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SummaryGeometryRelated PDB entries

XCT

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
OP3Psing1.61Å1.58Å
OP3HOP3sing0.97Å0.95Å
POP1doub1.48Å1.47Å
POP2sing1.61Å1.48Å
PO6'sing1.61Å1.59Å
OP2HOP2sing0.97Å0.95Å
O6'C6'sing1.43Å1.38Å
C6'C5'sing1.53Å1.51Å
C6'H6'1sing1.09Å1.10Å
C6'H6'2sing1.09Å1.10Å
C5'O5'sing1.43Å1.44Å
C5'C4'sing1.53Å1.52Å
C5'H5'sing1.09Å1.10Å
O5'C1'sing1.43Å1.42Å
C4'O4'sing1.43Å1.42Å
C4'C3'sing1.53Å1.51Å
C4'H4'sing1.09Å1.10Å
O4'H4Tsing0.97Å0.95Å
C3'C2'sing1.53Å1.53Å
C3'H3'1sing1.09Å1.10Å
C3'H3'2sing1.09Å1.10Å
C2'C1'sing1.53Å1.53Å
C2'H2'1sing1.09Å1.10Å
C2'H2'2sing1.09Å1.10Å
C1'N1sing1.46Å1.46Å
C1'H1'sing1.09Å1.10Å
N1C2sing1.35Å1.39Å
N1C6sing1.36Å1.37Å
C2O2doub1.22Å1.26Å
C2N3sing1.33Å1.36Å
C6C5doub1.35Å1.32Å
C6H6sing1.08Å1.08Å
C5C4sing1.41Å1.41Å
C5H5sing1.08Å1.08Å
C4N3doub1.33Å1.35Å
C4N4sing1.37Å1.33Å
N4HN41sing0.97Å1.00Å
N4HN42sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
POP3HOP3109.5°106.8°
OP3POP1107.2°109.5°
OP3POP2107.3°109.5°
OP3PO6'105.5°109.5°
OP1POP2120.6°109.5°
OP1PO6'107.4°109.5°
OP2PO6'107.9°109.5°
POP2HOP2109.5°106.8°
PO6'C6'122.1°106.8°
O6'C6'C5'109.1°109.5°
O6'C6'H6'1109.7°109.5°
O6'C6'H6'2109.6°109.5°
C5'C6'H6'1109.7°109.5°
C5'C6'H6'2109.6°109.5°
C6'C5'O5'108.1°109.4°
C6'C5'C4'112.9°109.4°
C6'C5'H5'107.6°109.4°
H6'1C6'H6'2109.2°109.5°
O5'C5'C4'107.9°109.7°
O5'C5'H5'112.7°109.5°
C5'O5'C1'114.0°107.6°
C4'C5'H5'107.8°109.4°
C5'C4'O4'107.1°109.6°
C5'C4'C3'105.7°109.0°
C5'C4'H4'114.8°109.6°
O5'C1'C2'107.3°109.7°
O5'C1'N1105.7°109.4°
O5'C1'H1'114.6°109.4°
O4'C4'C3'113.5°109.5°
O4'C4'H4'107.3°109.5°
C4'O4'H4T109.5°106.7°
C3'C4'H4'108.6°109.5°
C4'C3'C2'112.1°108.6°
C4'C3'H3'1108.0°109.7°
C4'C3'H3'2108.6°109.6°
C2'C3'H3'1108.0°109.6°
C2'C3'H3'2108.6°109.6°
C3'C2'C1'105.7°109.0°
C3'C2'H2'1111.6°109.5°
C3'C2'H2'2110.7°109.6°
H3'1C3'H3'2111.5°109.8°
C1'C2'H2'1111.5°109.5°
C1'C2'H2'2110.7°109.6°
C2'C1'N1113.2°109.4°
C2'C1'H1'107.3°109.4°
H2'1C2'H2'2106.6°109.6°
N1C1'H1'108.8°109.5°
C1'N1C2120.7°119.9°
C1'N1C6118.2°119.8°
C2N1C6120.9°120.4°
N1C2O2119.0°119.5°
N1C2N3118.7°121.1°
N1C6C5120.8°119.3°
N1C6H6119.6°120.4°
O2C2N3122.2°119.4°
C2N3C4119.6°120.7°
C5C6H6119.6°120.4°
C6C5C4118.7°119.0°
C6C5H5120.7°120.5°
C4C5H5120.6°120.5°
C5C4N3121.2°119.6°
C5C4N4119.6°120.2°
N3C4N4119.2°120.2°
C4N4HN41125.3°120.1°
C4N4HN42109.5°120.0°
HN41N4HN42125.2°119.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
OP3POP1OP2122.9°120.0°
OP3POP1O6'113.0°120.0°
OP3POP2O6'113.3°120.0°
OP3POP2HOP2115.0°59.9°
OP3PO6'C6'162.9°65.0°
HOP3OP3POP1112.9°180.0°
HOP3OP3POP217.9°60.0°
HOP3OP3PO6'132.8°60.0°
OP1POP2O6'123.8°120.0°
OP1POP2HOP27.9°60.0°
OP1PO6'C6'83.0°55.0°
OP2PO6'C6'48.5°175.0°
O6'POP2HOP2131.8°180.0°
PO6'C6'C5'156.9°180.0°
PO6'C6'H6'183.0°60.0°
PO6'C6'H6'236.9°60.0°
O6'C6'C5'H6'1120.2°120.0°
O6'C6'C5'H6'2120.0°120.0°
O6'C6'H6'1H6'2120.1°120.0°
O6'C6'C5'O5'66.2°64.8°
O6'C6'C5'C4'174.5°175.0°
O6'C6'C5'H5'55.7°55.2°
C5'C6'H6'1H6'2120.1°120.0°
C6'C5'O5'C4'122.4°120.0°
C6'C5'O5'H5'118.7°119.9°
C6'C5'C4'H5'118.7°119.8°
C6'C5'O5'C1'171.3°172.2°
C6'C5'C4'O4'60.3°58.8°
C6'C5'C4'C3'178.5°178.7°
C6'C5'C4'H4'58.7°61.5°
H6'1C6'C5'O5'173.6°175.2°
H6'1C6'C5'C4'54.4°55.0°
H6'1C6'C5'H5'64.5°64.8°
H6'2C6'C5'O5'53.7°55.2°
H6'2C6'C5'C4'65.5°65.0°
H6'2C6'C5'H5'175.7°175.2°
O5'C5'C4'H5'121.9°120.2°
O5'C5'C4'O4'179.7°178.8°
O5'C5'C4'C3'59.1°61.3°
O5'C5'C4'H4'60.6°58.5°
C5'O5'C1'C2'65.8°67.7°
C5'O5'C1'N1173.1°172.3°
C5'O5'C1'H1'53.2°52.3°
C4'C5'O5'C1'66.3°67.8°
C5'C4'O4'C3'116.3°119.6°
C5'C4'O4'H4'123.8°120.3°
C5'C4'C3'H4'123.7°119.9°
C5'C4'O4'H4T77.5°179.6°
C5'C4'C3'C2'60.3°53.7°
C5'C4'C3'H3'158.6°66.0°
C5'C4'C3'H3'2179.7°173.4°
H5'C5'O5'C1'52.6°52.4°
H5'C5'C4'O4'58.4°61.0°
H5'C5'C4'C3'62.9°58.8°
H5'C5'C4'H4'177.4°178.7°
O5'C1'C2'C3'58.7°61.3°
O5'C1'C2'N1116.2°120.0°
O5'C1'C2'H1'123.6°120.0°
O5'C1'C2'H2'1179.9°178.8°
O5'C1'C2'H2'261.3°58.6°
O5'C1'N1H1'123.6°119.9°
O5'C1'N1C2117.3°55.0°
O5'C1'N1C658.4°124.9°
O4'C4'C3'H4'119.2°120.2°
O4'C4'C3'C2'177.3°173.7°
O4'C4'C3'H3'158.4°53.9°
O4'C4'C3'H3'262.7°66.6°
C3'C4'O4'H4T38.7°60.0°
C4'C3'C2'H3'1118.9°119.8°
C4'C3'C2'H3'2120.0°119.7°
C4'C3'H3'1H3'2119.3°120.5°
C4'C3'C2'C1'60.1°53.8°
C4'C3'C2'H2'1178.5°173.6°
C4'C3'C2'H2'259.9°66.2°
H4'C4'O4'H4T158.7°60.2°
H4'C4'C3'C2'63.5°66.2°
H4'C4'C3'H3'1177.7°174.1°
H4'C4'C3'H3'256.6°53.5°
C2'C3'H3'1H3'2119.3°120.4°
C3'C2'C1'H2'1121.4°119.8°
C3'C2'C1'H2'2120.0°119.9°
C3'C2'H2'1H2'2121.0°120.2°
C3'C2'C1'N1175.0°178.6°
C3'C2'C1'H1'64.9°58.7°
H3'1C3'C2'C1'58.8°66.0°
H3'1C3'C2'H2'162.6°53.8°
H3'1C3'C2'H2'2178.8°174.1°
H3'2C3'C2'C1'179.8°173.5°
H3'2C3'C2'H2'158.4°66.7°
H3'2C3'C2'H2'260.2°53.5°
C1'C2'H2'1H2'2121.0°120.3°
C2'C1'N1H1'119.2°119.9°
C2'C1'N1C2125.5°65.2°
C2'C1'N1C658.8°114.9°
H2'1C2'C1'N163.6°58.8°
H2'1C2'C1'H1'56.5°61.1°
H2'2C2'C1'N155.0°61.5°
H2'2C2'C1'H1'175.1°178.6°
C1'N1C2C6175.6°179.9°
C1'N1C2O25.3°0.1°
C1'N1C2N3178.9°180.0°
C1'N1C6C5178.6°179.6°
C1'N1C6H61.4°0.0°
H1'C1'N1C26.3°175.0°
H1'C1'N1C6178.1°5.0°
N1C2O2N3175.6°179.9°
C2N1C6C52.9°0.3°
C2N1C6H6177.1°180.0°
N1C2N3C43.5°0.1°
C6N1C2O2179.1°180.0°
C6N1C2N33.3°0.1°
N1C6C5H6180.0°179.7°
N1C6C5C42.6°0.6°
N1C6C5H5177.4°180.0°
O2C2N3C4179.1°180.0°
C2N3C4C53.2°0.2°
C2N3C4N4179.0°179.9°
C6C5C4H5180.0°179.4°
C6C5C4N32.8°0.6°
C6C5C4N4179.5°179.7°
H6C6C5C4177.4°179.7°
H6C6C5H52.6°0.4°
C5C4N3N4177.8°179.7°
C5C4N4HN41178.9°179.7°
C5C4N4HN421.1°0.6°
H5C5C4N3177.2°180.0°
H5C5C4N40.5°0.3°
N3C4N4HN411.1°0.0°
N3C4N4HN42178.9°179.8°
C4N4HN41HN42180.0°179.8°

248636

PDB entries from 2026-02-04

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