Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

X2D

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C06N01doub1.32Å1.38ÅAromatic
N01C02sing1.32Å1.36ÅAromatic
N02C02sing1.39Å1.38Å
C02C03doub1.39Å1.40ÅAromatic
N02HN02sing0.97Å1.00Å
N02HN0Asing0.97Å1.00Å
C03C04sing1.38Å1.40ÅAromatic
C03H03sing1.08Å1.08Å
C05C04doub1.39Å1.40ÅAromatic
C04C07sing1.51Å1.53Å
C06C05sing1.38Å1.39ÅAromatic
C05H05sing1.08Å1.08Å
C08C06sing1.51Å1.53Å
C07H07sing1.09Å1.10Å
C07H07Asing1.09Å1.10Å
C07H07Bsing1.09Å1.10Å
C08C3'sing1.53Å1.53Å
C08H08sing1.09Å1.10Å
C08H08Asing1.09Å1.10Å
C10O09sing1.43Å1.43Å
O09C4'sing1.43Å1.43Å
C5'N1'sing1.49Å1.46Å
C2'N1'sing1.49Å1.46Å
N1'HN1'sing1.01Å1.00Å
C11C10sing1.53Å1.51Å
C10H10sing1.09Å1.10Å
C10H10Asing1.09Å1.10Å
C11N12sing1.47Å1.46Å
C11H11sing1.09Å1.10Å
C11H11Asing1.09Å1.10Å
C13N12sing1.47Å1.45Å
N12HN12sing1.01Å1.00Å
C15C13sing1.53Å1.53Å
C13C14sing1.53Å1.51Å
C13H13sing1.09Å1.10Å
C15C14sing1.53Å1.54Å
C21C14sing1.51Å1.49Å
C14H14sing1.09Å1.10Å
C15H15sing1.09Å1.10Å
C15H15Asing1.09Å1.10Å
C3'C2'sing1.54Å1.55Å
C2'H2'sing1.09Å1.10Å
C2'H2'Asing1.09Å1.10Å
C22C21doub1.38Å1.39ÅAromatic
C21C26sing1.38Å1.40ÅAromatic
C23C22sing1.38Å1.39ÅAromatic
C22H22sing1.08Å1.08Å
CL23C23sing1.74Å1.80Å
C23C24doub1.38Å1.40ÅAromatic
C24C25sing1.38Å1.41ÅAromatic
C24H24sing1.08Å1.08Å
C25C26doub1.38Å1.39ÅAromatic
C25H25sing1.08Å1.08Å
C26H26sing1.08Å1.08Å
C4'C3'sing1.54Å1.53Å
C3'H3'sing1.09Å1.10Å
C4'C5'sing1.54Å1.53Å
C4'H4'sing1.09Å1.10Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C06N01C02122.0°121.6°
N01C06C05120.1°120.9°
N01C06C08121.6°119.5°
N01C02N02121.4°119.7°
N01C02C03118.7°120.6°
N02C02C03119.9°119.7°
C02N02HN02109.5°120.0°
C02N02HN0A109.5°120.0°
C02C03C04120.5°119.1°
C02C03H03119.8°120.4°
HN02N02HN0A109.5°120.0°
C04C03H03119.8°120.5°
C03C04C05119.2°118.5°
C03C04C07121.4°120.7°
C05C04C07119.3°120.8°
C04C05C06119.5°119.3°
C04C05H05120.3°120.3°
C04C07H07109.5°109.5°
C04C07H07A109.5°109.5°
C04C07H07B109.4°109.5°
C06C05H05120.3°120.4°
C05C06C08118.3°119.6°
C06C08C3'108.7°109.5°
C06C08H08109.7°109.5°
C06C08H08A109.7°109.5°
H07C07H07A109.4°109.5°
H07C07H07B109.5°109.4°
H07AC07H07B109.5°109.4°
C3'C08H08109.7°109.4°
C3'C08H08A109.8°109.5°
C08C3'C2'109.9°110.3°
C08C3'C4'114.5°110.4°
C08C3'H3'104.2°110.3°
H08C08H08A109.2°109.5°
C10O09C4'113.5°114.0°
O09C10C11106.1°109.4°
