Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

X2E

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N01C06doub1.32Å1.37ÅAromatic
N01C02sing1.32Å1.37ÅAromatic
N02C02sing1.39Å1.37Å
C02C03doub1.39Å1.41ÅAromatic
N02HN02sing0.97Å1.00Å
N02HN0Asing0.97Å1.00Å
C03C04sing1.38Å1.40ÅAromatic
C03H03sing1.08Å1.08Å
C05C04doub1.39Å1.40ÅAromatic
C04C07sing1.51Å1.52Å
C06C05sing1.38Å1.40ÅAromatic
C05H05sing1.08Å1.08Å
C08C06sing1.51Å1.51Å
C07H07sing1.09Å1.10Å
C07H07Asing1.09Å1.10Å
C07H07Bsing1.09Å1.10Å
C08C4'sing1.53Å1.54Å
C08H08sing1.09Å1.10Å
C08H08Asing1.09Å1.10Å
C10O09sing1.43Å1.41Å
O09C3'sing1.43Å1.43Å
C2'N1'sing1.49Å1.45Å
C5'N1'sing1.49Å1.47Å
N1'HN1'sing1.01Å1.00Å
C11C10sing1.53Å1.51Å
C10H10sing1.09Å1.10Å
C10H10Asing1.09Å1.10Å
C11N11sing1.47Å1.44Å
C11H11sing1.09Å1.10Å
C11H11Asing1.09Å1.10Å
C13N11sing1.47Å1.44Å
N11HN11sing1.01Å1.00Å
C15C13sing1.53Å1.52Å
C13C14sing1.53Å1.49Å
C13H13sing1.09Å1.10Å
C21C14sing1.51Å1.52Å
C14H14sing1.09Å1.10Å
C14H14Asing1.09Å1.10Å
C15H15sing1.09Å1.10Å
C15H15Asing1.09Å1.10Å
C15H15Bsing1.09Å1.10Å
C3'C2'sing1.54Å1.53Å
C2'H2'sing1.09Å1.10Å
C2'H2'Asing1.09Å1.10Å
C26C21doub1.38Å1.40ÅAromatic
C21C22sing1.38Å1.40ÅAromatic
C23C22doub1.38Å1.38ÅAromatic
C22H22sing1.08Å1.08Å
C24C23sing1.38Å1.40ÅAromatic
C23H23sing1.08Å1.08Å
C25C24doub1.38Å1.39ÅAromatic
C24H24sing1.08Å1.08Å
F25C25sing1.35Å1.36Å
C25C26sing1.39Å1.39ÅAromatic
C26H26sing1.08Å1.08Å
C3'C4'sing1.54Å1.52Å
C3'H3'sing1.09Å1.10Å
C4'C5'sing1.54Å1.53Å
C4'H4'sing1.09Å1.10Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C06N01C02121.0°121.6°
N01C06C05121.1°120.9°
N01C06C08120.5°119.6°
N01C02N02121.2°119.7°
N01C02C03118.9°120.6°
N02C02C03119.9°119.7°
C02N02HN02109.5°120.0°
C02N02HN0A109.4°120.0°
C02C03C04120.9°119.1°
C02C03H03119.6°120.4°
HN02N02HN0A109.5°120.0°
C04C03H03119.5°120.5°
C03C04C05118.7°118.5°
C03C04C07121.6°120.7°
C05C04C07119.6°120.8°
C04C05C06119.4°119.4°
C04C05H05120.3°120.3°
C04C07H07109.5°109.5°
C04C07H07A109.5°109.5°
C04C07H07B109.5°109.5°
C06C05H05120.3°120.4°
C05C06C08118.3°119.5°
C06C08C4'107.9°109.4°
C06C08H08110.0°109.5°
C06C08H08A110.0°109.5°
H07C07H07A109.5°109.4°
H07C07H07B109.4°109.4°
H07AC07H07B109.5°109.5°
C4'C08H08110.0°109.4°
C4'C08H08A110.0°109.5°
C08C4'C3'113.5°110.3°
C08C4'C5'113.4°110.3°
C08C4'H4'102.0°110.3°
H08C08H08A108.9°109.5°
C10O09C3'114.5°114.0°
O09C10C11103.2°109.5°
O09C10H10111.6°109.5°
