X4A
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP3 | P | sing | 1.61Å | 1.64Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| P | OP1 | doub | 1.48Å | 1.49Å | |
| P | OP2 | sing | 1.61Å | 1.45Å | |
| P | O5' | sing | 1.61Å | 1.59Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.43Å | |
| C5' | C4' | sing | 1.53Å | 1.49Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| C4' | O4A | sing | 1.43Å | 1.36Å | |
| C4' | O4' | sing | 1.43Å | 1.39Å | |
| C4' | C3' | sing | 1.54Å | 1.62Å | |
| O4A | H4A | sing | 0.97Å | 0.95Å | |
| O4' | C1' | sing | 1.44Å | 1.42Å | |
| C1' | O1A | sing | 1.43Å | 1.39Å | |
| C1' | C2' | sing | 1.55Å | 1.54Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| O1A | H1A | sing | 0.97Å | 0.95Å | |
| C3' | C2' | sing | 1.55Å | 1.55Å | |
| C3' | O3' | sing | 1.43Å | 1.45Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C2' | H2'' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| P | OP3 | HOP3 | 109.5° | 106.8° |
| OP3 | P | OP1 | 108.3° | 109.5° |
| OP3 | P | OP2 | 110.0° | 109.5° |
| OP3 | P | O5' | 101.3° | 109.5° |
| OP1 | P | OP2 | 120.2° | 109.5° |
| OP1 | P | O5' | 109.2° | 109.5° |
| OP2 | P | O5' | 106.2° | 109.5° |
| P | OP2 | HOP2 | 109.5° | 106.8° |
| P | O5' | C5' | 123.9° | 106.8° |
| O5' | C5' | C4' | 105.6° | 109.5° |
| O5' | C5' | H5' | 111.6° | 109.5° |
| O5' | C5' | H5'' | 110.8° | 109.4° |
| C4' | C5' | H5' | 111.6° | 109.5° |
| C4' | C5' | H5'' | 110.8° | 109.5° |
| C5' | C4' | O4A | 111.3° | 109.8° |
| C5' | C4' | O4' | 111.1° | 109.8° |
| C5' | C4' | C3' | 109.2° | 109.8° |
| H5' | C5' | H5'' | 106.5° | 109.5° |
| O4A | C4' | O4' | 109.5° | 109.9° |
| O4A | C4' | C3' | 108.5° | 109.9° |
| C4' | O4A | H4A | 109.5° | 106.8° |
| O4' | C4' | C3' | 107.0° | 107.6° |
| C4' | O4' | C1' | 107.8° | 109.9° |
| C4' | C3' | C2' | 100.6° | 102.2° |
| C4' | C3' | O3' | 116.5° | 111.0° |
| C4' | C3' | H3' | 110.2° | 110.9° |
| O4' | C1' | O1A | 112.7° | 110.3° |
| O4' | C1' | C2' | 103.8° | 105.2° |
| O4' | C1' | H1' | 109.8° | 110.3° |
| O1A | C1' | C2' | 105.0° | 110.3° |
| O1A | C1' | H1' | 108.6° | 110.3° |
| C1' | O1A | H1A | 109.5° | 106.8° |
| C2' | C1' | H1' | 116.9° | 110.3° |
| C1' | C2' | C3' | 99.6° | 100.9° |
| C1' | C2' | H2' | 114.9° | 111.1° |
| C1' | C2' | H2'' | 112.9° | 111.1° |
| C2' | C3' | O3' | 107.2° | 110.8° |
| C2' | C3' | H3' | 119.0° | 110.8° |
| C3' | C2' | H2' | 114.9° | 111.1° |
| C3' | C2' | H2'' | 112.9° | 111.1° |
| O3' | C3' | H3' | 103.9° | 110.8° |
| C3' | O3' | HO3' | 109.5° | 106.8° |
| H2' | C2' | H2'' | 102.1° | 111.1° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP3 | P | OP1 | OP2 | 127.5° | 120.0° |
| OP3 | P | OP1 | O5' | 109.5° | 120.0° |
| OP3 | P | OP2 | O5' | 108.9° | 120.0° |
| OP3 | P | OP2 | HOP2 | 145.4° | 60.0° |
| OP3 | P | O5' | C5' | 81.2° | 65.0° |
| HOP3 | OP3 | P | OP1 | 155.4° | 180.0° |
| HOP3 | OP3 | P | OP2 | 22.2° | 60.0° |
| HOP3 | OP3 | P | O5' | 89.8° | 60.0° |
| OP1 | P | OP2 | O5' | 124.4° | 120.0° |
| OP1 | P | OP2 | HOP2 | 18.7° | 60.0° |
| OP1 | P | O5' | C5' | 32.9° | 55.0° |
| OP2 | P | O5' | C5' | 163.8° | 175.0° |
| O5' | P | OP2 | HOP2 | 105.7° | 180.0° |
| P | O5' | C5' | C4' | 173.5° | 180.0° |
