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SummaryGeometryRelated PDB entries

X3B

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O09C02sing1.43Å1.41Å
O01C02sing1.43Å1.40Å
C02C07sing1.53Å1.45Å
C02O03sing1.43Å1.41Å
C07C06sing1.53Å1.44Å
O03C04sing1.36Å1.47Å
C06O05sing1.43Å1.39Å
C04C08doub1.33Å1.32Å
C04O05sing1.36Å1.47Å
C06H1sing1.09Å1.10Å
C06H2sing1.09Å1.10Å
C07H3sing1.09Å1.10Å
C07H4sing1.09Å1.10Å
C08H5sing1.08Å1.08Å
C08H6sing1.08Å1.08Å
O01H7sing0.97Å0.95Å
O09H8sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O09C02O01108.8°109.7°
O09C02C07109.0°109.6°
O09C02O03109.6°109.6°
C02O09H8109.5°114.1°
O01C02C07109.1°109.6°
O01C02O03107.3°109.6°
C02O01H7109.5°114.0°
C07C02O03113.0°108.7°
C02C07C06111.2°108.9°
C02C07H3109.1°109.6°
C02C07H4109.1°109.6°
C02O03C04116.4°115.3°
C07C06O05113.7°108.7°
C07C06H1108.4°109.6°
C07C06H2108.4°109.7°
C06C07H3109.1°109.6°
C06C07H4109.0°109.5°
O03C04C08124.9°121.0°
O03C04O05110.0°117.9°
C06O05C04114.0°115.4°
O05C06H1108.4°109.6°
O05C06H2108.4°109.6°
C08C04O05125.1°121.1°
C04C08H5120.0°120.0°
C04C08H6120.0°120.0°
H1C06H2109.4°109.6°
H3C07H4109.4°109.7°
H5C08H6120.0°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O09C02O01C07118.7°120.4°
O09C02O01O03118.5°120.4°
O09C02C07O03122.1°119.8°
O09C02C07C06137.9°174.7°
O09C02O03C0483.4°170.8°
O09C02C07H317.6°54.9°
O09C02C07H4101.8°65.5°
O09C02O01H7180.0°59.6°
O01C02C07O03119.3°119.8°
O01C02C07C06103.5°64.8°
O01C02O03C04158.6°68.7°
O01C02C07H3136.2°175.4°
O01C02C07H416.8°55.0°
O01C02O09H8180.0°59.6°
C02C07C06H3120.3°119.8°
C02C07C06H4120.3°119.8°
C07C02O03C0438.3°51.0°
C02C07C06O0560.0°55.0°
C02C07C06H1179.4°174.8°
C02C07C06H260.6°64.9°
C02C07H3H4119.2°120.3°
C07C02O01H761.3°179.9°
C07C02O09H861.2°180.0°
O03C02C07C0615.8°55.0°
C02O03C04C08128.1°132.0°
C02O03C04O0551.3°48.0°
O03C02C07H3104.5°64.9°
O03C02C07H4136.1°174.8°
O03C02O01H761.5°60.7°
O03C02O09H862.9°60.8°
C07C06O05H1120.6°119.8°
C07C06O05H2120.7°119.9°
C07C06O05C0446.2°51.0°
C07C06H1H2118.1°120.4°
C06C07H3H4119.2°120.3°
O03C04O05C067.5°48.0°
O03C04C08O05179.4°180.0°
O03C04C08H50.0°180.0°
O03C04C08H6180.0°0.0°
C06O05C04C08172.0°132.0°
O05C06H1H2118.1°120.3°
O05C06C07H360.3°64.8°
O05C06C07H4179.7°174.8°
C04C08H5H6180.0°180.0°
C04O05C06H1166.8°170.8°
C04O05C06H274.5°68.9°
O05C04C08H5179.3°0.0°
O05C04C08H60.6°180.0°
H1C06C07H360.4°55.0°
H1C06C07H459.1°65.4°
H2C06C07H3179.1°175.3°
H2C06C07H459.6°54.9°

223532

PDB entries from 2024-08-07

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