O09C10H10A111.6°109.5°
O09C3'C2'109.7°110.3°
O09C3'C4'104.2°110.3°
O09C3'H3'111.5°110.4°
C2'N1'C5'112.3°104.3°
C2'N1'HN1'108.5°111.0°
N1'C2'C3'101.3°104.6°
N1'C2'H2'112.3°110.4°
N1'C2'H2'A112.3°110.4°
C5'N1'HN1'108.5°111.0°
N1'C5'C4'105.3°104.6°
N1'C5'H5'110.8°110.4°
N1'C5'H5'A110.9°110.4°
C11C10H10111.6°109.5°
C11C10H10A111.6°109.5°
C10C11N11109.4°109.5°
C10C11H11109.5°109.5°
C10C11H11A109.5°109.5°
H10C10H10A107.3°109.5°
N11C11H11109.5°109.4°
N11C11H11A109.5°109.5°
C11N11C13112.5°111.0°
C11N11HN11108.4°111.0°
H11C11H11A109.4°109.5°
C13N11HN11108.5°111.0°
N11C13C15111.7°109.5°
N11C13C14106.3°109.5°
N11C13H13112.0°109.5°
C15C13C14114.3°109.4°
C15C13H13103.4°109.5°
C13C15H15109.5°109.5°
C13C15H15A109.4°109.5°
C13C15H15B109.5°109.5°
C14C13H13109.2°109.5°
C13C14C21113.7°109.5°
C13C14H14108.1°109.5°
C13C14H14A108.1°109.5°
C21C14H14108.1°109.5°
C21C14H14A108.1°109.5°
C14C21C26121.5°119.9°
C14C21C22117.9°120.0°
H14C14H14A110.8°109.5°
H15C15H15A109.4°109.5°
H15C15H15B109.5°109.4°
H15AC15H15B109.5°109.4°
C3'C2'H2'112.3°110.4°
C3'C2'H2'A112.3°110.5°
C2'C3'C4'105.6°105.0°
C2'C3'H3'110.3°110.3°
H2'C2'H2'A106.6°110.3°
C26C21C22120.6°120.0°
C21C26C25118.2°119.9°
C21C26H26120.9°120.1°
C21C22C23122.2°120.1°
C21C22H22118.9°120.0°
C23C22H22118.9°120.0°
C22C23C24116.5°120.0°
C22C23H23121.7°120.0°
C24C23H23121.8°120.0°
C23C24C25122.5°120.0°
C23C24H24118.8°120.0°
C25C24H24118.8°120.0°
C24C25F25120.0°120.0°
C24C25C26120.1°119.9°
F25C25C26119.8°120.0°
C25C26H26120.9°120.0°
C4'C3'H3'115.2°110.4°
C3'C4'C5'102.9°105.1°
C3'C4'H4'112.7°110.3°
C5'C4'H4'112.8°110.4°
C4'C5'H5'110.9°110.4°
C4'C5'H5'A110.9°110.4°
H5'C5'H5'A108.1°110.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C06N01C02N02179.9°180.0°
C06N01C02C030.2°0.1°
N01C06C05C040.6°0.0°
N01C06C05C08178.7°180.0°
N01C06C05H05179.4°180.0°
N01C06C08C4'112.1°55.0°
N01C06C08H08127.9°65.0°
N01C06C08H08A7.9°175.0°
N01C02N02C03179.7°179.9°
N01C02N02HN020.0°0.1°
N01C02N02HN0A120.0°179.9°
N01C02C03C040.5°0.1°
N01C02C03H03179.5°179.9°
C02N01C06C050.2°0.1°
C02N01C06C08178.4°179.9°
C02N02HN02HN0A120.0°180.0°
N02C02C03C04179.8°179.9°
N02C02C03H030.2°0.1°
C03C02N02HN02179.7°179.9°
C03C02N02HN0A59.7°0.1°
C02C03C04H03180.0°180.0°
C02C03C04C050.9°0.0°
C02C03C04C07179.5°179.9°
C03C04C05C07178.6°180.0°
C03C04C05C060.9°0.0°
C03C04C05H05179.0°180.0°
C03C04C07H0789.2°90.0°
C03C04C07H07A150.7°150.1°
C03C04C07H07B30.7°30.0°
H03C03C04C05179.1°180.0°
H03C03C04C070.5°0.0°
C04C05C06H05180.0°180.0°
C04C05C06C08178.1°180.0°
C05C04C07H0789.3°90.0°
C05C04C07H07A30.7°29.9°
C05C04C07H07B150.7°150.0°
C07C04C05C06179.6°180.0°
C07C04C05H050.4°0.0°
C04C07H07H07A120.0°120.0°
C04C07H07H07B120.0°120.0°
C04C07H07AH07B120.0°120.1°
C05C06C08C4'66.5°125.0°
C05C06C08H0853.5°115.0°
C05C06C08H08A173.5°5.0°
H05C05C06C082.0°0.0°
C06C08C4'H08120.0°119.9°
C06C08C4'H08A120.0°120.0°
C06C08H08H08A120.7°120.0°
C06C08C4'C3'178.0°175.0°
C06C08C4'C5'65.1°69.4°
C06C08C4'H4'56.5°52.8°
H07C07H07AH07B120.0°119.9°
C4'C08H08H08A120.6°120.0°
C08C4'C3'O0941.1°0.0°
C08C4'C5'N1'142.6°142.7°
C08C4'C3'C2'156.6°118.9°
C08C4'C3'C5'123.0°118.9°
C08C4'C3'H4'115.3°122.1°
C08C4'C3'H3'81.4°122.2°
C08C4'C5'H4'115.3°122.2°
C08C4'C5'H5'97.4°98.5°
C08C4'C5'H5'A22.6°24.0°
H08C08C4'C3'58.0°55.0°
H08C08C4'C5'174.9°170.7°
H08C08C4'H4'63.5°67.1°
H08AC08C4'C3'62.0°65.0°
H08AC08C4'C5'54.9°50.6°
H08AC08C4'H4'176.5°172.9°
O09C10C11H10120.0°120.0°
O09C10C11H10A120.0°120.0°
O09C10H10H10A122.5°120.0°
O09C10C11N11102.3°65.0°
O09C10C11H11137.7°175.1°
O09C10C11H11A17.8°55.0°
C10O09C3'C2'73.2°91.5°
C10O09C3'C4'174.1°152.9°
C10O09C3'H3'49.2°30.7°
O09C3'C2'N1'77.4°142.7°
C3'O09C10C11176.7°180.0°
C3'O09C10H1056.7°60.0°
C3'O09C10H10A63.3°60.0°
O09C3'C2'C4'111.7°118.9°
O09C3'C2'H3'123.2°122.2°
O09C3'C2'H2'42.6°23.9°
O09C3'C2'H2'A162.6°98.4°
O09C3'C4'H3'122.5°122.2°
O09C3'C4'C5'81.9°118.9°
O09C3'C4'H4'156.4°122.1°
C2'N1'C5'HN1'120.0°119.6°
N1'C2'C3'H2'120.0°118.8°
N1'C2'C3'H2'A120.0°118.9°
N1'C2'H2'H2'A123.3°122.4°
N1'C2'C3'C4'34.3°23.8°
N1'C2'C3'H3'159.4°95.1°
C2'N1'C5'C4'2.0°39.5°
C2'N1'C5'H5'118.0°158.2°
C2'N1'C5'H5'A122.0°79.2°
C5'N1'C2'C3'22.4°39.5°
C5'N1'C2'H2'142.4°79.3°
C5'N1'C2'H2'A97.6°158.4°
N1'C5'C4'C3'19.6°23.9°
N1'C5'C4'H5'120.0°118.7°
N1'C5'C4'H5'A120.0°118.7°
N1'C5'C4'H4'102.1°95.1°
N1'C5'H5'H5'A121.7°122.4°
HN1'N1'C2'C3'142.4°80.1°
HN1'N1'C2'H2'97.7°161.1°
HN1'N1'C2'H2'A22.4°38.8°
HN1'N1'C5'C4'122.0°80.1°
HN1'N1'C5'H5'2.0°38.7°
HN1'N1'C5'H5'A118.1°161.2°
C11C10H10H10A122.6°120.0°
C10C11N11H11120.0°120.0°
C10C11N11H11A120.0°120.0°
C10C11H11H11A120.0°120.1°
C10C11N11C13160.8°180.0°
C10C11N11HN1179.2°56.1°
H10C10C11N1117.7°55.0°
H10C10C11H11102.3°64.9°
H10C10C11H11A137.7°175.0°
H10AC10C11N11137.8°175.0°
H10AC10C11H1117.8°55.1°
H10AC10C11H11A102.2°65.0°
N11C11H11H11A120.1°120.0°
C11N11C13HN11120.0°123.9°
C11N11C13C1594.1°85.0°
C11N11C13C14140.6°155.0°
C11N11C13H1321.4°34.9°
H11C11N11C1340.8°60.1°
H11C11N11HN11160.8°176.0°
H11AC11N11C1379.2°60.0°
H11AC11N11HN1140.8°64.0°
N11C13C15C14120.7°120.0°
N11C13C15H13120.6°120.0°
N11C13C14H13120.9°120.0°
N11C13C14C21166.5°65.0°
N11C13C14H1473.5°55.0°
N11C13C14H14A46.5°175.0°
N11C13C15H15180.0°180.0°
N11C13C15H15A60.0°60.0°
N11C13C15H15B60.0°60.0°
HN11N11C13C15145.9°151.0°
HN11N11C13C1420.6°31.1°
HN11N11C13H1398.6°89.0°
C15C13C14H13115.3°120.0°
C15C13C14C2142.8°175.0°
C15C13C14H14162.8°65.0°
C15C13C14H14A77.2°55.0°
C13C15H15H15A120.0°120.0°
C13C15H15H15B120.0°120.0°
C13C15H15AH15B120.0°120.0°
C13C14C21H14120.0°120.0°
C13C14C21H14A120.0°120.0°
C13C14H14H14A118.3°120.0°
C14C13C15H1559.3°60.0°
C14C13C15H15A60.7°60.0°
C14C13C15H15B179.3°180.0°
C13C14C21C2677.6°90.3°
C13C14C21C22105.3°90.0°
H13C13C14C2172.5°55.0°
H13C13C14H1447.5°175.0°
H13C13C14H14A167.4°65.0°
H13C13C15H1559.4°60.0°
H13C13C15H15A179.4°180.0°
H13C13C15H15B60.6°60.0°
C21C14H14H14A118.3°120.0°
C14C21C26C22177.0°179.7°
C14C21C22C23176.3°180.0°
C14C21C22H223.7°0.1°
C14C21C26C25177.3°179.7°
C14C21C26H262.7°0.3°
H14C14C21C2642.4°149.7°
H14C14C21C22134.7°30.0°
H14AC14C21C26162.4°29.7°
H14AC14C21C2214.7°150.0°
H15C15H15AH15B120.0°119.9°
C3'C2'H2'H2'A123.3°122.4°
C2'C3'C4'H3'121.9°118.9°
C2'C3'C4'C5'33.7°0.0°
C2'C3'C4'H4'88.1°119.0°
H2'C2'C3'C4'154.3°95.0°
H2'C2'C3'H3'80.6°146.1°
H2'AC2'C3'C4'85.6°142.7°
H2'AC2'C3'H3'39.4°23.8°
C26C21C22C230.8°0.3°
C26C21C22H22179.2°179.8°
C21C26C25C241.5°0.6°
C21C26C25F25179.7°179.7°
C21C26C25H26180.0°179.4°
C21C22C23H22180.0°179.9°
C21C22C23C240.6°0.0°
C21C22C23H23179.4°180.0°
C22C21C26C250.2°0.6°
C22C21C26H26179.8°180.0°
C22C23C24H23180.0°180.0°
C22C23C24C250.7°0.0°
C22C23C24H24179.3°179.9°
H22C22C23C24179.4°179.9°
H22C22C23H230.6°0.0°
C23C24C25H24180.0°179.9°
C23C24C25F25179.9°180.0°
C23C24C25C261.7°0.3°
H23C23C24C25179.3°180.0°
H23C23C24H240.7°0.0°
C24C25F25C26178.2°179.7°
C24C25C26H26178.5°180.0°
H24C24C25F250.1°0.1°
H24C24C25C26178.3°179.8°
F25C25C26H260.3°0.3°
C3'C4'C5'H4'121.7°118.9°
C3'C4'C5'H5'139.6°142.6°
C3'C4'C5'H5'A100.4°94.9°
H3'C3'C4'C5'155.6°118.9°
H3'C3'C4'H4'33.9°0.1°
C4'C5'H5'H5'A121.7°122.4°
H4'C4'C5'H5'17.9°23.7°
H4'C4'C5'H5'A137.9°146.2°

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon