X46
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C1 | C2 | doub | 1.39Å | 1.49Å | Aromatic |
| C1 | C5 | sing | 1.38Å | 1.48Å | Aromatic |
| N1 | C13 | sing | 1.31Å | 1.36Å | Aromatic |
| N1 | C14 | doub | 1.30Å | 1.36Å | Aromatic |
| S1 | C12 | sing | 1.76Å | 1.70Å | Aromatic |
| S1 | C14 | sing | 1.71Å | 1.72Å | Aromatic |
| C2 | C3 | sing | 1.39Å | 1.45Å | Aromatic |
| C2 | O6 | sing | 1.36Å | 1.43Å | |
| N2 | C13 | sing | 1.39Å | 1.36Å | |
| C3 | C10 | doub | 1.40Å | 1.49Å | Aromatic |
| N3 | C14 | sing | 1.38Å | 1.40Å | |
| N3 | C15 | sing | 1.40Å | 1.41Å | |
| O3 | C11 | doub | 1.22Å | 1.36Å | |
| C4 | C5 | doub | 1.38Å | 1.45Å | Aromatic |
| C4 | C10 | sing | 1.40Å | 1.48Å | Aromatic |
| O6 | C7 | sing | 1.43Å | 1.34Å | |
| C10 | C11 | sing | 1.48Å | 1.51Å | |
| C11 | C12 | sing | 1.41Å | 1.51Å | |
| C12 | C13 | doub | 1.38Å | 1.39Å | Aromatic |
| C15 | C16 | doub | 1.39Å | 1.52Å | Aromatic |
| C15 | C20 | sing | 1.39Å | 1.48Å | Aromatic |
| C16 | C17 | sing | 1.38Å | 1.44Å | Aromatic |
| C17 | C18 | doub | 1.38Å | 1.46Å | Aromatic |
| C18 | C19 | sing | 1.38Å | 1.48Å | Aromatic |
| C19 | C20 | doub | 1.38Å | 1.44Å | Aromatic |
| C1 | H1 | sing | 1.08Å | 1.08Å | |
| N2 | HN2 | sing | 0.97Å | 1.00Å | |
| N2 | HN2A | sing | 0.97Å | 1.00Å | |
| C3 | H3 | sing | 1.08Å | 1.08Å | |
| N3 | HN3 | sing | 0.97Å | 1.00Å | |
| C4 | H4 | sing | 1.08Å | 1.08Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C7 | H7 | sing | 1.09Å | 1.10Å | |
| C7 | H7A | sing | 1.09Å | 1.10Å | |
| C7 | H7B | sing | 1.09Å | 1.10Å | |
| C16 | H16 | sing | 1.08Å | 1.08Å | |
| C17 | H17 | sing | 1.08Å | 1.08Å | |
| C18 | H18 | sing | 1.08Å | 1.08Å | |
| C19 | H19 | sing | 1.08Å | 1.08Å | |
| C20 | H20 | sing | 1.08Å | 1.08Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C2 | C1 | C5 | 120.5° | 120.2° |
| C1 | C2 | C3 | 119.2° | 120.0° |
| C1 | C2 | O6 | 123.2° | 120.0° |
| C2 | C1 | H1 | 119.8° | 119.9° |
| C1 | C5 | C4 | 119.3° | 120.2° |
| C5 | C1 | H1 | 119.8° | 119.9° |
| C1 | C5 | H5 | 120.3° | 119.9° |
| C13 | N1 | C14 | 111.0° | 117.3° |
| N1 | C13 | N2 | 122.6° | 123.2° |
| N1 | C13 | C12 | 113.7° | 113.6° |
| N1 | C14 | S1 | 113.8° | 110.8° |
| N1 | C14 | N3 | 120.8° | 124.6° |
| C12 | S1 | C14 | 89.8° | 90.5° |
| S1 | C12 | C11 | 121.7° | 126.1° |
| S1 | C12 | C13 | 111.6° | 107.7° |
| S1 | C14 | N3 | 125.4° | 124.6° |
| C3 | C2 | O6 | 117.6° | 120.0° |
| C2 | C3 | C10 | 120.9° | 119.8° |
| C2 | C3 | H3 | 119.5° | 120.1° |
| C2 | O6 | C7 | 125.9° | 117.0° |
| N2 | C13 | C12 | 123.6° | 123.2° |
| C13 | N2 | HN2 | 109.5° | 120.0° |
| C13 | N2 | HN2A | 109.5° | 120.0° |
| C3 | C10 | C4 | 118.7° | 119.8° |
| C3 | C10 | C11 | 121.6° | 120.1° |
| C10 | C3 | H3 | 119.5° | 120.1° |
| C14 | N3 | C15 | 129.5° | 120.0° |
| C14 | N3 | HN3 | 115.3° | 120.0° |
| N3 | C15 | C16 | 125.1° | 120.1° |
