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Obsolete: X

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
POP1doub1.48Å1.48Å
POP2sing1.61Å1.48Å
POP3sing1.61Å1.61Å
PO5'sing1.61Å1.61Å
OP2HOP2sing0.97Å0.95Å
OP3HOP3sing0.97Å0.95Å
O5'C5'sing1.43Å1.43Å
C5'C4'sing1.53Å1.52Å
C5'H5'sing1.09Å1.10Å
C5'H5''sing1.09Å1.10Å
C4'O4'sing1.44Å1.45Å
C4'C3'sing1.55Å1.52Å
C4'H4'sing1.09Å1.10Å
O4'C1'sing1.44Å1.44Å
C3'O3'sing1.43Å1.44Å
C3'C2'sing1.55Å1.52Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C2'C1'sing1.54Å1.51Å
C2'H2'sing1.09Å1.10Å
C2'H2''sing1.09Å1.10Å
C1'N9sing1.47Å1.48Å
C1'H1'sing1.09Å1.10Å
N9C8sing1.36Å1.36ÅAromatic
N9C4sing1.37Å1.38ÅAromatic
C8N7doub1.30Å1.30ÅAromatic
C8H8sing1.08Å1.08Å
N7C5sing1.36Å1.40ÅAromatic
N7C8Asing1.46Å1.49Å
C5C6sing1.42Å1.42Å
C5C4doub1.40Å1.39ÅAromatic
C6O6doub1.22Å1.23Å
C6N1sing1.35Å1.39Å
N1C2sing1.36Å1.38Å
N1H1sing0.97Å1.00Å
C2N2sing1.37Å1.33Å
C2N3doub1.31Å1.33Å
N2H21sing0.97Å1.00Å
N2H22sing0.97Å1.00Å
N3C4sing1.34Å1.35Å
C1O1doub1.21Å1.20Å
C1C2Asing1.51Å1.56Å
C1C12sing1.45Å1.43Å
C2AC3sing1.54Å1.54Å
C2AH2A1sing1.09Å1.10Å
C2AH2A2sing1.09Å1.10Å
C3C3Asing1.49Å1.48Å
C3H31sing1.09Å1.10Å
C3H32sing1.09Å1.10Å
C3AC4Asing1.41Å1.37Å
C3AC12doub1.40Å1.35Å
C4AC4Bsing1.40Å1.43ÅAromatic
C4AC10doub1.42Å1.38ÅAromatic
C4BO4sing1.36Å1.35Å
C4BC5Bdoub1.38Å1.40ÅAromatic
O4CMsing1.43Å1.42Å
CMHM1sing1.09Å1.10Å
CMHM2sing1.09Å1.10Å
CMHM3sing1.09Å1.10Å
C5BC5Msing1.40Å1.40ÅAromatic
C5BH5Bsing1.08Å1.08Å
C5MO6Asing1.36Å1.38Å
C5MC9Bdoub1.39Å1.31ÅAromatic
O6AC6Asing1.44Å1.41Å
C6AO7sing1.43Å1.32Å
C6AC9Asing1.56Å1.49Å
C6AH6Asing1.09Å1.10Å
O7C8Asing1.43Å1.44Å
C8AC9sing1.54Å1.55Å
C8AH8Asing1.09Å1.10Å
C9O9sing1.43Å1.41Å
C9C9Asing1.54Å1.58Å
C9H9sing1.09Å1.10Å
O9HO9sing0.97Å0.95Å
C9AC9Bsing1.52Å1.46Å
C9AH9Asing1.09Å1.10Å
C9BC10sing1.38Å1.38ÅAromatic
C10O10sing1.35Å1.38Å
O10C11sing1.36Å1.41Å
C11O11doub1.22Å1.20Å
C11C12sing1.48Å1.43Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
OP1POP2119.7°109.5°
OP1POP3108.2°109.5°
OP1PO5'108.5°109.4°
