X6H

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O6	C6	doub	1.22Å	1.25Å
C6	N1	sing	1.35Å	1.36Å
C6	C5	sing	1.41Å	1.48Å
C8A	N1	sing	1.38Å	1.36Å
C8A	C7A	doub	1.35Å	1.40Å
P	OP1	doub	1.48Å	1.51Å
P	OP3	sing	1.61Å	1.51Å
P	O5'	sing	1.61Å	1.60Å
N7	C5	sing	1.36Å	1.35Å	Aromatic
N7	C8	doub	1.30Å	1.37Å	Aromatic
N1	C2	sing	1.37Å	1.39Å
C7A	C6A	sing	1.42Å	1.39Å
C5	C4	doub	1.40Å	1.37Å	Aromatic
C5'	O5'	sing	1.43Å	1.42Å
C5'	C4'	sing	1.53Å	1.52Å
C8	N9	sing	1.36Å	1.34Å	Aromatic
C2	N3	doub	1.32Å	1.33Å
C2	N2	sing	1.38Å	1.35Å
C4	N9	sing	1.37Å	1.31Å	Aromatic
C4	N3	sing	1.34Å	1.34Å
C6A	N2	sing	1.35Å	1.34Å
C6A	O6A	doub	1.22Å	1.26Å
N9	C1'	sing	1.46Å	1.48Å
O4'	C4'	sing	1.44Å	1.42Å
O4'	C1'	sing	1.44Å	1.44Å
C4'	C3'	sing	1.55Å	1.51Å
C1'	C2'	sing	1.54Å	1.52Å
C3'	C2'	sing	1.55Å	1.52Å
C3'	O3'	sing	1.43Å	1.43Å
P	OP2	sing	1.61Å	1.60Å
C1'	H1'	sing	1.09Å	1.10Å
C2'	H2'	sing	1.09Å	1.10Å
C2'	H2''	sing	1.09Å	1.10Å
C3'	H3'	sing	1.09Å	1.10Å
C4'	H4'	sing	1.09Å	1.10Å
C5'	H5'	sing	1.09Å	1.10Å
C5'	H5''	sing	1.09Å	1.10Å
C7A	H1	sing	1.08Å	1.08Å
C8	H8	sing	1.08Å	1.08Å
C8A	H10	sing	1.08Å	1.08Å
N2	H21	sing	0.97Å	1.00Å
O3'	HO3'	sing	0.97Å	0.95Å
OP3	HOP3	sing	0.97Å	0.95Å
OP2	HOP2	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O6	C6	N1	121.5°	120.7°
O6	C6	C5	120.9°	120.7°
N1	C6	C5	117.6°	118.5°
C6	N1	C8A	121.6°	119.1°
C6	N1	C2	121.0°	120.4°
C6	C5	N7	137.5°	134.2°
C6	C5	C4	116.7°	118.5°
N1	C8A	C7A	118.4°	120.1°
C8A	N1	C2	117.5°	120.4°
N1	C8A	H10	120.8°	120.0°
C8A	C7A	C6A	122.7°	119.6°
C8A	C7A	H1	118.7°	120.2°
C7A	C8A	H10	120.8°	119.9°
OP1	P	OP3	110.8°	109.4°
OP1	P	O5'	111.8°	109.5°
OP1	P	OP2	111.8°	109.5°
OP3	P	O5'	109.9°	109.5°
OP3	P	OP2	109.0°	109.5°
P	OP3	HOP3	109.5°	113.9°
P	O5'	C5'	120.2°	123.0°
O5'	P	OP2	103.2°	109.5°
C5	N7	C8	108.0°	109.3°
N7	C5	C4	105.7°	107.3°
N7	C8	N9	107.7°	109.9°
N7	C8	H8	126.1°	125.1°
N1	C2	N3	120.7°	121.4°
N1	C2	N2	123.8°	119.9°
C7A	C6A	N2	117.3°	119.7°
C7A	C6A	O6A	122.4°	120.2°
C6A	C7A	H1	118.6°	120.2°
C5	C4	N9	110.2°	106.0°
C5	C4	N3	122.7°	119.7°
O5'	C5'	C4'	109.2°	109.5°
O5'	C5'	H5'	109.5°	109.4°
O5'	C5'	H5''	109.5°	109.5°
C5'	C4'	O4'	111.0°	110.7°
C5'	C4'	C3'	110.3°	110.6°
C5'	C4'	H4'	109.8°	110.6°
C4'	C5'	H5'	109.5°	109.4°
C4'	C5'	H5''	109.5°	109.5°
C8	N9	C4	108.3°	107.5°
C8	N9	C1'	135.7°	126.3°
N9	C8	H8	126.1°	125.0°
N3	C2	N2	115.6°	118.8°
C2	N3	C4	121.3°	121.5°
C2	N2	C6A	120.3°	120.3°
C2	N2	H21	119.8°	119.8°
N9	C4	N3	127.2°	134.3°
C4	N9	C1'	115.9°	126.2°
N2	C6A	O6A	120.3°	120.1°
C6A	N2	H21	119.8°	119.9°
N9	C1'	O4'	104.0°	110.0°
N9	C1'	C2'	118.4°	109.9°
N9	C1'	H1'	108.7°	109.8°
C4'	O4'	C1'	110.2°	107.0°
O4'	C4'	C3'	104.4°	103.4°
O4'	C4'	H4'	111.2°	110.7°
O4'	C1'	C2'	108.0°	107.3°
O4'	C1'	H1'	109.2°	109.9°
C4'	C3'	C2'	106.0°	102.1°
C4'	C3'	O3'	103.1°	110.9°
C4'	C3'	H3'	111.6°	111.0°
C3'	C4'	H4'	110.0°	110.6°
C1'	C2'	C3'	99.5°	104.1°
C2'	C1'	H1'	108.2°	109.9°
C1'	C2'	H2'	111.9°	110.5°
C1'	C2'	H2''	111.9°	110.4°
C2'	C3'	O3'	111.3°	110.9°
C3'	C2'	H2'	111.9°	110.5°
C3'	C2'	H2''	111.9°	110.6°
C2'	C3'	H3'	111.4°	110.9°
O3'	C3'	H3'	112.9°	110.8°
C3'	O3'	HO3'	109.5°	114.0°
P	OP2	HOP2	109.5°	114.0°
H2'	C2'	H2''	109.5°	110.5°
H5'	C5'	H5''	109.4°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O6	C6	N1	C5	179.5°	179.5°
O6	C6	N1	C8A	0.6°	0.0°
O6	C6	C5	N7	1.1°	0.4°
O6	C6	N1	C2	179.6°	180.0°
O6	C6	C5	C4	179.2°	179.7°
C6	N1	C8A	C2	179.9°	180.0°
C6	N1	C8A	C7A	178.2°	179.9°
N1	C6	C5	N7	179.4°	179.9°
N1	C6	C5	C4	0.3°	0.7°
C6	N1	C2	N3	0.1°	0.0°
C6	N1	C2	N2	179.5°	179.7°
C6	N1	C8A	H10	1.8°	0.1°
C5	C6	N1	C8A	179.9°	179.5°
C6	C5	N7	C4	179.6°	179.4°
C6	C5	N7	C8	179.8°	179.4°
C5	C6	N1	C2	0.0°	0.5°
C6	C5	C4	N9	179.4°	179.5°
C6	C5	C4	N3	0.6°	0.5°
N1	C8A	C7A	H10	180.0°	180.0°
N1	C8A	C7A	C6A	3.2°	0.4°
C8A	N1	C2	N3	179.9°	180.0°
C8A	N1	C2	N2	0.6°	0.3°