| N3 | C15 | C20 | 117.5° | 120.1° |
| C15 | N3 | HN3 | 115.2° | 120.0° |
| O3 | C11 | C10 | 120.8° | 120.0° |
| O3 | C11 | C12 | 118.5° | 120.0° |
| C5 | C4 | C10 | 121.3° | 120.0° |
| C5 | C4 | H4 | 119.3° | 120.0° |
| C4 | C5 | H5 | 120.4° | 119.9° |
| C4 | C10 | C11 | 119.7° | 120.1° |
| C10 | C4 | H4 | 119.3° | 120.0° |
| O6 | C7 | H7 | 109.5° | 109.5° |
| O6 | C7 | H7A | 109.5° | 109.5° |
| O6 | C7 | H7B | 109.5° | 109.4° |
| C10 | C11 | C12 | 120.7° | 120.0° |
| C11 | C12 | C13 | 126.7° | 126.2° |
| C16 | C15 | C20 | 117.4° | 119.8° |
| C15 | C16 | C17 | 121.8° | 119.9° |
| C15 | C16 | H16 | 119.1° | 120.1° |
| C15 | C20 | C19 | 120.5° | 120.0° |
| C15 | C20 | H20 | 119.8° | 120.0° |
| C16 | C17 | C18 | 119.3° | 120.1° |
| C17 | C16 | H16 | 119.1° | 120.0° |
| C16 | C17 | H17 | 120.4° | 119.9° |
| C17 | C18 | C19 | 120.2° | 120.1° |
| C18 | C17 | H17 | 120.3° | 119.9° |
| C17 | C18 | H18 | 119.9° | 119.9° |
| C18 | C19 | C20 | 120.9° | 120.0° |
| C19 | C18 | H18 | 119.9° | 119.9° |
| C18 | C19 | H19 | 119.5° | 119.9° |
| C20 | C19 | H19 | 119.6° | 120.0° |
| C19 | C20 | H20 | 119.7° | 120.0° |
| HN2 | N2 | HN2A | 109.5° | 120.0° |
| H7 | C7 | H7A | 109.5° | 109.5° |
| H7 | C7 | H7B | 109.4° | 109.4° |
| H7A | C7 | H7B | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C2 | C1 | C5 | H1 | 180.0° | 179.7° |
| C1 | C2 | C3 | O6 | 180.0° | 180.0° |
| C1 | C2 | C3 | C10 | 0.2° | 0.0° |
| C2 | C1 | C5 | C4 | 0.1° | 0.0° |
| C1 | C2 | O6 | C7 | 0.0° | 0.0° |
| C1 | C2 | C3 | H3 | 179.8° | 180.0° |
| C2 | C1 | C5 | H5 | 179.9° | 179.9° |
| C5 | C1 | C2 | C3 | 0.1° | 0.0° |
| C5 | C1 | C2 | O6 | 180.0° | 180.0° |
| C1 | C5 | C4 | H5 | 180.0° | 179.9° |
| C1 | C5 | C4 | C10 | 0.1° | 0.0° |
| C1 | C5 | C4 | H4 | 179.9° | 180.0° |
| N1 | C13 | C12 | S1 | 0.4° | 0.0° |
| C13 | N1 | C14 | S1 | 0.1° | 0.0° |
| N1 | C13 | N2 | C12 | 179.4° | 180.0° |
| C13 | N1 | C14 | N3 | 180.0° | 180.0° |
| N1 | C13 | C12 | C11 | 179.2° | 180.0° |
| N1 | C13 | N2 | HN2 | 0.0° | 0.1° |
| N1 | C13 | N2 | HN2A | 120.0° | 180.0° |
| N1 | C14 | S1 | C12 | 0.3° | 0.0° |
| N1 | C14 | S1 | N3 | 179.9° | 180.0° |
| C14 | N1 | C13 | N2 | 179.6° | 180.0° |
| N1 | C14 | N3 | C15 | 163.5° | 3.7° |
| C14 | N1 | C13 | C12 | 0.2° | 0.0° |
| N1 | C14 | N3 | HN3 | 16.5° | 176.3° |
| S1 | C12 | C13 | N2 | 179.8° | 180.0° |
| C12 | S1 | C14 | N3 | 179.8° | 180.0° |
| S1 | C12 | C11 | O3 | 179.5° | 173.1° |
| S1 | C12 | C11 | C10 | 0.2° | 6.9° |
| S1 | C12 | C11 | C13 | 179.5° | 180.0° |
| S1 | C14 | N3 | C15 | 16.6° | 176.3° |
| C14 | S1 | C12 | C11 | 179.2° | 180.0° |
| C14 | S1 | C12 | C13 | 0.4° | 0.0° |
| S1 | C14 | N3 | HN3 | 163.4° | 3.8° |
| C2 | C3 | C10 | H3 | 180.0° | 180.0° |
| C2 | C3 | C10 | C4 | 0.1° | 0.0° |
| C3 | C2 | O6 | C7 | 180.0° | 180.0° |
| C2 | C3 | C10 | C11 | 179.7° | 180.0° |