OP2POP3108.8°109.5°
OP2PO5'108.3°109.5°
POP2HOP2109.5°114.0°
OP3PO5'101.7°109.5°
POP3HOP3109.5°114.0°
PO5'C5'120.6°123.0°
O5'C5'C4'111.1°109.4°
O5'C5'H5'109.1°109.5°
O5'C5'H5''109.1°109.5°
C4'C5'H5'109.1°109.5°
C4'C5'H5''109.1°109.5°
C5'C4'O4'111.8°110.6°
C5'C4'C3'110.6°110.6°
C5'C4'H4'108.6°110.6°
H5'C5'H5''109.4°109.4°
O4'C4'C3'107.6°103.5°
O4'C4'H4'109.6°110.7°
C4'O4'C1'108.8°107.0°
C3'C4'H4'108.6°110.7°
C4'C3'O3'109.1°110.9°
C4'C3'C2'105.2°102.1°
C4'C3'H3'109.2°110.9°
O4'C1'C2'106.2°107.3°
O4'C1'N9111.8°109.9°
O4'C1'H1'109.4°109.9°
O3'C3'C2'113.7°110.9°
O3'C3'H3'110.3°110.8°
C3'O3'HO3'109.5°114.0°
C2'C3'H3'109.2°110.9°
C3'C2'C1'105.5°104.2°
C3'C2'H2'110.5°110.6°
C3'C2'H2''110.5°110.5°
C1'C2'H2'110.4°110.5°
C1'C2'H2''110.5°110.4°
C2'C1'N9112.3°109.9°
C2'C1'H1'108.3°109.9°
H2'C2'H2''109.5°110.5°
N9C1'H1'108.8°110.0°
C1'N9C8130.6°126.3°
C1'N9C4125.7°126.2°
C8N9C4103.7°107.5°
N9C8N7117.4°109.9°
N9C8H8121.3°125.1°
N9C4C5106.5°106.1°
N9C4N3125.6°134.2°
N7C8H8121.3°125.1°
C8N7C5101.5°109.3°
C8N7C8A130.3°125.4°
C5N7C8A127.2°125.3°
N7C5C6129.6°134.1°
N7C5C4110.9°107.3°
N7C8AO7119.3°109.7°
N7C8AC9118.1°109.8°
N7C8AH8A111.7°109.7°
C6C5C4119.5°118.6°
C5C6O6128.4°120.8°
C5C6N1111.5°118.3°
C5C4N3127.9°119.7°
O6C6N1120.2°120.8°
C6N1C2125.4°120.3°
C6N1H1117.3°119.8°
C2N1H1117.3°119.8°
N1C2N2116.1°119.1°
N1C2N3123.6°121.9°
N2C2N3120.3°119.1°
C2N2H21120.0°120.0°
C2N2H22120.0°120.0°
C2N3C4112.2°121.1°
H21N2H22120.0°120.1°
O1C1C2A125.2°126.0°
O1C1C12129.1°126.0°
C2AC1C12105.7°108.0°
C1C2AC3105.6°105.2°
C1C2AH2A1110.4°110.3°
C1C2AH2A2110.4°110.3°
C1C12C3A112.3°111.1°
C1C12C11126.7°129.9°
C3C2AH2A1110.4°110.3°
C3C2AH2A2110.4°110.3°
C2AC3C3A103.5°106.0°
C2AC3H31111.0°110.1°
C2AC3H32111.0°110.1°
H2A1C2AH2A2109.5°110.3°
C3AC3H31111.0°110.2°
C3AC3H32110.9°110.1°
C3C3AC4A124.6°131.1°
C3C3AC12112.9°109.7°
H31C3H32109.5°110.1°
C4AC3AC12122.5°119.2°
C3AC4AC4B122.2°122.2°
C3AC4AC10118.6°117.7°
C3AC12C11121.0°118.9°
C4BC4AC10119.2°120.1°
C4AC4BO4118.3°120.2°
C4AC4BC5B119.5°119.7°
C4AC10C9B118.9°118.7°
C4AC10O10120.5°121.3°
O4C4BC5B122.2°120.1°
C4BO4CM120.2°117.0°
C4BC5BC5M117.8°120.4°
C4BC5BH5B121.1°119.8°
O4CMHM1109.5°109.4°
O4CMHM2109.5°109.5°
O4CMHM3109.5°109.5°
HM1CMHM2109.4°109.5°
HM1CMHM3109.5°109.4°
HM2CMHM3109.5°109.5°
C5MC5BH5B121.1°119.7°
C5BC5MO6A125.4°129.2°
C5BC5MC9B121.7°119.7°
O6AC5MC9B112.9°111.1°
C5MO6AC6A107.0°109.6°
C5MC9BC9A109.6°107.2°
C5MC9BC10123.0°121.2°
O6AC6AO7115.0°109.8°
O6AC6AC9A107.5°102.6°
O6AC6AH6A112.1°112.3°
O7C6AC9A96.2°106.5°
O7C6AH6A113.8°112.2°
C6AO7C8A116.4°110.8°
C9AC6AH6A110.9°112.8°
C6AC9AC9101.3°102.6°
C6AC9AC9B102.9°101.7°
C6AC9AH9A111.9°114.1°
O7C8AC981.3°108.1°
O7C8AH8A112.4°109.7°
C9C8AH8A110.8°109.8°
C8AC9O9111.9°110.5°
C8AC9C9A99.1°103.9°
C8AC9H9110.5°110.5°
O9C9C9A111.8°110.6°
O9C9H9112.6°110.5°
C9O9HO9109.5°114.1°
C9AC9H9110.2°110.7°
C9C9AC9B117.1°108.9°
C9C9AH9A110.6°113.8°
C9BC9AH9A112.2°114.5°
C9AC9BC10127.4°131.6°
C9BC10O10120.6°119.9°
C10O10C11121.8°118.7°
O10C11O11117.5°122.2°
O10C11C12115.6°115.8°
O11C11C12126.9°122.1°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OP1POP2OP3125.1°120.0°
OP1POP2O5'125.1°120.0°
OP1POP3O5'114.2°120.0°
OP1POP2HOP20.0°180.0°
OP1POP3HOP30.0°60.0°
OP1PO5'C5'177.2°55.0°
OP2POP3O5'114.2°120.0°
OP2POP3HOP3131.6°60.0°
OP2PO5'C5'51.3°65.0°
OP3POP2HOP2125.1°60.0°
OP3PO5'C5'63.2°175.0°
O5'POP2HOP2125.1°60.0°
O5'POP3HOP3114.2°180.0°
PO5'C5'C4'164.5°180.0°
PO5'C5'H5'44.3°60.0°
PO5'C5'H5''75.2°60.0°
O5'C5'C4'H5'120.3°120.0°
O5'C5'C4'H5''120.3°120.0°
O5'C5'H5'H5''119.3°120.0°
O5'C5'C4'O4'61.8°66.5°
O5'C5'C4'C3'58.1°179.5°
O5'C5'C4'H4'177.1°56.5°
C4'C5'H5'H5''119.2°120.0°
C5'C4'O4'C3'121.6°118.5°
C5'C4'O4'H4'120.5°122.9°
C5'C4'C3'H4'119.0°122.9°
C5'C4'O4'C1'140.2°158.5°
C5'C4'C3'O3'112.2°86.3°
C5'C4'C3'C2'125.4°155.5°
C5'C4'C3'H3'8.4°37.3°
H5'C5'C4'O4'177.9°53.5°
H5'C5'C4'C3'62.2°60.5°
H5'C5'C4'H4'56.8°176.5°
H5''C5'C4'O4'58.5°173.5°
H5''C5'C4'C3'178.3°59.5°
H5''C5'C4'H4'62.6°63.5°
O4'C4'C3'H4'118.6°118.6°
O4'C4'C3'O3'125.4°155.2°
O4'C4'C3'C2'3.1°37.0°
O4'C4'C3'H3'114.0°81.2°
C4'O4'C1'C2'26.7°26.5°
C4'O4'C1'N9149.4°146.0°
C4'O4'C1'H1'90.0°92.9°
C3'C4'O4'C1'18.7°40.0°
C4'C3'O3'C2'117.0°112.8°
C4'C3'O3'H3'119.9°123.6°
C4'C3'C2'H3'117.1°118.2°
C4'C3'O3'HO3'180.0°180.0°
C4'C3'C2'C1'12.5°20.9°
C4'C3'C2'H2'106.9°139.6°
C4'C3'C2'H2''131.8°97.8°
H4'C4'O4'C1'99.3°78.6°
H4'C4'C3'O3'6.8°36.6°
H4'C4'C3'C2'115.5°81.6°
H4'C4'C3'H3'127.4°160.2°
O4'C1'C2'C3'23.9°2.0°
O4'C1'C2'N9122.5°119.4°
O4'C1'C2'H1'117.4°119.4°
O4'C1'C2'H2'95.5°116.7°
O4'C1'C2'H2''143.3°120.7°
O4'C1'N9H1'120.9°121.0°
O4'C1'N9C844.9°23.6°
O4'C1'N9C4132.2°156.7°
O3'C3'C2'H3'123.7°123.6°
O3'C3'C2'C1'106.8°139.1°
O3'C3'C2'H2'133.9°102.2°
O3'C3'C2'H2''12.6°20.5°
C2'C3'O3'HO3'62.9°67.3°
C3'C2'C1'H2'119.4°118.8°
C3'C2'C1'H2''119.4°118.6°
C3'C2'H2'H2''121.9°122.6°
C3'C2'C1'N9146.3°121.5°
C3'C2'C1'H1'93.5°117.4°
H3'C3'O3'HO3'60.1°56.4°
H3'C3'C2'C1'129.5°97.4°
H3'C3'C2'H2'10.2°21.4°
H3'C3'C2'H2''111.1°144.0°
C1'C2'H2'H2''121.8°122.6°
C2'C1'N9H1'119.9°121.1°
C2'C1'N9C874.3°94.3°
C2'C1'N9C4108.6°85.5°
H2'C2'C1'N927.0°2.7°
H2'C2'C1'H1'147.1°123.9°
H2''C2'C1'N994.3°119.9°
H2''C2'C1'H1'25.9°1.3°
C1'N9C8C4177.5°179.8°
C1'N9C8N7177.3°180.0°
C1'N9C8H82.7°0.0°
C1'N9C4C5177.3°179.9°
C1'N9C4N32.7°0.7°
H1'C1'N9C8165.8°144.6°
H1'C1'N9C411.3°35.7°
N9C8N7H8180.0°179.9°
N9C8N7C50.0°0.0°
N9C8N7C8A169.2°180.0°
C8N9C4C50.4°0.4°
C8N9C4N3179.6°179.5°
C4N9C8N70.3°0.2°
C4N9C8H8179.8°179.7°
N9C4C5N70.4°0.4°
N9C4C5C6179.9°179.8°
N9C4C5N3180.0°179.3°
N9C4N3C2179.7°179.6°
C8N7C5C8A169.7°179.9°
C8N7C5C6179.7°180.0°
C8N7C5C40.3°0.3°
C8N7C8AO730.8°23.6°
C8N7C8AC9126.7°95.1°
C8N7C8AH8A103.1°144.2°
H8C8N7C5180.0°180.0°
H8C8N7C8A10.8°0.1°
N7C5C6C4179.4°179.7°
N7C5C6O61.5°0.0°
N7C5C6N1179.2°179.9°
N7C5C4N3179.5°179.7°
C5N7C8AO7162.6°156.5°
C5N7C8AC966.6°84.8°
C5N7C8AH8A63.5°35.9°
C8AN7C5C610.0°0.1°
C8AN7C5C4169.4°179.8°
N7C8AO7C6A49.5°118.3°
N7C8AO7C9117.4°119.7°
N7C8AO7H8A133.6°120.6°
N7C8AC9H8A130.6°120.7°
N7C8AC9O9177.8°105.4°
N7C8AC9C9A64.2°136.0°
N7C8AC9H951.5°17.2°
C5C6O6N1179.3°179.9°
C5C6N1C20.2°0.1°
C5C6N1H1179.8°180.0°
C6C5C4N30.0°0.5°
C4C5C6O6179.1°179.7°
C4C5C6N10.2°0.2°
C5C4N3C20.2°0.5°
O6C6N1C2179.2°180.0°
O6C6N1H10.8°0.1°
C6N1C2H1180.0°180.0°
C6N1C2N2179.4°180.0°
C6N1C2N30.0°0.0°
N1C2N2N3179.4°180.0°
N1C2N2H21179.4°0.0°
N1C2N2H220.6°180.0°
N1C2N3C40.2°0.3°
H1N1C2N20.6°0.0°
H1N1C2N3180.0°180.0°
C2N2H21H22180.0°180.0°
N2C2N3C4179.1°179.7°
N3C2N2H210.0°180.0°
N3C2N2H22180.0°0.0°
O1C1C2AC12179.9°179.7°
O1C1C2AC3180.0°179.9°
O1C1C2AH2A160.6°61.0°
O1C1C2AH2A260.6°61.1°
O1C1C12C3A179.9°179.6°
O1C1C12C110.0°0.0°
C1C2AC3H2A1119.4°118.9°
C1C2AC3H2A2119.4°118.9°
C1C2AH2A1H2A2121.8°122.0°
C1C2AC3C3A0.1°0.1°
C1C2AC3H31118.9°119.3°
C1C2AC3H32119.2°119.0°
C2AC1C12C3A0.0°0.7°
C2AC1C12C11179.9°179.7°
C12C1C2AC30.1°0.3°
C12C1C2AH2A1119.5°119.3°
C12C1C2AH2A2119.3°118.6°
C1C12C3AC30.1°0.8°
C1C12C3AC4A179.8°179.8°
C1C12C3AC11179.9°179.7°
C1C12C11O10179.7°158.6°
C1C12C11O110.2°21.6°
C3C2AH2A1H2A2121.8°122.2°
C2AC3C3AH31119.0°119.2°
C2AC3C3AH32119.0°119.1°
C2AC3H31H32122.8°121.7°
C2AC3C3AC4A179.9°179.8°
C2AC3C3AC120.1°0.5°
H2A1C2AC3C3A119.5°118.8°
H2A1C2AC3H310.5°0.3°
H2A1C2AC3H32121.4°122.0°
H2A2C2AC3C3A119.3°119.0°
H2A2C2AC3H31121.7°121.8°
H2A2C2AC3H320.2°0.1°
C3AC3H31H32122.8°121.7°
C3C3AC4AC12179.7°179.2°
C3C3AC4AC4B0.9°7.1°
C3C3AC4AC10179.8°172.7°
C3C3AC12C11180.0°179.6°
H31C3C3AC4A60.8°61.0°
H31C3C3AC12118.9°119.7°
H32C3C3AC4A61.1°60.7°
H32C3C3AC12119.2°118.6°
C3AC4AC4BC10179.3°179.8°
C3AC4AC4BO41.0°3.2°
C3AC4AC4BC5B178.5°176.8°
C3AC4AC10C9B178.9°176.3°
C3AC4AC10O100.2°5.4°
C4AC3AC12C110.3°0.2°
C12C3AC4AC4B178.9°172.1°
C12C3AC4AC100.5°8.0°
C3AC12C11O100.2°21.0°
C3AC12C11O11179.9°158.8°
C4AC4BO4C5B179.5°180.0°
C4AC4BO4CM178.4°180.0°
C4AC4BC5BC5M0.3°0.7°
C4AC4BC5BH5B179.7°179.3°
C4BC4AC10C9B0.4°3.8°
C4BC4AC10O10179.1°174.4°
C10C4AC4BO4179.7°176.6°
C10C4AC4BC5B0.8°3.4°
C4AC10C9BC5M0.6°1.6°
C4AC10C9BC9A178.7°178.3°
C4AC10C9BO10178.7°178.2°
C4AC10O10C110.2°28.0°
C4BO4CMHM1180.0°60.0°
C4BO4CMHM260.0°59.9°
C4BO4CMHM360.0°180.0°
O4C4BC5BC5M179.8°179.4°
O4C4BC5BH5B0.2°0.7°
C5BC4BO4CM1.1°0.1°
C4BC5BC5MH5B180.0°179.9°
C4BC5BC5MO6A179.4°178.5°
C4BC5BC5MC9B0.7°1.6°
O4CMHM1HM2120.0°120.0°
O4CMHM1HM3120.0°119.9°
O4CMHM2HM3120.0°120.0°
HM1CMHM2HM3120.0°120.0°
C5BC5MO6AC9B179.9°179.9°
C5BC5MO6AC6A179.1°161.0°
C5BC5MC9BC9A179.6°179.0°
C5BC5MC9BC101.2°1.1°
H5BC5BC5MO6A0.6°1.4°
H5BC5BC5MC9B179.3°178.5°
C5MO6AC6AO7106.8°140.6°
C5MO6AC6AC9A1.0°27.6°
C5MO6AC6AH6A121.2°93.8°
O6AC5MC9BC9A0.5°0.9°
O6AC5MC9BC10178.9°179.0°
C9BC5MO6AC6A1.0°18.9°
C5MC9BC9AC6A0.2°15.4°
C5MC9BC9AC9109.9°92.5°
C5MC9BC9AC10178.3°179.9°
C5MC9BC9AH9A120.6°138.9°
C5MC9BC10O10178.1°176.6°
O6AC6AO7C9A112.6°110.4°
O6AC6AO7H6A131.3°125.6°
O6AC6AC9AH6A122.9°121.1°
O6AC6AO7C8A67.6°91.7°
O6AC6AC9AC9120.8°87.6°
O6AC6AC9AC9B0.7°25.1°
O6AC6AC9AH9A121.4°149.0°
O7C6AC9AH6A118.4°123.5°
C6AO7C8AC967.9°1.4°
C6AO7C8AH8A176.9°121.1°
O7C6AC9AC92.1°27.8°
O7C6AC9AC9B119.4°140.5°
O7C6AC9AH9A119.9°95.7°
C9AC6AO7C8A45.0°18.7°
C6AC9AC9C8A40.3°26.1°
C6AC9AC9O977.8°144.7°
C6AC9AC9C9B111.0°107.3°
C6AC9AC9H9A118.7°123.7°
C6AC9AC9H9156.2°92.6°
C6AC9AC9BH9A120.5°123.5°
C6AC9AC9BC10178.1°164.7°
H6AC6AO7C8A161.1°142.6°
H6AC6AC9AC9116.3°151.4°
H6AC6AC9AC9B122.2°95.9°
H6AC6AC9AH9A1.5°27.9°
O7C8AC9H8A110.7°119.7°
O7C8AC9O963.5°135.0°
O7C8AC9C9A54.4°16.4°
O7C8AC9H9170.1°102.4°
C8AC9O9C9A110.1°114.5°
C8AC9O9H9125.2°122.6°
C8AC9C9AH9115.9°118.7°
C8AC9O9HO9180.0°61.4°
C8AC9C9AC9B70.8°133.3°
C8AC9C9AH9A159.0°97.6°
H8AC8AC9O947.2°15.3°
H8AC8AC9C9A165.2°103.3°
H8AC8AC9H979.1°137.9°
O9C9C9AH9126.0°122.8°
O9C9C9AC9B171.2°108.1°
O9C9C9AH9A40.9°21.0°
C9AC9O9HO969.9°175.9°
C9C9AC9BH9A129.5°128.6°
C9C9AC9BC1071.8°87.4°
H9C9O9HO954.8°61.2°
H9C9C9AC9B45.2°14.7°
H9C9C9AH9A85.1°143.7°
C9AC9BC10O100.0°3.5°
H9AC9AC9BC1057.7°41.2°
C9BC10O10C11178.5°153.8°
C10O10C11O11179.6°145.1°
C10O10C11C120.4°34.8°
O10C11O11C12180.0°179.8°

222624

PDB entries from 2024-07-17

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