| P | O5' | C5' | H5' | 65.0° | 60.0° |
| P | O5' | C5' | H5'' | 53.5° | 60.0° |
| O5' | C5' | C4' | H5' | 121.5° | 120.0° |
| O5' | C5' | C4' | H5'' | 120.0° | 120.0° |
| O5' | C5' | H5' | H5'' | 121.0° | 120.0° |
| O5' | C5' | C4' | O4A | 64.9° | 59.1° |
| O5' | C5' | C4' | O4' | 57.4° | 61.8° |
| O5' | C5' | C4' | C3' | 175.3° | 180.0° |
| C4' | C5' | H5' | H5'' | 121.0° | 120.0° |
| C5' | C4' | O4A | O4' | 123.3° | 120.9° |
| C5' | C4' | O4A | C3' | 120.2° | 120.8° |
| C5' | C4' | O4' | C3' | 119.2° | 119.5° |
| C5' | C4' | O4A | H4A | 61.3° | 59.1° |
| C5' | C4' | O4' | C1' | 97.9° | 117.9° |
| C5' | C4' | C3' | C2' | 128.3° | 141.0° |
| C5' | C4' | C3' | O3' | 116.3° | 100.8° |
| C5' | C4' | C3' | H3' | 1.8° | 22.8° |
| H5' | C5' | C4' | O4A | 56.6° | 60.9° |
| H5' | C5' | C4' | O4' | 178.9° | 178.2° |
| H5' | C5' | C4' | C3' | 63.2° | 60.0° |
| H5'' | C5' | C4' | O4A | 175.1° | 179.1° |
| H5'' | C5' | C4' | O4' | 62.6° | 58.1° |
| H5'' | C5' | C4' | C3' | 55.3° | 60.0° |
| O4A | C4' | O4' | C3' | 117.4° | 119.6° |
| O4A | C4' | O4' | C1' | 138.7° | 121.2° |
| O4A | C4' | C3' | C2' | 110.2° | 98.2° |
| O4A | C4' | C3' | O3' | 5.3° | 20.1° |
| O4A | C4' | C3' | H3' | 123.3° | 143.7° |
| O4' | C4' | O4A | H4A | 175.4° | 61.8° |
| C4' | O4' | C1' | O1A | 155.9° | 143.3° |
| C4' | O4' | C1' | C2' | 42.8° | 24.3° |
| C4' | O4' | C1' | H1' | 82.8° | 94.6° |
| O4' | C4' | C3' | C2' | 7.9° | 21.4° |
| O4' | C4' | C3' | O3' | 123.4° | 139.7° |
| O4' | C4' | C3' | H3' | 118.6° | 96.7° |
| C3' | C4' | O4A | H4A | 58.9° | 179.9° |
| C3' | C4' | O4' | C1' | 21.3° | 1.6° |
| C4' | C3' | C2' | C1' | 30.6° | 34.1° |
| C4' | C3' | C2' | O3' | 122.2° | 118.4° |
| C4' | C3' | C2' | H3' | 120.4° | 118.2° |
| C4' | C3' | O3' | H3' | 121.4° | 123.6° |
| C4' | C3' | C2' | H2' | 154.0° | 83.8° |
| C4' | C3' | C2' | H2'' | 89.4° | 152.0° |
| C4' | C3' | O3' | HO3' | 97.1° | 174.4° |
| O4' | C1' | O1A | C2' | 112.3° | 115.8° |
| O4' | C1' | O1A | H1' | 121.8° | 122.1° |
| O4' | C1' | C2' | H1' | 121.0° | 119.0° |
| O4' | C1' | O1A | H1A | 94.9° | 62.8° |
| O4' | C1' | C2' | C3' | 45.5° | 36.4° |
| O4' | C1' | C2' | H2' | 168.9° | 81.5° |
| O4' | C1' | C2' | H2'' | 74.5° | 154.3° |
| O1A | C1' | C2' | H1' | 120.5° | 122.0° |
| O1A | C1' | C2' | C3' | 164.1° | 155.4° |
| O1A | C1' | C2' | H2' | 72.6° | 37.5° |
| O1A | C1' | C2' | H2'' | 44.0° | 86.7° |
| C2' | C1' | O1A | H1A | 17.5° | 178.6° |
| C1' | C2' | C3' | H2' | 123.4° | 117.9° |
| C1' | C2' | C3' | H2'' | 120.0° | 117.9° |
| C1' | C2' | C3' | O3' | 152.8° | 152.5° |
| C1' | C2' | C3' | H3' | 89.7° | 84.1° |
| C1' | C2' | H2' | H2'' | 122.6° | 124.2° |
| H1' | C1' | O1A | H1A | 143.3° | 59.3° |
| H1' | C1' | C2' | C3' | 75.4° | 82.6° |
| H1' | C1' | C2' | H2' | 47.9° | 159.5° |
| H1' | C1' | C2' | H2'' | 164.5° | 35.3° |
| C2' | C3' | O3' | H3' | 126.9° | 123.5° |
| C3' | C2' | H2' | H2'' | 122.6° | 124.2° |
| C2' | C3' | O3' | HO3' | 151.3° | 61.5° |
| O3' | C3' | C2' | H2' | 83.8° | 34.6° |
| O3' | C3' | C2' | H2'' | 32.8° | 89.6° |
| H3' | C3' | C2' | H2' | 33.6° | 158.1° |
| H3' | C3' | C2' | H2'' | 150.2° | 33.9° |
| H3' | C3' | O3' | HO3' | 24.4° | 62.0° |
