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SummaryGeometryRelated PDB entries

X0O

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O11P09doub1.48Å1.51Å
O10P09sing1.61Å1.51Å
O12P09sing1.61Å1.51Å
P09O08sing1.61Å1.65Å
O08P05sing1.61Å1.65Å
O02P01doub1.48Å1.51Å
O03P01sing1.61Å1.51Å
O07P05doub1.48Å1.51Å
O04P01sing1.61Å1.65Å
O04P05sing1.61Å1.65Å
P01O13sing1.61Å1.65Å
P05O06sing1.61Å1.51Å
O13C14sing1.43Å1.40Å
C14C15sing1.53Å1.39Å
C15O28sing1.44Å1.51Å
C15C16sing1.55Å1.59Å
O28C18sing1.44Å1.28Å
C24N23sing1.46Å1.45Å
C25N23sing1.36Å1.30Å
C25C19doub1.35Å1.49Å
C16O30sing1.43Å1.51Å
C16C17sing1.55Å1.24Å
C18C19sing1.51Å1.51Å
C18C17sing1.54Å1.67Å
N23C22sing1.35Å1.63Å
C19C20sing1.41Å1.61Å
C17O29sing1.43Å1.48Å
C22O26doub1.22Å1.18Å
C22N21sing1.33Å1.29Å
C20N21doub1.33Å1.46Å
C20N27sing1.38Å1.45Å
C14H1sing1.09Å1.10Å
C14H2sing1.09Å1.10Å
C15H3sing1.09Å1.10Å
C16H4sing1.09Å1.10Å
C17H5sing1.09Å1.10Å
C18H6sing1.09Å1.10Å
C24H7sing1.09Å1.10Å
C24H8sing1.09Å1.10Å
C24H9sing1.09Å1.10Å
C25H10sing1.08Å1.08Å
N27H11sing0.97Å1.00Å
N27H12sing0.97Å1.00Å
O03H13sing0.97Å0.95Å
O06H14sing0.97Å0.95Å
O10H15sing0.97Å0.95Å
O12H16sing0.97Å0.95Å
O29H17sing0.97Å0.95Å
O30H18sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O11P09O10109.6°109.5°
O11P09O12109.2°109.4°
O11P09O08109.8°109.5°
O10P09O12109.4°109.5°
O10P09O08109.7°109.5°
P09O10H15109.5°114.0°
O12P09O08109.1°109.5°
P09O12H16109.5°114.0°
P09O08P05124.3°134.0°
O08P05O07109.4°109.5°
O08P05O04109.6°109.5°
O08P05O06109.1°109.4°
O02P01O03109.2°109.5°
O02P01O04109.0°109.5°
O02P01O13108.9°109.4°
O03P01O04109.7°109.5°
O03P01O13109.9°109.5°
P01O03H13109.5°114.0°
O07P05O04110.1°109.5°
O07P05O06109.3°109.5°
P01O04P05124.8°134.0°
O04P01O13110.1°109.5°
O04P05O06109.5°109.5°
P01O13C14119.3°123.0°
P05O06H14109.5°114.1°
O13C14C15109.7°109.5°
O13C14H1109.4°109.4°
O13C14H2109.4°109.5°
C14C15O28110.4°110.6°
C14C15C16110.4°110.6°
C15C14H1109.4°109.4°
C15C14H2109.4°109.5°
C14C15H3112.0°110.6°
O28C15C16104.5°103.5°
C15O28C18106.1°107.0°
O28C15H3110.1°110.6°
C15C16O30110.1°110.9°
C15C16C17106.1°102.1°
C16C15H3109.1°110.8°
C15C16H4108.1°110.9°
O28C18C19109.1°109.9°
O28C18C17108.3°107.3°
O28C18H6113.2°109.9°
C24N23C25114.4°119.9°
C24N23C22122.1°119.8°
N23C24H7109.5°109.5°
N23C24H8109.5°109.5°
N23C24H9109.5°109.5°
N23C25C19116.4°119.3°