| C3 | C2 | C1 | H1 | 179.9° | 179.7° |
| O6 | C2 | C3 | C10 | 179.9° | 180.0° |
| O6 | C2 | C1 | H1 | 0.0° | 0.3° |
| O6 | C2 | C3 | H3 | 0.2° | 0.0° |
| C2 | O6 | C7 | H7 | 180.0° | 60.0° |
| C2 | O6 | C7 | H7A | 60.0° | 60.0° |
| C2 | O6 | C7 | H7B | 60.0° | 180.0° |
| N2 | C13 | C12 | C11 | 0.3° | 0.0° |
| C13 | N2 | HN2 | HN2A | 120.0° | 179.9° |
| C3 | C10 | C11 | O3 | 131.2° | 26.1° |
| C3 | C10 | C4 | C5 | 0.0° | 0.0° |
| C3 | C10 | C4 | C11 | 179.8° | 180.0° |
| C3 | C10 | C11 | C12 | 49.5° | 154.0° |
| C3 | C10 | C4 | H4 | 179.9° | 180.0° |
| C14 | N3 | C15 | HN3 | 180.0° | 179.9° |
| C14 | N3 | C15 | C16 | 0.4° | 148.0° |
| C14 | N3 | C15 | C20 | 179.4° | 32.2° |
| N3 | C15 | C16 | C20 | 179.7° | 179.7° |
| N3 | C15 | C16 | C17 | 179.7° | 180.0° |
| N3 | C15 | C20 | C19 | 179.6° | 179.7° |
| N3 | C15 | C16 | H16 | 0.4° | 0.0° |
| N3 | C15 | C20 | H20 | 0.4° | 0.0° |
| O3 | C11 | C10 | C4 | 49.0° | 154.0° |
| O3 | C11 | C10 | C12 | 179.3° | 179.9° |
| O3 | C11 | C12 | C13 | 0.0° | 6.9° |
| C5 | C4 | C10 | H4 | 180.0° | 179.9° |
| C5 | C4 | C10 | C11 | 179.8° | 179.9° |
| C4 | C5 | C1 | H1 | 179.9° | 179.7° |
| C4 | C10 | C11 | C12 | 130.3° | 26.0° |
| C4 | C10 | C3 | H3 | 179.8° | 180.0° |
| C10 | C4 | C5 | H5 | 179.9° | 179.9° |
| O6 | C7 | H7 | H7A | 120.0° | 120.0° |
| O6 | C7 | H7 | H7B | 120.0° | 120.0° |
| O6 | C7 | H7A | H7B | 120.0° | 120.0° |
| C10 | C11 | C12 | C13 | 179.4° | 173.1° |
| C11 | C10 | C3 | H3 | 0.4° | 0.1° |
| C11 | C10 | C4 | H4 | 0.2° | 0.0° |
| C12 | C13 | N2 | HN2 | 179.4° | 179.9° |
| C12 | C13 | N2 | HN2A | 60.6° | 0.1° |
| C15 | C16 | C17 | H16 | 180.0° | 180.0° |
| C15 | C16 | C17 | C18 | 0.1° | 0.0° |
| C16 | C15 | C20 | C19 | 0.1° | 0.6° |
| C16 | C15 | N3 | HN3 | 179.7° | 31.9° |
| C15 | C16 | C17 | H17 | 179.9° | 180.0° |
| C16 | C15 | C20 | H20 | 179.8° | 179.7° |
| C20 | C15 | C16 | C17 | 0.1° | 0.2° |
| C15 | C20 | C19 | C18 | 0.0° | 0.6° |
| C15 | C20 | C19 | H20 | 180.0° | 179.7° |
| C20 | C15 | N3 | HN3 | 0.6° | 147.9° |
| C20 | C15 | C16 | H16 | 179.9° | 179.8° |
| C15 | C20 | C19 | H19 | 180.0° | 179.7° |
| C16 | C17 | C18 | H17 | 180.0° | 180.0° |
| C16 | C17 | C18 | C19 | 0.2° | 0.0° |
| C16 | C17 | C18 | H18 | 179.8° | 179.9° |
| C17 | C18 | C19 | H18 | 180.0° | 180.0° |
| C17 | C18 | C19 | C20 | 0.1° | 0.3° |
| C18 | C17 | C16 | H16 | 179.9° | 179.9° |
| C17 | C18 | C19 | H19 | 179.9° | 180.0° |
| C18 | C19 | C20 | H19 | 180.0° | 179.7° |
| C19 | C18 | C17 | H17 | 179.8° | 180.0° |
| C18 | C19 | C20 | H20 | 179.9° | 179.7° |
| C20 | C19 | C18 | H18 | 179.9° | 179.7° |
| H1 | C1 | C5 | H5 | 0.1° | 0.2° |
| H4 | C4 | C5 | H5 | 0.1° | 0.1° |
| H7 | C7 | H7A | H7B | 120.0° | 120.0° |
| H16 | C16 | C17 | H17 | 0.1° | 0.0° |
| H17 | C17 | C18 | H18 | 0.2° | 0.0° |
| H18 | C18 | C19 | H19 | 0.1° | 0.1° |
| H19 | C19 | C20 | H20 | 0.1° | 0.0° |






