Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

XDK

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C7AC3Asing1.38Å1.38ÅAromatic
C7AC9doub1.38Å1.38ÅAromatic
C3AN2Adoub1.32Å1.34ÅAromatic
N2AC1Asing1.32Å1.34ÅAromatic
C1AC5Adoub1.39Å1.39ÅAromatic
C5AC4sing1.48Å1.49ÅAromatic
C5AC9sing1.40Å1.39ÅAromatic
C4N3doub1.33Å1.34ÅAromatic
C4C5sing1.40Å1.38ÅAromatic
N3C2sing1.32Å1.35ÅAromatic
C5C6doub1.38Å1.38ÅAromatic
C6N1sing1.32Å1.33ÅAromatic
N1C2doub1.32Å1.35ÅAromatic
C2N7sing1.39Å1.37Å
C7AH7Asing1.08Å1.08Å
C3AH3Asing1.08Å1.08Å
C9H9sing1.08Å1.08Å
C1AH1Asing1.08Å1.08Å
C5H5sing1.08Å1.08Å
C6H6sing1.08Å1.08Å
N7H71Nsing0.97Å1.00Å
N7H72Nsing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C3AC7AC9119.4°119.3°
C7AC3AN2A122.4°121.0°
C3AC7AH7A120.3°120.3°
C7AC3AH3A118.8°119.5°
C7AC9C5A119.2°118.3°
C9C7AH7A120.3°120.3°
C7AC9H9120.4°120.9°
C3AN2AC1A117.9°121.9°
N2AC3AH3A118.8°119.5°
N2AC1AC5A123.5°120.6°
N2AC1AH1A118.3°119.7°
C1AC5AC4121.2°120.5°
C1AC5AC9117.6°118.9°
C5AC1AH1A118.3°119.7°
C4C5AC9121.2°120.5°
C5AC4N3116.6°120.5°
C5AC4C5122.3°120.5°
C5AC9H9120.4°120.8°
N3C4C5121.1°119.0°
C4N3C2116.8°120.6°
C4C5C6118.8°118.5°
C4C5H5120.6°120.7°
N3C2N1124.8°121.7°
N3C2N7117.4°119.1°
C5C6N1121.3°119.3°
C6C5H5120.6°120.8°
C5C6H6119.4°120.3°
C6N1C2117.2°121.0°
N1C6H6119.4°120.4°
N1C2N7117.8°119.1°
C2N7H71N109.5°120.0°
C2N7H72N109.5°120.0°
H71NN7H72N109.5°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C3AC7AC9H7A180.0°179.7°
C7AC3AN2AH3A180.0°179.9°
C7AC3AN2AC1A1.0°0.1°
C3AC7AC9C5A0.7°0.0°
C3AC7AC9H9179.4°180.0°
C9C7AC3AN2A1.1°0.0°
C7AC9C5AC1A0.2°0.0°
C7AC9C5AC4180.0°180.0°
C7AC9C5AH9180.0°180.0°
C9C7AC3AH3A178.9°180.0°
C3AN2AC1AC5A0.5°0.1°
N2AC3AC7AH7A178.9°179.7°
C3AN2AC1AH1A179.4°180.0°
N2AC1AC5AH1A180.0°179.9°
N2AC1AC5AC4179.9°180.0°
N2AC1AC5AC90.2°0.1°
C1AN2AC3AH3A179.0°180.0°
C1AC5AC4C9179.8°179.9°
C1AC5AC4N3133.8°175.0°
C1AC5AC4C545.6°4.8°
C1AC5AC9H9179.8°180.0°
C5AC4N3C5179.4°179.7°
C5AC4N3C2178.9°180.0°
C5AC4C5C6179.1°180.0°
C4C5AC9H90.0°0.1°
C4C5AC1AH1A0.1°0.1°
C5AC4C5H50.9°0.0°
C9C5AC4N345.9°5.0°
C9C5AC4C5134.7°175.3°
C5AC9C7AH7A179.3°179.7°
C9C5AC1AH1A179.8°180.0°
N3C4C5C60.3°0.2°
C4N3C2N10.8°0.0°
C4N3C2N7179.0°180.0°
N3C4C5H5179.7°179.7°
C5C4N3C20.6°0.3°
C4C5C6H5180.0°179.9°
C4C5C6N10.2°0.1°
C4C5C6H6179.9°180.0°
N3C2N1C60.8°0.3°
N3C2N1N7179.8°180.0°
N3C2N7H71N117.8°0.0°
N3C2N7H72N2.3°180.0°
C5C6N1H6180.0°180.0°
C5C6N1C20.4°0.3°
C6N1C2N7179.1°179.7°
N1C6C5H5179.8°180.0°
C2N1C6H6179.6°179.7°
N1C2N7H71N62.4°180.0°
N1C2N7H72N177.6°0.0°
C2N7H71NH72N120.0°180.0°
H7AC7AC3AH3A1.1°0.2°
H7AC7AC9H90.7°0.2°
H5C5C6H60.1°0.0°

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon