WZO
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OA3 | PA | doub | 1.48Å | 1.61Å | |
| OA1 | PA | sing | 1.61Å | 1.52Å | |
| OA2 | PA | sing | 1.61Å | 1.51Å | |
| PA | OAB | sing | 1.61Å | 1.61Å | |
| O3' | C3' | sing | 1.43Å | 1.43Å | |
| C3' | C2' | sing | 1.55Å | 1.51Å | |
| C3' | C4' | sing | 1.54Å | 1.52Å | |
| CM2 | O2' | sing | 1.43Å | 1.43Å | |
| O2' | C2' | sing | 1.43Å | 1.42Å | |
| C2' | C1' | sing | 1.55Å | 1.52Å | |
| OAB | PB | sing | 1.61Å | 1.61Å | |
| N2 | C2 | sing | 1.37Å | 1.34Å | |
| N1 | C2 | sing | 1.36Å | 1.35Å | |
| N1 | C6 | sing | 1.35Å | 1.35Å | |
| C2 | N3 | doub | 1.31Å | 1.35Å | |
| O6 | C6 | doub | 1.22Å | 1.36Å | |
| C6 | C5 | sing | 1.41Å | 1.39Å | |
| OBC | PB | sing | 1.61Å | 1.61Å | |
| OBC | PC | sing | 1.61Å | 1.60Å | |
| N3 | C4 | sing | 1.34Å | 1.35Å | |
| C4' | C5' | sing | 1.53Å | 1.51Å | |
| C4' | O4' | sing | 1.44Å | 1.43Å | |
| C5 | C4 | doub | 1.40Å | 1.37Å | Aromatic |
| C5 | N7 | sing | 1.36Å | 1.34Å | Aromatic |
| O5' | C5' | sing | 1.43Å | 1.43Å | |
| O5' | PC | sing | 1.61Å | 1.61Å | |
| C4 | N9 | sing | 1.37Å | 1.34Å | Aromatic |
| N7 | CM7 | sing | 1.46Å | 1.48Å | |
| N7 | C8 | doub | 1.30Å | 1.37Å | Aromatic |
| N9 | C8 | sing | 1.37Å | 1.37Å | Aromatic |
| N9 | C1' | sing | 1.46Å | 1.48Å | |
| OC1 | PC | doub | 1.48Å | 1.51Å | |
| C1' | O4' | sing | 1.44Å | 1.42Å | |
| PB | SB | sing | 2.12Å | 2.05Å | |
| PB | OB | doub | 1.48Å | 1.48Å | |
| PC | OC2 | sing | 1.61Å | 1.51Å | |
| C8 | H1 | sing | 1.08Å | 1.08Å | |
| OC2 | H2 | sing | 0.97Å | 0.95Å | |
| SB | H3 | sing | 1.34Å | 1.30Å | |
| OA2 | H4 | sing | 0.97Å | 0.95Å | |
| OA1 | H5 | sing | 0.97Å | 0.95Å | |
| C5' | H6 | sing | 1.09Å | 1.10Å | |
| C5' | H7 | sing | 1.09Å | 1.10Å | |
| C4' | H8 | sing | 1.09Å | 1.10Å | |
| C3' | H9 | sing | 1.09Å | 1.10Å | |
| O3' | H10 | sing | 0.97Å | 0.95Å | |
| C2' | H11 | sing | 1.09Å | 1.10Å | |
| CM2 | H12 | sing | 1.09Å | 1.10Å | |
| CM2 | H13 | sing | 1.09Å | 1.10Å | |
| CM2 | H14 | sing | 1.09Å | 1.10Å | |
| C1' | H15 | sing | 1.09Å | 1.10Å | |
| N2 | H16 | sing | 0.97Å | 1.00Å | |
| N2 | H17 | sing | 0.97Å | 1.00Å | |
| N1 | H18 | sing | 0.97Å | 1.00Å | |
| CM7 | H19 | sing | 1.09Å | 1.10Å | |
| CM7 | H20 | sing | 1.09Å | 1.10Å | |
