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Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
NC8sing1.35Å1.39ÅAromatic
NC9doub1.28Å1.32ÅAromatic
C1C2doub1.39Å1.41ÅAromatic
C1C8sing1.40Å1.39ÅAromatic
C1Ssing1.76Å1.73ÅAromatic
O1C3sing1.36Å1.38Å
O1C4sing1.43Å1.42Å
C2C3sing1.38Å1.41ÅAromatic
O2C5sing1.36Å1.37Å
O2C6sing1.43Å1.43Å
C3C5doub1.40Å1.41ÅAromatic
C5C7sing1.38Å1.41ÅAromatic
C7C8doub1.41Å1.41ÅAromatic
C9C10sing1.51Å1.49Å
C9Ssing1.71Å1.72ÅAromatic
C2H2sing1.08Å1.08Å
C4H41Csing1.09Å1.10Å
C4H42Csing1.09Å1.10Å
C4H43Csing1.09Å1.10Å
C6H61Csing1.09Å1.10Å
C6H62Csing1.09Å1.10Å
C6H63Csing1.09Å1.10Å
C7H7sing1.08Å1.08Å
C10H101sing1.09Å1.10Å
C10H102sing1.09Å1.10Å
C10H103sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C8NC9110.4°117.9°
NC8C1115.2°111.8°
NC8C7126.0°129.5°
NC9C10124.2°124.3°
NC9S115.3°111.5°
C2C1C8121.0°120.5°
C2C1S130.1°131.5°
C1C2C3119.9°120.2°
C1C2H2120.0°119.9°
C8C1S108.9°108.0°
C1C8C7118.8°118.6°
C1SC990.1°90.9°
C3O1C4118.7°117.0°
O1C3C2112.0°120.1°
O1C3C5128.2°120.0°
O1C4H41C109.5°109.5°
O1C4H42C109.5°109.5°
O1C4H43C109.4°109.4°
C2C3C5119.9°119.9°
C3C2H2120.0°119.9°
C5O2C6118.3°117.0°
O2C5C3118.4°119.8°
O2C5C7122.5°119.8°
O2C6H61C109.5°109.4°
O2C6H62C109.5°109.5°
O2C6H63C109.4°109.5°
C3C5C7119.1°120.4°
C5C7C8121.3°120.4°
C5C7H7119.3°119.8°
C8C7H7119.4°119.9°
C10C9S120.5°124.2°
C9C10H101109.5°109.4°
C9C10H102109.5°109.5°
C9C10H103109.4°109.5°
H41CC4H42C109.4°109.5°
H41CC4H43C109.5°109.4°
H42CC4H43C109.5°109.4°
H61CC6H62C109.5°109.5°
H61CC6H63C109.5°109.4°
H62CC6H63C109.5°109.5°
H101C10H102109.5°109.5°
H101C10H103109.5°109.5°
H102C10H103109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
NC8C1C2179.9°180.0°
NC8C1C7179.8°180.0°
NC8C1S0.1°0.0°
NC8C7C5179.8°180.0°
C8NC9C10178.9°180.0°
C8NC9S0.1°0.0°
NC8C7H70.2°0.0°
C9NC8C10.1°0.0°
NC9SC10.1°0.0°
C9NC8C7179.9°180.0°
NC9C10S179.0°179.9°
NC9C10H101154.5°90.0°
NC9C10H10285.5°150.0°
NC9C10H10334.5°30.0°
C2C1C8S180.0°180.0°
C1C2C3O1178.9°180.0°
C1C2C3H2180.0°179.9°
C1C2C3C50.3°0.1°
C2C1C8C70.2°0.0°
C2C1SC9180.0°179.9°
C8C1C2C30.3°0.1°
C1C8C7C50.1°0.0°
C8C1SC90.0°0.0°
C8C1C2H2179.7°180.0°
C1C8C7H7180.0°180.0°
SC1C2C3179.7°180.0°
SC1C8C7179.8°180.0°
C1SC9C10179.0°180.0°
SC1C2H20.3°0.1°
O1C3C2C5178.7°180.0°
O1C3C5O22.9°0.0°
O1C3C5C7178.6°180.0°
O1C3C2H21.1°0.0°
C3O1C4H41C151.6°180.0°
C3O1C4H42C88.4°59.9°
C3O1C4H43C31.6°60.0°
C4O1C3C216.2°0.1°
C4O1C3C5162.3°180.0°
O1C4H41CH42C120.0°120.1°
O1C4H41CH43C120.0°120.0°
O1C4H42CH43C120.0°119.9°
C2C3C5O2178.7°180.0°
C2C3C5C70.2°0.0°
O2C5C3C7178.5°180.0°
O2C5C7C8178.5°180.0°
C5O2C6H61C78.6°179.9°
C5O2C6H62C41.4°60.0°
C5O2C6H63C161.4°60.0°
O2C5C7H71.5°0.0°
C6O2C5C3169.0°180.0°
C6O2C5C79.5°0.0°
O2C6H61CH62C120.0°120.0°
O2C6H61CH63C120.0°120.0°
O2C6H62CH63C120.0°120.0°
C3C5C7C80.1°0.0°
C5C3C2H2179.7°180.0°
C3C5C7H7180.0°180.0°
C5C7C8H7180.0°180.0°
C9C10H101H102120.0°120.0°
C9C10H101H103120.0°120.0°
C9C10H102H103120.0°120.0°
SC9C10H10124.5°90.1°
SC9C10H10295.5°29.9°
SC9C10H103144.5°150.0°
H41CC4H42CH43C120.0°120.0°
H61CC6H62CH63C120.0°120.0°
H101C10H102H103120.0°120.0°

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PDB entries from 2024-07-17

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