N1	C8A	C7A	H1	176.8°	180.0°
C7A	C8A	N1	C2	1.9°	0.1°
C8A	C7A	C6A	H1	180.0°	179.6°
C8A	C7A	C6A	N2	3.0°	0.3°
C8A	C7A	C6A	O6A	178.5°	179.7°
OP1	P	OP3	O5'	124.0°	120.0°
OP1	P	OP3	OP2	123.5°	120.0°
OP1	P	O5'	OP2	120.3°	120.1°
OP1	P	O5'	C5'	172.9°	54.9°
OP1	P	OP3	HOP3	0.0°	180.0°
OP1	P	OP2	HOP2	0.0°	60.0°
OP3	P	O5'	OP2	116.2°	120.0°
OP3	P	O5'	C5'	63.7°	65.0°
OP3	P	OP2	HOP2	122.9°	60.0°
P	O5'	C5'	C4'	163.5°	180.0°
P	O5'	C5'	H5'	43.5°	60.0°
P	O5'	C5'	H5''	76.6°	60.0°
O5'	P	OP3	HOP3	124.0°	60.0°
O5'	P	OP2	HOP2	120.3°	180.0°
C5	N7	C8	N9	0.6°	0.0°
N7	C5	C4	N9	0.4°	0.0°
N7	C5	C4	N3	179.1°	180.0°
C5	N7	C8	H8	179.4°	179.9°
C8	N7	C5	C4	0.2°	0.0°
N7	C8	N9	H8	180.0°	179.9°
N7	C8	N9	C4	0.8°	0.0°
N7	C8	N9	C1'	178.1°	179.9°
N1	C2	N3	N2	179.5°	179.7°
N1	C2	N3	C4	0.2°	0.3°
N1	C2	N2	C6A	0.4°	0.3°
C2	N1	C8A	H10	178.1°	179.9°
N1	C2	N2	H21	179.6°	179.7°
C7A	C6A	N2	C2	1.6°	0.0°
C7A	C6A	N2	O6A	178.6°	180.0°
C6A	C7A	C8A	H10	176.8°	179.6°
C7A	C6A	N2	H21	178.5°	180.0°
C5	C4	N9	C8	0.8°	0.0°
C5	C4	N3	C2	0.6°	0.0°
C5	C4	N9	N3	178.7°	180.0°
C5	C4	N9	C1'	178.6°	180.0°
O5'	C5'	C4'	H5'	120.0°	120.0°
O5'	C5'	C4'	H5''	120.0°	120.1°
O5'	C5'	C4'	O4'	71.2°	70.9°
O5'	C5'	C4'	C3'	44.1°	175.0°
C5'	O5'	P	OP2	52.5°	175.0°
O5'	C5'	C4'	H4'	165.5°	52.1°
O5'	C5'	H5'	H5''	120.1°	120.0°
C5'	C4'	O4'	C3'	118.9°	118.5°
C5'	C4'	O4'	H4'	122.6°	123.0°
C5'	C4'	O4'	C1'	107.0°	158.6°
C5'	C4'	C3'	H4'	121.3°	122.9°
C5'	C4'	C3'	C2'	89.9°	155.7°
C5'	C4'	C3'	O3'	153.0°	86.2°
C5'	C4'	C3'	H3'	31.6°	37.4°
C4'	C5'	H5'	H5''	120.1°	120.0°
C8	N9	C4	C1'	177.8°	180.0°
C8	N9	C4	N3	179.5°	180.0°
C8	N9	C1'	O4'	102.3°	23.0°
C8	N9	C1'	C2'	17.5°	95.0°
C8	N9	C1'	H1'	141.4°	144.0°
C2	N3	C4	N9	179.2°	180.0°
N3	C2	N2	C6A	179.9°	180.0°
N3	C2	N2	H21	0.1°	0.0°
N2	C2	N3	C4	179.2°	180.0°
C2	N2	C6A	H21	180.0°	180.0°
C2	N2	C6A	O6A	179.9°	180.0°
C4	N9	C1'	O4'	74.8°	157.1°
C4	N9	C1'	C2'	165.5°	84.9°
C4	N9	C1'	H1'	41.5°	36.0°
C4	N9	C8	H8	179.1°	179.9°
N3	C4	N9	C1'	2.7°	0.1°
N2	C6A	C7A	H1	177.0°	180.0°
O6A	C6A	C7A	H1	1.5°	0.1°
O6A	C6A	N2	H21	0.1°	0.0°
N9	C1'	O4'	C4'	136.9°	146.1°
N9	C1'	O4'	C2'	126.6°	119.5°
N9	C1'	O4'	H1'	115.9°	121.0°
N9	C1'	C2'	H1'	124.2°	121.0°
N9	C1'	C2'	C3'	144.8°	121.6°
N9	C1'	C2'	H2'	96.9°	119.7°
N9	C1'	C2'	H2''	26.4°	2.8°
C1'	N9	C8	H8	1.9°	0.0°
O4'	C4'	C3'	H4'	119.4°	118.5°
C4'	O4'	C1'	C2'	10.3°	26.5°
O4'	C4'	C3'	C2'	29.5°	37.1°
O4'	C4'	C3'	O3'	87.6°	155.2°
C4'	O4'	C1'	H1'	107.2°	92.9°
O4'	C4'	C3'	H3'	150.9°	81.1°
O4'	C4'	C5'	H5'	168.9°	169.1°
O4'	C4'	C5'	H5''	48.8°	49.2°
C1'	O4'	C4'	C3'	11.8°	40.1°
O4'	C1'	C2'	H1'	118.1°	119.4°
O4'	C1'	C2'	C3'	27.1°	2.0°
O4'	C1'	C2'	H2'	145.5°	120.7°
O4'	C1'	C2'	H2''	91.2°	116.7°
C1'	O4'	C4'	H4'	130.4°	78.4°
C4'	C3'	C2'	C1'	34.1°	20.9°
C4'	C3'	C2'	O3'	111.4°	118.2°
C4'	C3'	C2'	H3'	121.6°	118.3°
C4'	C3'	O3'	H3'	120.6°	123.7°
C4'	C3'	C2'	H2'	152.5°	97.7°
C4'	C3'	C2'	H2''	84.3°	139.6°
C3'	C4'	C5'	H5'	75.9°	55.1°
C3'	C4'	C5'	H5''	164.1°	64.9°
C4'	C3'	O3'	HO3'	180.0°	174.1°
C1'	C2'	C3'	H2'	118.4°	118.6°
C1'	C2'	C3'	H2''	118.4°	118.7°
C1'	C2'	C3'	O3'	77.4°	139.1°
C1'	C2'	H2'	H2''	124.6°	122.5°
C1'	C2'	C3'	H3'	155.7°	97.3°
C2'	C3'	O3'	H3'	126.2°	123.6°
C3'	C2'	C1'	H1'	91.0°	117.4°
C3'	C2'	H2'	H2''	124.6°	122.8°
C2'	C3'	C4'	H4'	148.9°	81.5°
C2'	C3'	O3'	HO3'	66.8°	61.5°
O3'	C3'	C2'	H2'	41.0°	20.5°
O3'	C3'	C2'	H2''	164.3°	102.3°
O3'	C3'	C4'	H4'	31.8°	36.7°
OP2	P	OP3	HOP3	123.5°	60.0°
H1'	C1'	C2'	H2'	27.4°	1.2°
H1'	C1'	C2'	H2''	150.6°	123.8°
H2'	C2'	C3'	H3'	86.0°	144.0°
H2''	C2'	C3'	H3'	37.3°	21.3°
H3'	C3'	C4'	H4'	89.7°	160.3°
H3'	C3'	O3'	HO3'	59.4°	62.1°
H4'	C4'	C5'	H5'	45.5°	67.8°
H4'	C4'	C5'	H5''	74.5°	172.2°
H1	C7A	C8A	H10	3.2°	0.0°

Release date:	2023-08-02
Definition date:	2022-10-31
Last modified:	2023-07-28
Release status:	REL
Processing site:	RCSB
Derived from:	8EVF