| CM7 | H21 | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OA3 | PA | OA1 | 113.6° | 109.5° |
| OA3 | PA | OA2 | 114.4° | 109.5° |
| OA3 | PA | OAB | 102.8° | 109.5° |
| OA1 | PA | OA2 | 113.8° | 109.5° |
| OA1 | PA | OAB | 104.3° | 109.4° |
| PA | OA1 | H5 | 109.5° | 114.0° |
| OA2 | PA | OAB | 106.4° | 109.5° |
| PA | OA2 | H4 | 109.5° | 114.1° |
| PA | OAB | PB | 123.5° | 134.0° |
| O3' | C3' | C2' | 111.3° | 110.5° |
| O3' | C3' | C4' | 111.3° | 110.5° |
| O3' | C3' | H9 | 111.5° | 110.5° |
| C3' | O3' | H10 | 109.5° | 114.0° |
| C2' | C3' | C4' | 101.8° | 104.2° |
| C3' | C2' | O2' | 107.1° | 110.9° |
| C3' | C2' | C1' | 103.4° | 102.1° |
| C2' | C3' | H9 | 110.4° | 110.5° |
| C3' | C2' | H11 | 111.6° | 110.8° |
| C3' | C4' | C5' | 109.9° | 109.9° |
| C3' | C4' | O4' | 105.2° | 107.3° |
| C3' | C4' | H8 | 110.1° | 110.0° |
| C4' | C3' | H9 | 110.2° | 110.5° |
| CM2 | O2' | C2' | 112.7° | 114.1° |
| O2' | CM2 | H12 | 109.5° | 109.5° |
| O2' | CM2 | H13 | 109.5° | 109.4° |
| O2' | CM2 | H14 | 109.5° | 109.5° |
| O2' | C2' | C1' | 109.9° | 110.9° |
| O2' | C2' | H11 | 112.9° | 110.8° |
| C2' | C1' | N9 | 108.3° | 110.6° |
| C2' | C1' | O4' | 107.1° | 103.5° |
| C1' | C2' | H11 | 111.4° | 111.0° |
| C2' | C1' | H15 | 109.8° | 110.6° |
| OAB | PB | OBC | 100.7° | 109.5° |
| OAB | PB | SB | 111.0° | 109.4° |
| OAB | PB | OB | 112.0° | 109.5° |
| N2 | C2 | N1 | 118.7° | 119.0° |
| N2 | C2 | N3 | 120.1° | 119.1° |
| C2 | N2 | H16 | 120.0° | 120.0° |
| C2 | N2 | H17 | 120.0° | 120.0° |
| C2 | N1 | C6 | 121.9° | 120.3° |
| N1 | C2 | N3 | 121.1° | 121.9° |
| C2 | N1 | H18 | 119.1° | 119.9° |
| N1 | C6 | O6 | 117.9° | 120.8° |
| N1 | C6 | C5 | 117.5° | 118.4° |
| C6 | N1 | H18 | 119.0° | 119.8° |
| C2 | N3 | C4 | 118.9° | 121.2° |
| O6 | C6 | C5 | 124.6° | 120.8° |
| C6 | C5 | C4 | 119.9° | 118.6° |
| C6 | C5 | N7 | 130.5° | 134.1° |
| PB | OBC | PC | 126.2° | 134.0° |
| OBC | PB | SB | 116.3° | 109.4° |
| OBC | PB | OB | 109.2° | 109.5° |
| OBC | PC | O5' | 98.9° | 109.5° |
| OBC | PC | OC1 | 106.6° | 109.5° |
| OBC | PC | OC2 | 112.5° | 109.5° |
| N3 | C4 | C5 | 120.8° | 119.7° |
| N3 | C4 | N9 | 132.4° | 134.2° |
| C5' | C4' | O4' | 109.9° | 109.9° |
| C4' | C5' | O5' | 105.9° | 109.5° |
| C4' | C5' | H6 | 110.4° | 109.5° |
| C4' | C5' | H7 | 110.3° | 109.5° |
| C5' | C4' | H8 | 110.2° | 109.8° |
| C4' | O4' | C1' | 109.3° | 107.0° |
| O4' | C4' | H8 | 111.4° | 109.9° |
| C4 | C5 | N7 | 109.6° | 107.3° |
| C5 | C4 | N9 | 106.8° | 106.1° |
| C5 | N7 | CM7 | 127.6° | 125.4° |
| C5 | N7 | C8 | 106.9° | 109.3° |
| C5' | O5' | PC | 116.1° | 123.0° |
| O5' | C5' | H6 | 110.3° | 109.5° |
| O5' | C5' | H7 | 110.3° | 109.4° |
| O5' | PC | OC1 | 108.2° | 109.4° |
| O5' | PC | OC2 | 109.3° | 109.4° |
| C4 | N9 | C8 | 108.7° | 107.5° |
| C4 | N9 | C1' | 123.2° | 126.2° |
| CM7 | N7 | C8 | 125.5° | 125.4° |
| N7 | CM7 | H19 | 109.5° | 109.4° |
| N7 | CM7 | H20 | 109.5° | 109.5° |
| N7 | CM7 | H21 | 109.5° | 109.5° |
| N7 | C8 | N9 | 108.0° | 109.9° |
| N7 | C8 | H1 | 126.0° | 125.1° |
| C8 | N9 | C1' | 128.1° | 126.3° |
| N9 | C8 | H1 | 126.0° | 125.1° |
| N9 | C1' | O4' | 110.2° | 110.6° |
| N9 | C1' | H15 | 110.3° | 110.7° |
| OC1 | PC | OC2 | 119.3° | 109.5° |
| O4' | C1' | H15 | 111.1° | 110.6° |
| SB | PB | OB | 107.5° | 109.5° |
| PB | SB | H3 | 102.0° | 103.0° |
| PC | OC2 | H2 | 109.5° | 114.0° |
| H6 | C5' | H7 | 109.5° | 109.5° |
| H12 | CM2 | H13 | 109.5° | 109.5° |
| H12 | CM2 | H14 | 109.4° | 109.5° |
| H13 | CM2 | H14 | 109.4° | 109.5° |
| H16 | N2 | H17 | 120.0° | 120.0° |
| H19 | CM7 | H20 | 109.4° | 109.5° |
| H19 | CM7 | H21 | 109.5° | 109.5° |
| H20 | CM7 | H21 | 109.4° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OA3 | PA | OA1 | OA2 | 133.2° | 120.0° |
| OA3 | PA | OA1 | OAB | 111.2° | 120.0° |
| OA3 | PA | OA2 | OAB | 112.8° | 120.0° |
| OA3 | PA | OAB | PB | 143.3° | 40.0° |
| OA3 | PA | OA2 | H4 | 0.0° | 180.0° |
| OA3 | PA | OA1 | H5 | 0.0° | 60.0° |
| OA1 | PA | OA2 | OAB | 114.4° | 120.0° |
| OA1 | PA | OAB | PB | 97.9° | 160.0° |
| OA1 | PA | OA2 | H4 | 132.9° | 60.0° |
| OA2 | PA | OAB | PB | 22.8° | 80.0° |
| OA2 | PA | OA1 | H5 | 133.2° | 60.0° |
| PA | OAB | PB | OBC | 36.3° | 180.0° |
| PA | OAB | PB | SB | 87.4° | 60.0° |
| PA | OAB | PB | OB | 152.3° | 60.0° |
| OAB | PA | OA2 | H4 | 112.8° | 60.0° |
| OAB | PA | OA1 | H5 | 111.2° | 180.0° |
| O3' | C3' | C2' | C4' | 118.7° | 118.6° |
| O3' | C3' | C2' | H9 | 124.3° | 122.7° |
| O3' | C3' | C4' | H9 | 124.2° | 122.6° |
| O3' | C3' | C2' | O2' | 36.1° | 20.5° |
| O3' | C3' | C2' | C1' | 152.2° | 97.8° |
| O3' | C3' | C4' | C5' | 87.8° | 119.9° |
| O3' | C3' | C4' | O4' | 154.0° | 120.7° |
| O3' | C3' | C4' | H8 | 33.8° | 1.2° |
| O3' | C3' | C2' | H11 | 88.0° | 144.0° |
| C2' | C3' | C4' | H9 | 117.1° | 118.7° |
| C3' | C2' | O2' | CM2 | 167.9° | 91.4° |
| C3' | C2' | O2' | C1' | 111.7° | 112.7° |
| C3' | C2' | O2' | H11 | 123.2° | 123.6° |
| C3' | C2' | C1' | H11 | 120.0° | 118.2° |
| C2' | C3' | C4' | C5' | 153.5° | 121.5° |
| C2' | C3' | C4' | O4' | 35.3° | 2.0° |
| C3' | C2' | C1' | N9 | 98.0° | 155.5° |
| C3' | C2' | C1' | O4' | 20.8° | 37.0° |
| C2' | C3' | C4' | H8 | 84.8° | 117.5° |
| C2' | C3' | O3' | H10 | 180.0° | 180.0° |
| C3' | C2' | C1' | H15 | 141.5° | 81.5° |
| C4' | C3' | C2' | O2' | 82.5° | 139.1° |
| C4' | C3' | C2' | C1' | 33.5° | 20.9° |
| C3' | C4' | C5' | O4' | 115.3° | 117.9° |
| C3' | C4' | C5' | H8 | 121.6° | 121.1° |
| C3' | C4' | O4' | H8 | 119.3° | 119.6° |
| C3' | C4' | C5' | O5' | 62.1° | 175.7° |
| C3' | C4' | O4' | C1' | 23.3° | 26.5° |
| C3' | C4' | C5' | H6 | 178.5° | 64.3° |
| C3' | C4' | C5' | H7 | 57.3° | 55.7° |
| C4' | C3' | O3' | H10 | 67.2° | 65.2° |
| C4' | C3' | C2' | H11 | 153.4° | 97.4° |
| CM2 | O2' | C2' | C1' | 80.4° | 155.9° |
| CM2 | O2' | C2' | H11 | 44.7° | 32.1° |
| O2' | CM2 | H12 | H13 | 120.0° | 120.0° |
| O2' | CM2 | H12 | H14 | 120.0° | 120.0° |
| O2' | CM2 | H13 | H14 | 120.0° | 120.0° |
| O2' | C2' | C1' | H11 | 125.9° | 123.6° |
| O2' | C2' | C1' | N9 | 147.9° | 86.3° |
| O2' | C2' | C1' | O4' | 93.3° | 155.2° |
| O2' | C2' | C3' | H9 | 160.4° | 102.2° |
| C2' | O2' | CM2 | H12 | 180.0° | 180.0° |
| C2' | O2' | CM2 | H13 | 60.0° | 60.0° |
| C2' | O2' | CM2 | H14 | 60.0° | 60.0° |
| O2' | C2' | C1' | H15 | 27.5° | 36.7° |
| C2' | C1' | O4' | C4' | 1.5° | 40.0° |
| C2' | C1' | N9 | C4 | 83.9° | 85.0° |
| C2' | C1' | N9 | C8 | 94.3° | 94.9° |
| C2' | C1' | N9 | O4' | 116.9° | 114.0° |
| C2' | C1' | N9 | H15 | 120.1° | 123.0° |
| C2' | C1' | O4' | H15 | 119.8° | 118.5° |
| C1' | C2' | C3' | H9 | 83.5° | 139.6° |
| OAB | PB | OBC | SB | 120.1° | 120.0° |
| OAB | PB | OBC | OB | 118.1° | 120.0° |
| OAB | PB | OBC | PC | 178.0° | 180.0° |
| OAB | PB | SB | OB | 122.9° | 120.0° |
| OAB | PB | SB | H3 | 122.9° | 60.0° |
| N2 | C2 | N1 | N3 | 179.9° | 179.7° |
| N2 | C2 | N1 | C6 | 179.9° | 179.7° |
| N2 | C2 | N3 | C4 | 179.6° | 180.0° |
| C2 | N2 | H16 | H17 | 180.0° | 180.0° |
| N2 | C2 | N1 | H18 | 0.1° | 0.3° |
| C2 | N1 | C6 | H18 | 180.0° | 180.0° |
| C2 | N1 | C6 | O6 | 179.2° | 179.7° |
| C2 | N1 | C6 | C5 | 0.0° | 0.5° |
| N1 | C2 | N3 | C4 | 0.5° | 0.3° |
| N1 | C2 | N2 | H16 | 179.9° | 179.7° |
| N1 | C2 | N2 | H17 | 0.1° | 0.2° |
| C6 | N1 | C2 | N3 | 0.2° | 0.0° |
| N1 | C6 | O6 | C5 | 179.1° | 179.2° |
| N1 | C6 | C5 | C4 | 0.0° | 0.8° |
| N1 | C6 | C5 | N7 | 179.6° | 179.9° |
| C2 | N3 | C4 | C5 | 0.5° | 0.0° |
| C2 | N3 | C4 | N9 | 179.9° | 180.0° |
| N3 | C2 | N2 | H16 | 0.0° | 0.0° |
| N3 | C2 | N2 | H17 | 180.0° | 180.0° |
| N3 | C2 | N1 | H18 | 179.8° | 180.0° |
| O6 | C6 | C5 | C4 | 179.1° | 180.0° |
| O6 | C6 | C5 | N7 | 1.3° | 0.7° |
| O6 | C6 | N1 | H18 | 0.8° | 0.2° |
| C6 | C5 | C4 | N3 | 0.3° | 0.5° |
| C6 | C5 | C4 | N7 | 179.7° | 179.5° |
| C6 | C5 | C4 | N9 | 180.0° | 179.5° |
| C6 | C5 | N7 | CM7 | 0.6° | 0.6° |
| C6 | C5 | N7 | C8 | 179.6° | 179.4° |
| C5 | C6 | N1 | H18 | 180.0° | 179.4° |
| PB | OBC | PC | O5' | 150.3° | 165.0° |
| PB | OBC | PC | OC1 | 97.6° | 45.0° |
| OBC | PB | SB | OB | 122.8° | 120.0° |
| PB | OBC | PC | OC2 | 35.0° | 75.0° |
| OBC | PB | SB | H3 | 122.8° | 60.0° |
| OBC | PC | O5' | C5' | 58.3° | 175.1° |
| OBC | PC | O5' | OC1 | 110.8° | 120.0° |
| OBC | PC | O5' | OC2 | 117.8° | 120.0° |
| OBC | PC | OC1 | OC2 | 128.7° | 120.1° |
| PC | OBC | PB | SB | 62.0° | 60.0° |
| PC | OBC | PB | OB | 59.9° | 60.0° |
| OBC | PC | OC2 | H2 | 126.0° | 59.9° |
| N3 | C4 | C5 | N9 | 179.7° | 180.0° |
| N3 | C4 | C5 | N7 | 180.0° | 180.0° |
| N3 | C4 | N9 | C8 | 179.8° | 180.0° |
| N3 | C4 | N9 | C1' | 1.3° | 0.1° |
| C5' | C4' | O4' | H8 | 122.4° | 121.0° |
| C4' | C5' | O5' | H6 | 119.5° | 120.0° |
| C4' | C5' | O5' | H7 | 119.4° | 120.0° |
| C4' | C5' | O5' | PC | 157.6° | 180.0° |
| C5' | C4' | O4' | C1' | 141.5° | 145.9° |
| C4' | C5' | H6 | H7 | 121.6° | 120.0° |
| C5' | C4' | C3' | H9 | 36.4° | 2.8° |
| O4' | C4' | C5' | O5' | 53.2° | 66.5° |
| C4' | O4' | C1' | N9 | 119.1° | 158.5° |
| O4' | C4' | C5' | H6 | 66.2° | 53.6° |
| O4' | C4' | C5' | H7 | 172.6° | 173.6° |
| O4' | C4' | C3' | H9 | 81.8° | 116.7° |
| C4' | O4' | C1' | H15 | 118.3° | 78.5° |
| C4 | C5 | N7 | CM7 | 179.8° | 180.0° |
| C4 | C5 | N7 | C8 | 0.0° | 0.0° |
| C5 | C4 | N9 | C8 | 0.6° | 0.1° |
| C5 | C4 | N9 | C1' | 179.0° | 180.0° |
| N7 | C5 | C4 | N9 | 0.3° | 0.0° |
| C5 | N7 | CM7 | C8 | 179.8° | 180.0° |
| C5 | N7 | C8 | N9 | 0.4° | 0.0° |
| C5 | N7 | C8 | H1 | 179.6° | 179.9° |
| C5 | N7 | CM7 | H19 | 180.0° | 90.0° |
| C5 | N7 | CM7 | H20 | 60.0° | 150.0° |
| C5 | N7 | CM7 | H21 | 60.0° | 30.0° |
| C5' | O5' | PC | OC1 | 169.1° | 55.0° |
| C5' | O5' | PC | OC2 | 59.5° | 64.9° |
| O5' | C5' | H6 | H7 | 121.6° | 120.0° |
| O5' | C5' | C4' | H8 | 176.3° | 54.5° |
| O5' | PC | OC1 | OC2 | 125.7° | 119.9° |
| O5' | PC | OC2 | H2 | 125.2° | 60.1° |
| PC | O5' | C5' | H6 | 38.2° | 60.0° |
| PC | O5' | C5' | H7 | 83.0° | 60.1° |
| C4 | N9 | C8 | N7 | 0.6° | 0.1° |
| C4 | N9 | C8 | C1' | 178.4° | 179.9° |
| C4 | N9 | C1' | O4' | 159.3° | 160.9° |
| C4 | N9 | C8 | H1 | 179.4° | 179.9° |
| C4 | N9 | C1' | H15 | 36.3° | 38.0° |
| CM7 | N7 | C8 | N9 | 179.4° | 180.0° |
| CM7 | N7 | C8 | H1 | 0.6° | 0.1° |
| N7 | CM7 | H19 | H20 | 120.0° | 120.0° |
| N7 | CM7 | H19 | H21 | 120.0° | 120.0° |
| N7 | CM7 | H20 | H21 | 120.0° | 120.0° |
| N7 | C8 | N9 | H1 | 180.0° | 179.9° |
| N7 | C8 | N9 | C1' | 179.0° | 180.0° |
| C8 | N7 | CM7 | H19 | 0.2° | 90.0° |
| C8 | N7 | CM7 | H20 | 120.2° | 30.0° |
| C8 | N7 | CM7 | H21 | 119.8° | 150.0° |
| C8 | N9 | C1' | O4' | 22.5° | 19.1° |
| C8 | N9 | C1' | H15 | 145.6° | 142.1° |
| N9 | C1' | O4' | H15 | 122.5° | 123.0° |
| C1' | N9 | C8 | H1 | 1.0° | 0.1° |
| N9 | C1' | C2' | H11 | 21.9° | 37.3° |
| OC1 | PC | OC2 | H2 | 0.0° | 180.0° |
| C1' | O4' | C4' | H8 | 96.0° | 93.1° |
| O4' | C1' | C2' | H11 | 140.8° | 81.1° |
| OB | PB | SB | H3 | 0.0° | 180.0° |
| H6 | C5' | C4' | H8 | 56.9° | 174.6° |
| H7 | C5' | C4' | H8 | 64.3° | 65.4° |
| H8 | C4' | C3' | H9 | 158.1° | 123.8° |
| H9 | C3' | O3' | H10 | 56.3° | 57.4° |
| H9 | C3' | C2' | H11 | 36.4° | 21.3° |
| H11 | C2' | C1' | H15 | 98.5° | 160.4° |
| H12 | CM2 | H13 | H14 | 120.0° | 120.0° |
| H19 | CM7 | H20 | H21 | 120.0° | 120.0° |
