HO'	179.9°	60.0°
C2'	C3'	C4'	O1	161.8°	168.5°
C2'	C3'	C4'	C5'	39.0°	48.8°
C2'	C3'	C4'	H4'	79.2°	70.9°
O2'	C2'	C3'	O3'	41.5°	42.2°
O2'	C2'	C3'	C4'	178.7°	162.4°
O2'	C2'	C3'	H3'	68.5°	77.5°
O3'	C3'	C4'	H3'	113.5°	119.8°
O3'	C3'	C4'	O1	57.9°	71.3°
O3'	C3'	C4'	C5'	179.3°	169.0°
O3'	C3'	C4'	H4'	61.1°	49.2°
C4'	C3'	O3'	HO'	40.5°	179.5°
C3'	C4'	O1	C5'	121.2°	119.0°
C3'	C4'	O1	H4'	120.7°	120.6°
C3'	C4'	C5'	H4'	120.6°	119.8°
C3'	C4'	C5'	C6'	59.8°	67.5°
C3'	C4'	C5'	H5'1	65.5°	52.2°
C3'	C4'	C5'	H5'2	174.9°	172.7°
H3'	C3'	O3'	HO'	74.8°	59.8°
H3'	C3'	C4'	O1	55.6°	48.5°
H3'	C3'	C4'	C5'	67.2°	71.2°
H3'	C3'	C4'	H4'	174.6°	169.0°
O1	C4'	C5'	H4'	118.9°	120.4°
O1	C4'	C5'	C6'	179.7°	172.7°
O1	C4'	C5'	H5'1	55.0°	67.6°
O1	C4'	C5'	H5'2	54.4°	52.9°
C4'	C5'	C6'	H5'1	125.3°	119.7°
C4'	C5'	C6'	H5'2	125.3°	119.8°
C4'	C5'	H5'1	H5'2	119.1°	120.4°
C4'	C5'	C6'	H6'1	63.8°	171.0°
C4'	C5'	C6'	H6'2	173.2°	69.6°
H4'	C4'	C5'	C6'	60.8°	52.3°
H4'	C4'	C5'	H5'1	173.9°	172.0°
H4'	C4'	C5'	H5'2	64.5°	67.5°
C6'	C5'	H5'1	H5'2	119.0°	120.4°
C5'	C6'	H6'1	H6'2	117.7°	119.5°
H5'1	C5'	C6'	H6'1	170.9°	51.2°
H5'1	C5'	C6'	H6'2	61.5°	170.7°
H5'2	C5'	C6'	H6'1	61.5°	69.2°
H5'2	C5'	C6'	H6'2	47.9°	50.2°

Definition date:	2002-10-28
Last modified:	2020-07-17
Release status:	REL
Processing site:	RCSB
Derived from:	1J01