C25N23C22123.5°120.4°
N23C25H10121.8°120.3°
C25C19C18120.1°120.5°
C25C19C20119.3°119.0°
C19C25H10121.8°120.4°
O30C16C17110.1°110.8°
O30C16H4109.0°110.8°
C16O30H18109.5°114.0°
C16C17C18108.2°104.2°
C16C17O29110.1°110.5°
C17C16H4113.5°110.9°
C16C17H5112.9°110.5°
C19C18C17109.2°109.9°
C18C19C20120.7°120.5°
C19C18H6109.4°109.9°
C18C17O29110.0°110.5°
C18C17H5106.8°110.5°
C17C18H6107.5°109.9°
N23C22O26122.2°119.5°
N23C22N21123.6°121.0°
C19C20N21119.4°119.7°
C19C20N27120.5°120.2°
O29C17H5108.9°110.5°
C17O29H17109.5°113.9°
O26C22N21114.2°119.4°
C22N21C20117.9°120.7°
N21C20N27120.1°120.1°
C20N27H11120.0°120.0°
C20N27H12120.0°120.0°
H1C14H2109.5°109.4°
H7C24H8109.5°109.5°
H7C24H9109.5°109.4°
H8C24H9109.5°109.5°
H11N27H12120.0°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O11P09O10O12119.7°119.9°
O11P09O10O08120.6°120.0°
O11P09O12O08120.0°120.0°
O11P09O08P0597.7°45.0°
O11P09O10H150.0°180.0°
O11P09O12H160.0°60.0°
O10P09O12O08120.0°120.0°
O10P09O08P0522.8°75.0°
O10P09O12H16120.0°59.9°
O12P09O08P05142.6°165.0°
O12P09O10H15119.7°60.0°
P09O08P05O0755.1°45.0°
P09O08P05O0465.7°165.0°
P09O08P05O06174.5°75.0°
O08P09O10H15120.6°60.0°
O08P09O12H16120.0°180.0°
O08P05O07O04120.4°120.0°
O08P05O07O06119.4°120.0°
O08P05O04P01151.3°160.0°
O08P05O04O06119.6°119.9°
O08P05O06H14119.6°60.0°
O02P01O03O04119.4°120.0°
O02P01O03O13119.4°119.9°
O02P01O04O13119.4°119.9°
O02P01O04P05161.1°45.0°
O02P01O13C14175.9°55.0°
O02P01O03H130.0°180.0°
O03P01O04O13121.1°120.0°
O03P01O04P0541.6°75.0°
O03P01O13C1456.4°64.9°
O07P05O04P0131.0°40.0°
O07P05O04O06120.1°120.0°
O07P05O06H140.0°179.9°
P01O04P05O0689.1°80.0°
O04P01O13C1464.5°175.0°
O04P01O03H13119.4°59.9°
P05O04P01O1379.4°165.0°
O04P05O06H14120.5°59.9°
P01O13C14C15139.9°180.0°
P01O13C14H1100.1°60.1°
P01O13C14H219.8°59.9°
O13P01O03H13119.4°60.1°
O13C14C15H1120.0°120.0°
O13C14C15H2120.0°120.1°
O13C14C15O2830.4°66.5°
O13C14C15C16145.4°179.5°
O13C14H1H2119.9°120.0°
O13C14C15H392.8°56.4°
C14C15O28C16118.7°118.5°
C14C15O28H3124.2°122.8°
C14C15C16H3123.5°123.0°
C14C15O28C18144.1°158.5°
C14C15C16O3097.3°86.4°
C14C15C16C17143.7°155.5°
C15C14H1H2119.9°120.0°
C14C15C16H421.7°37.3°
O28C15C16H3117.8°118.6°
O28C15C16O30144.0°155.2°
O28C15C16C1725.0°37.1°
C15O28C18C19135.9°145.9°
C15O28C18C1717.2°26.5°
O28C15C14H189.6°173.6°
O28C15C14H2150.4°53.6°
O28C15C16H497.0°81.2°
C15O28C18H6102.0°93.0°
C16C15O28C1825.5°40.1°
C15C16O30C17116.5°112.7°
C15C16O30H4118.4°123.7°
C15C16C17H4118.5°118.2°
C15C16C17C1814.7°20.9°
C15C16C17O29105.4°97.7°
C16C15C14H125.4°59.5°
C16C15C14H294.5°60.5°
C15C16C17H5132.6°139.7°
C15C16O30H18180.0°180.0°
O28C18C19C254.4°127.4°
O28C18C17C161.1°2.0°
O28C18C19C17118.2°117.9°
O28C18C19H6124.3°121.1°
O28C18C17H6122.7°119.5°
O28C18C19C20175.8°52.8°
O28C18C17O29121.3°120.7°
C18O28C15H391.6°78.7°
O28C18C17H5120.6°116.7°
C24N23C25C22179.7°180.0°
C24N23C25C19180.0°180.0°
C24N23C22O260.3°0.0°
C24N23C22N21180.0°179.8°
N23C24H7H8120.0°120.1°
N23C24H7H9120.0°120.0°
N23C24H8H9120.0°120.0°
C24N23C25H100.0°0.0°
N23C25C19H10180.0°180.0°
N23C25C19C18179.9°180.0°
N23C25C19C200.1°0.3°
C25N23C22O26180.0°180.0°
C25N23C22N210.3°0.2°
C25N23C24H7180.0°90.0°
C25N23C24H860.0°150.0°
C25N23C24H960.0°30.0°
C25C19C18C20179.8°179.7°
C25C19C18C17113.8°114.7°
C19C25N23C220.3°0.0°
C25C19C20N210.0°0.2°
C25C19C20N27179.9°179.7°
C25C19C18H6128.8°6.3°
O30C16C17H4122.5°123.6°
O30C16C17C18133.8°139.1°
O30C16C17O2913.6°20.5°
O30C16C15H326.3°36.6°
O30C16C17H5108.4°102.1°
C16C17C18C19119.9°121.5°
C16C17C18O29120.2°118.7°
C16C17C18H5121.7°118.7°
C16C17O29H5124.3°122.6°
C17C16C15H392.8°81.5°
C16C17C18H6121.6°117.5°
C16C17O29H17180.0°61.5°
C17C16O30H1863.5°67.3°
C19C18C17H6118.6°121.0°
C19C18C17O29119.9°119.9°
C18C19C20N21179.8°180.0°
C18C19C20N270.1°0.0°
C19C18C17H51.9°2.7°
C18C19C25H100.1°0.0°
C17C18C19C2065.9°65.0°
C18C17O29H5116.7°122.6°
C18C17C16H4103.8°97.3°
C18C17O29H1760.9°176.2°
N23C22O26N21179.7°179.8°
N23C22N21C200.2°0.2°
C22N23C24H70.3°90.1°
C22N23C24H8120.3°30.0°
C22N23C24H9119.7°150.0°
C22N23C25H10179.7°180.0°
C19C20N21C220.1°0.0°
C19C20N21N27179.9°180.0°
C20C19C18H651.5°173.9°
C20C19C25H10179.8°179.8°
C19C20N27H11179.9°0.1°
C19C20N27H120.1°180.0°
O29C17C16H4136.1°144.0°
O29C17C18H61.3°1.2°
O26C22N21C20179.9°180.0°
C22N21C20N27179.8°180.0°
N21C20N27H110.0°180.0°
N21C20N27H12180.0°0.0°
C20N27H11H12180.0°179.9°
H1C14C15H3147.2°63.6°
H2C14C15H327.3°176.4°
H3C15C16H4145.2°160.2°
H4C16C17H514.1°21.4°
H4C16O30H1861.6°56.3°
H5C17C18H6116.7°123.8°
H5C17O29H1755.7°61.1°
H7C24H8H9120.0°119.9°

248636

PDB entries from 2026-02-04

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