O09C10H10110.6°109.5°
O09C10H10A110.6°109.5°
O09C4'C3'109.2°110.3°
O09C4'C5'105.2°110.3°
O09C4'H4'110.5°110.3°
C5'N1'C2'110.2°104.2°
C5'N1'HN1'109.2°111.0°
N1'C5'C4'102.8°104.6°
N1'C5'H5'111.8°110.4°
N1'C5'H5'A111.8°110.4°
C2'N1'HN1'109.2°111.0°
N1'C2'C3'105.5°104.6°
N1'C2'H2'110.8°110.4°
N1'C2'H2'A110.8°110.4°
C11C10H10110.6°109.4°
C11C10H10A110.6°109.5°
C10C11N12110.1°109.5°
C10C11H11109.3°109.5°
C10C11H11A109.3°109.4°
H10C10H10A108.3°109.5°
N12C11H11109.2°109.5°
N12C11H11A109.2°109.5°
C11N12C13116.7°111.0°
C11N12HN12107.1°111.0°
H11C11H11A109.7°109.5°
C13N12HN12107.1°111.0°
N12C13C15103.5°117.5°
N12C13C14109.5°117.5°
N12C13H13104.9°115.5°
C15C13C1460.6°60.0°
C15C13H13138.1°117.5°
C13C15C1459.1°60.0°
C13C15H15131.4°117.5°
C13C15H15A131.4°117.5°
C14C13H13133.3°117.5°
C13C14C1560.2°60.0°
C13C14C21116.9°117.5°
C13C14H14131.9°117.5°
C15C14C21108.7°117.5°
C15C14H14138.7°117.5°
C14C15H15131.4°117.5°
C14C15H15A131.4°117.5°
C21C14H1498.3°115.6°
C14C21C22121.0°120.0°
C14C21C26118.8°119.9°
H15C15H15A81.0°115.5°
C3'C2'H2'110.8°110.4°
C3'C2'H2'A110.8°110.5°
C2'C3'C4'104.1°105.0°
C2'C3'H3'114.6°110.3°
H2'C2'H2'A108.1°110.4°
C22C21C26120.2°120.1°
C21C22C23117.9°120.0°
C21C22H22121.1°120.1°
C21C26C25122.0°120.0°
C21C26H26119.0°120.0°
C23C22H22121.1°120.0°
C22C23CL23115.9°120.0°
C22C23C24122.3°120.0°
CL23C23C24121.6°120.0°
C23C24C25120.0°120.0°
C23C24H24120.0°120.0°
C25C24H24120.0°120.0°
C24C25C26117.4°120.0°
C24C25H25121.3°119.9°
C26C25H25121.3°120.0°
C25C26H26119.0°120.0°
C4'C3'H3'110.0°110.4°
C3'C4'C5'103.1°105.1°
C3'C4'H4'112.4°110.4°
C5'C4'H4'116.0°110.4°
C4'C5'H5'111.8°110.4°
C4'C5'H5'A111.8°110.4°
H5'C5'H5'A107.1°110.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C06N01C02N02178.8°180.0°
C06N01C02C030.8°0.1°
N01C06C05C040.4°0.0°
N01C06C05C08179.5°179.9°
N01C06C05H05179.6°180.0°
N01C06C08C3'107.2°54.9°
N01C06C08H08132.8°65.0°
N01C06C08H08A12.8°175.0°
N01C02N02C03179.6°180.0°
N01C02N02HN020.0°0.0°
N01C02N02HN0A120.0°180.0°
N01C02C03C040.2°0.1°
N01C02C03H03179.8°180.0°
C02N01C06C050.7°0.1°
C02N01C06C08179.8°180.0°
C02N02HN02HN0A120.0°180.0°
N02C02C03C04179.9°180.0°
N02C02C03H030.1°0.0°
C03C02N02HN02179.6°180.0°
C03C02N02HN0A59.6°0.0°
C02C03C04H03180.0°179.9°
C02C03C04C051.3°0.0°
C02C03C04C07179.5°180.0°
C03C04C05C07178.2°180.0°
C03C04C05C061.4°0.0°
C03C04C05H05178.6°180.0°
C03C04C07H0789.1°90.0°
C03C04C07H07A151.0°150.0°
C03C04C07H07B31.0°30.0°
H03C03C04C05178.7°180.0°
H03C03C04C070.5°0.0°
C04C05C06H05180.0°180.0°
C04C05C06C08179.1°180.0°
C05C04C07H0789.1°90.0°
C05C04C07H07A30.9°30.0°
C05C04C07H07B150.8°150.0°
C07C04C05C06179.6°180.0°
C07C04C05H050.4°0.0°
C04C07H07H07A120.0°120.0°
C04C07H07H07B120.0°120.0°
C04C07H07AH07B120.0°120.0°
C05C06C08C3'72.3°125.0°
C05C06C08H0847.7°115.1°
C05C06C08H08A167.7°4.9°
H05C05C06C080.9°0.1°
C06C08C3'H08120.0°120.0°
C06C08C3'H08A120.0°120.0°
C06C08H08H08A120.3°120.0°
C06C08C3'C2'57.7°66.5°
C06C08C3'C4'174.4°177.9°
C06C08C3'H3'65.5°55.7°
H07C07H07AH07B120.0°119.9°
C3'C08H08H08A120.3°120.0°
C08C3'C4'O0938.8°0.0°
C08C3'C2'N1'134.8°142.8°
C08C3'C2'C4'123.0°118.9°
C08C3'C2'H3'116.9°122.1°
C08C3'C2'H2'105.2°98.4°
C08C3'C2'H2'A14.8°23.9°
C08C3'C4'H3'116.9°122.2°
C08C3'C4'C5'150.3°118.9°
C08C3'C4'H4'84.1°122.1°
H08C08C3'C2'177.7°173.5°
H08C08C3'C4'65.6°57.9°
H08C08C3'H3'54.5°64.3°
H08AC08C3'C2'62.3°53.5°
H08AC08C3'C4'54.4°62.1°
H08AC08C3'H3'174.5°175.7°
O09C10C11H10120.0°119.9°
O09C10C11H10A120.0°120.0°
O09C10H10H10A121.4°120.1°
O09C10C11N1287.4°65.0°
O09C10C11H11152.6°175.0°
O09C10C11H11A32.6°55.0°
C10O09C4'C3'160.1°150.0°
C10O09C4'C5'89.8°94.4°
C10O09C4'H4'36.1°27.8°
O09C4'C5'N1'76.6°142.7°
C4'O09C10C11179.7°180.0°
C4'O09C10H1059.7°60.1°
C4'O09C10H10A60.3°60.0°
O09C4'C3'C2'81.1°118.9°
O09C4'C3'C5'111.5°118.9°
O09C4'C3'H4'123.0°122.1°
O09C4'C3'H3'155.7°122.2°
O09C4'C5'H4'122.4°122.1°
O09C4'C5'H5'43.5°23.9°
O09C4'C5'H5'A163.5°98.4°
C5'N1'C2'HN1'120.0°119.5°
C5'N1'C2'C3'12.7°39.5°
C5'N1'C2'H2'107.3°158.2°
C5'N1'C2'H2'A132.6°79.4°
N1'C5'C4'C3'37.8°23.9°
N1'C5'C4'H5'120.0°118.8°
N1'C5'C4'H5'A120.0°118.8°
N1'C5'C4'H4'161.1°95.1°
N1'C5'H5'H5'A122.7°122.4°
N1'C2'C3'H2'120.0°118.8°
N1'C2'C3'H2'A120.0°118.9°
N1'C2'H2'H2'A121.6°122.4°
N1'C2'C3'C4'11.8°23.8°
N1'C2'C3'H3'108.4°95.1°
C2'N1'C5'C4'31.9°39.5°
C2'N1'C5'H5'151.9°79.3°
C2'N1'C5'H5'A88.1°158.3°
HN1'N1'C2'C3'132.6°80.1°
HN1'N1'C2'H2'12.6°38.7°
HN1'N1'C2'H2'A107.4°161.1°
HN1'N1'C5'C4'151.9°80.1°
HN1'N1'C5'H5'88.1°161.1°
HN1'N1'C5'H5'A31.9°38.8°
C11C10H10H10A121.4°120.0°
C10C11N12H11120.0°120.0°
C10C11N12H11A120.0°120.0°
C10C11H11H11A119.8°120.0°
C10C11N12C13172.3°180.0°
C10C11N12HN1252.3°56.0°
H10C10C11N1232.6°55.0°
H10C10C11H1187.4°65.0°
H10C10C11H11A152.6°175.0°
H10AC10C11N12152.6°175.0°
H10AC10C11H1132.6°55.0°
H10AC10C11H11A87.4°65.0°
N12C11H11H11A119.7°120.1°
C11N12C13HN12120.0°124.0°
C11N12C13C1578.5°136.3°
C11N12C13C14141.8°155.0°
C11N12C13H1370.4°9.3°
H11C11N12C1367.7°60.0°
H11C11N12HN12172.3°176.0°
H11AC11N12C1352.3°60.1°
H11AC11N12HN1267.7°63.9°
N12C13C15C14105.0°107.5°
N12C13C15H13131.6°145.0°
N12C13C14H13135.0°145.0°
N12C13C14C21168.0°145.0°
N12C13C14H1435.7°0.1°
N12C13C15H1515.0°0.0°
N12C13C15H15A135.0°145.0°
HN12N12C13C15161.5°99.7°
HN12N12C13C1498.2°31.0°
HN12N12C13H1349.6°114.7°
C15C13C14H13130.1°107.5°
C13C15C14H15120.0°107.5°
C13C15C14H15A120.0°107.5°
C15C13C14C2197.2°107.5°
C13C15C14H14121.0°107.5°
C13C15H15H15A138.9°145.7°
C13C14C21H14146.2°145.7°
C13C14C21C2228.2°59.7°
C13C14C21C26154.3°120.0°
H13C13C14C2132.9°0.0°
H13C13C14H1499.4°145.0°
H13C13C15H15116.6°145.0°
H13C13C15H15A3.4°0.1°
C15C14C21H14148.4°145.7°
C14C15H15H15A138.9°145.6°
C15C14C21C2237.2°8.9°
C15C14C21C26140.2°171.4°
C21C14C15H15129.1°145.0°
C21C14C15H15A9.2°0.1°
C14C21C22C26177.4°179.7°
C14C21C22C23179.9°179.9°
C14C21C22H220.1°0.1°
C14C21C26C25179.4°179.7°
C14C21C26H260.6°0.0°
H14C14C15H151.0°0.1°
H14C14C15H15A119.0°145.0°
H14C14C21C22174.4°154.6°
H14C14C21C268.1°25.7°
C3'C2'H2'H2'A121.6°122.4°
C2'C3'C4'H3'123.2°118.9°
C2'C3'C4'C5'30.3°0.0°
C2'C3'C4'H4'155.9°119.0°
H2'C2'C3'C4'131.8°142.6°
H2'C2'C3'H3'11.6°23.7°
H2'AC2'C3'C4'108.2°95.0°
H2'AC2'C3'H3'131.6°146.0°
C21C22C23H22180.0°179.9°
C21C22C23CL23179.3°180.0°
C21C22C23C243.0°0.1°
C22C21C26C252.0°0.6°
C22C21C26H26178.0°179.7°
C26C21C22C232.5°0.3°
C26C21C22H22177.5°179.8°
C21C26C25C241.8°0.6°
C21C26C25H26180.0°179.7°
C21C26C25H25178.2°179.7°
C22C23CL23C24176.4°179.9°
C22C23C24C252.9°0.0°
C22C23C24H24177.1°180.0°
H22C22C23CL230.7°0.1°
H22C22C23C24177.0°180.0°
CL23C23C24C25179.0°180.0°
CL23C23C24H240.9°0.1°
C23C24C25H24180.0°180.0°
C23C24C25C262.2°0.3°
C23C24C25H25177.8°180.0°
C24C25C26H25180.0°179.7°
C24C25C26H26178.2°179.7°
H24C24C25C26177.8°179.8°
H24C24C25H252.2°0.0°
H25C25C26H261.8°0.0°
C3'C4'C5'H4'123.2°119.0°
C3'C4'C5'H5'157.9°94.9°
C3'C4'C5'H5'A82.2°142.7°
H3'C3'C4'C5'92.8°118.9°
H3'C3'C4'H4'32.8°0.1°
C4'C5'H5'H5'A122.7°122.4°
H4'C4'C5'H5'78.9°146.1°
H4'C4'C5'H5'A41.1°23.7°

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon