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Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O1BPBsing1.61Å1.54Å
O1BH1Bsing0.97Å0.95Å
PBO2Bsing1.61Å1.59Å
PBO3Bdoub1.48Å1.49Å
PBO3Asing1.61Å1.61Å
O2BH2Bsing0.97Å0.95Å
O3APAsing1.61Å1.63Å
PAO1Asing1.61Å1.49Å
PAO2Adoub1.48Å1.46Å
PAO5Gsing1.61Å1.62Å
O1AH1Asing0.97Å0.95Å
O5GC5Bsing1.43Å1.46Å
C5BC5Asing1.53Å1.54Å
C5BH5B1sing1.09Å1.10Å
C5BH5B2sing1.09Å1.10Å
C5AC5sing1.51Å1.51Å
C5AH5A1sing1.09Å1.10Å
C5AH5A2sing1.09Å1.10Å
C5C4doub1.36Å1.40ÅAromatic
C5S1sing1.79Å1.72ÅAromatic
C4C4Asing1.51Å1.58Å
C4N3sing1.32Å1.39ÅAromatic
C4AH4A1sing1.09Å1.10Å
C4AH4A2sing1.09Å1.10Å
C4AH4A3sing1.09Å1.10Å
S1C2sing1.74Å1.77ÅAromatic
C2C8sing1.51Å1.49Å
C2N3doub1.31Å1.36ÅAromatic
C8O9sing1.43Å1.25Å
C8C9sing1.53Å1.54Å
C8H8sing1.09Å1.10Å
O9H9sing0.97Å0.95Å
C9C10sing1.53Å1.51Å
C9H9C1sing1.09Å1.10Å
C9H9C2sing1.09Å1.10Å
C10C11sing1.53Å1.52Å
C10C12sing1.53Å1.52Å
C10H10sing1.09Å1.10Å
C11H111sing1.09Å1.10Å
C11H112sing1.09Å1.10Å
C11H113sing1.09Å1.10Å
C12H121sing1.09Å1.10Å
C12H122sing1.09Å1.10Å
C12H123sing1.09Å1.10Å
N3C35sing1.46Å1.49Å
C35C5'sing1.51Å1.54Å
C35H351sing1.09Å1.10Å
C35H352sing1.09Å1.10Å
C5'C6'doub1.38Å1.42ÅAromatic
C5'C4'sing1.40Å1.42ÅAromatic
C6'N1'sing1.32Å1.34ÅAromatic
C6'H6'sing1.08Å1.08Å
N1'C2'doub1.32Å1.36ÅAromatic
C2'C2Asing1.51Å1.52Å
C2'N3'sing1.32Å1.39ÅAromatic
C2AH2A1sing1.09Å1.10Å
C2AH2A2sing1.09Å1.10Å
C2AH2A3sing1.09Å1.10Å
N3'C4'doub1.33Å1.41ÅAromatic
C4'N4'sing1.39Å1.35Å
N4'H4'1sing0.97Å1.00Å
N4'H4'2sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
PBO1BH1B109.5°106.7°
O1BPBO2B108.5°109.5°
O1BPBO3B114.5°109.5°
O1BPBO3A103.4°109.5°
O2BPBO3B112.8°109.5°
O2BPBO3A106.5°109.5°
PBO2BH2B109.5°106.8°
O3BPBO3A110.5°109.5°
PBO3APA127.8°106.8°
O3APAO1A104.2°109.4°
O3APAO2A111.5°109.5°
O3APAO5G102.8°109.5°
O1APAO2A118.9°109.5°
O1APAO5G113.7°109.5°
PAO1AH1A109.5°106.8°
O2APAO5G104.7°109.5°
PAO5GC5B120.8°106.8°
O5GC5BC5A106.3°109.5°
O5GC5BH5B1111.2°109.4°
O5GC5BH5B2110.5°109.5°
C5AC5BH5B1111.2°109.5°
C5AC5BH5B2110.5°109.5°
C5BC5AC5108.1°109.5°
C5BC5AH5A1110.3°109.5°
C5BC5AH5A2109.9°109.5°
H5B1C5BH5B2107.0°109.4°
C5C5AH5A1110.2°109.4°
C5C5AH5A2109.9°109.5°
C5AC5C4131.9°129.7°
C5AC5S1118.7°129.7°
H5A1C5AH5A2108.4°109.5°
C4C5S1109.3°100.6°
C5C4C4A121.6°120.8°
C5C4N3114.3°118.4°
C5S1C292.5°97.4°
C4AC4N3122.9°120.8°
C4C4AH4A1109.5°109.5°
C4C4AH4A2109.5°109.4°
C4C4AH4A3109.5°109.5°
C4N3C2114.2°121.4°
C4N3C35121.9°119.3°
H4A1C4AH4A2109.5°109.5°
H4A1C4AH4A3109.5°109.5°
H4A2C4AH4A3109.5°109.5°
S1C2C8121.8°128.9°
S1C2N3109.5°102.2°
C8C2N3128.7°128.9°
C2C8O9120.1°109.5°
C2C8C9114.5°109.5°
C2C8H8102.6°109.4°
C2N3C35123.8°119.3°
O9C8C9120.7°109.5°
O9C8H888.1°109.5°
C8O9H9109.5°106.8°
C9C8H8101.2°109.5°
C8C9C10112.3°109.4°
C8C9H9C1107.9°109.5°
C8C9H9C2108.5°109.5°
C10C9H9C1107.9°109.5°
C10C9H9C2108.6°109.5°
C9C10C11110.1°109.5°
C9C10C12106.9°109.4°
C9C10H10110.8°109.5°
H9C1C9H9C2111.7°109.5°
C11C10C12109.8°109.5°
C11C10H10108.0°109.5°
C10C11H111109.4°109.5°
C10C11H112109.5°109.5°
C10C11H113109.5°109.5°
C12C10H10111.2°109.4°
C10C12H121109.4°109.5°
C10C12H122109.5°109.4°
C10C12H123109.5°109.4°
H111C11H112109.5°109.5°
H111C11H113109.5°109.5°
H112C11H113109.4°109.4°
H121C12H122109.6°109.5°
H121C12H123109.4°109.5°
H122C12H123109.4°109.5°
N3C35C5'107.8°109.5°
N3C35H351110.4°109.5°
N3C35H352110.0°109.4°
C5'C35H351110.4°109.5°
C5'C35H352110.0°109.4°
C35C5'C6'117.8°120.9°
C35C5'C4'124.6°120.8°
H351C35H352108.2°109.5°
C6'C5'C4'117.3°118.3°
C5'C6'N1'122.5°119.2°
C5'C6'H6'118.8°120.4°
C5'C4'N3'117.9°118.9°
C5'C4'N4'126.9°120.5°
N1'C6'H6'118.7°120.4°
C6'N1'C2'121.2°121.0°
N1'C2'C2A122.5°119.1°
N1'C2'N3'118.9°121.8°
C2AC2'N3'118.6°119.1°
C2'C2AH2A1109.4°109.5°
C2'C2AH2A2109.4°109.5°
C2'C2AH2A3109.5°109.4°
C2'N3'C4'122.0°120.7°
H2A1C2AH2A2109.5°109.5°
H2A1C2AH2A3109.5°109.5°
H2A2C2AH2A3109.5°109.4°
N3'C4'N4'114.8°120.5°
C4'N4'H4'1109.5°120.0°
C4'N4'H4'2109.5°120.0°
H4'1N4'H4'2109.4°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1BPBO2BO3B127.9°120.0°
O1BPBO2BO3A110.7°120.0°
O1BPBO3BO3A116.3°120.0°
O1BPBO2BH2B77.6°60.0°
O1BPBO3APA147.2°165.0°
H1BO1BPBO2B120.4°60.0°
H1BO1BPBO3B112.7°60.0°
H1BO1BPBO3A7.6°180.0°
O2BPBO3BO3A119.1°120.0°
O2BPBO3APA98.6°75.0°
O3BPBO2BH2B50.3°180.0°
O3BPBO3APA24.3°45.0°
O3APBO2BH2B171.7°60.0°
PBO3APAO1A173.4°75.0°
PBO3APAO2A44.0°45.0°
PBO3APAO5G67.7°165.0°
O3APAO1AO2A124.8°120.0°
O3APAO1AO5G111.2°120.0°
O3APAO2AO5G110.5°120.0°
O3APAO1AH1A170.0°60.0°
O3APAO5GC5B76.5°175.0°
O1APAO2AO5G128.3°120.0°
O1APAO5GC5B35.4°65.0°
O2APAO1AH1A65.2°180.0°
O2APAO5GC5B166.8°55.0°
O5GPAO1AH1A58.9°60.0°
PAO5GC5BC5A168.4°180.0°
PAO5GC5BH5B170.4°60.0°
PAO5GC5BH5B248.3°59.9°
O5GC5BC5AH5B1121.2°120.0°
O5GC5BC5AH5B2120.0°120.1°
O5GC5BH5B1H5B2120.8°120.0°
O5GC5BC5AC5174.7°180.0°
O5GC5BC5AH5A154.2°60.1°
O5GC5BC5AH5A265.3°60.0°
C5AC5BH5B1H5B2120.9°120.0°
C5BC5AC5H5A1120.6°120.0°
C5BC5AC5H5A2120.0°120.0°
C5BC5AH5A1H5A2120.4°120.1°
C5BC5AC5C4111.6°90.0°
C5BC5AC5S171.6°90.0°
H5B1C5BC5AC564.0°60.0°
H5B1C5BC5AH5A1175.4°180.0°
H5B1C5BC5AH5A255.9°60.0°
H5B2C5BC5AC554.7°60.0°
H5B2C5BC5AH5A165.8°60.0°
H5B2C5BC5AH5A2174.7°180.0°
C5C5AH5A1H5A2120.4°120.0°
C5AC5C4S1177.1°179.9°
C5AC5C4C4A6.6°0.0°
C5AC5C4N3174.3°179.7°
C5AC5S1C2173.3°180.0°
H5A1C5AC5C4127.8°150.1°
H5A1C5AC5S149.0°30.0°
H5A2C5AC5C48.4°30.1°
H5A2C5AC5S1168.4°150.0°
C5C4C4AN3166.6°179.7°
C5C4C4AH4A146.4°84.1°
C5C4C4AH4A2166.3°155.9°
C5C4C4AH4A373.6°35.9°
C4C5S1C24.2°0.0°
C5C4N3C21.0°0.6°
C5C4N3C35174.4°180.0°
S1C5C4C4A170.4°180.0°
S1C5C4N32.7°0.3°
C5S1C2C8176.6°180.0°
C5S1C2N34.8°0.3°
C4C4AH4A1H4A2120.0°120.0°
C4C4AH4A1H4A3120.0°120.0°
C4C4AH4A2H4A3120.0°120.0°
C4AC4N3C2166.5°179.7°
C4AC4N3C3518.0°0.3°
N3C4C4AH4A1147.0°95.6°
N3C4C4AH4A227.0°24.4°
N3C4C4AH4A393.0°144.4°
C4N3C2S14.1°0.5°
C4N3C2C8177.4°179.8°
C4N3C2C35175.3°179.4°
C4N3C35C5'76.6°80.8°
C4N3C35H351162.8°159.2°
C4N3C35H35243.5°39.1°
H4A1C4AH4A2H4A3120.0°120.0°
S1C2C8N3178.3°179.6°
S1C2C8O9176.2°50.0°
S1C2C8C920.1°70.0°
S1C2C8H888.7°170.0°
S1C2N3C35171.2°179.9°
C2C8O9C9154.6°120.0°
C2C8O9H8103.5°119.9°
C2C8C9H8109.6°120.0°
C2C8O9H9120.0°60.0°
C2C8C9C10174.0°172.2°
C2C8C9H9C167.2°52.2°
C2C8C9H9C254.0°67.8°
C8C2N3C357.2°0.4°
N3C2C8O92.1°130.4°
N3C2C8C9158.2°109.6°
N3C2C8H893.1°10.4°
C2N3C35C5'98.4°99.8°
C2N3C35H35122.3°20.2°
C2N3C35H352141.6°140.3°
O9C8C9H894.5°120.0°
O9C8C9C1030.1°52.2°
O9C8C9H9C188.7°67.8°
O9C8C9H9C2150.1°172.2°
C9C8O9H985.4°60.0°
C8C9C10H9C1118.8°120.0°
C8C9C10H9C2120.0°119.9°
C8C9H9C1H9C2119.2°120.0°
C8C9C10C1174.5°55.9°
C8C9C10C12166.3°175.9°
C8C9C10H1044.9°64.1°
H8C8O9H916.5°180.0°
H8C8C9C1064.4°67.8°
H8C8C9H9C1176.8°172.2°
H8C8C9H9C255.6°52.2°
C10C9H9C1H9C2119.3°120.0°
C9C10C11C12117.5°120.0°
C9C10C11H10121.2°120.1°
C9C10C12H10121.1°120.0°
C9C10C11H11180.5°75.2°
C9C10C11H112159.5°44.8°
C9C10C11H11339.6°164.8°
C9C10C12H12151.3°60.0°
C9C10C12H122171.3°60.0°
C9C10C12H12368.7°180.0°
H9C1C9C10C11166.7°175.9°
H9C1C9C10C1247.5°64.1°
H9C1C9C10H1073.8°55.9°
H9C2C9C10C1145.4°64.0°
H9C2C9C10C1273.8°56.0°
H9C2C9C10H10164.9°175.9°
C11C10C12H10119.5°120.0°
C10C11H111H112120.0°120.0°
C10C11H111H113120.0°120.0°
C10C11H112H113120.0°120.0°
C11C10C12H12168.2°60.0°
C11C10C12H12251.9°180.0°
C11C10C12H123171.9°60.0°
C12C10C11H111162.1°164.8°
C12C10C11H11242.0°75.2°
C12C10C11H11377.9°44.8°
C10C12H121H122120.0°120.0°
C10C12H121H123120.0°120.0°
C10C12H122H123120.0°120.0°
H10C10C11H11140.7°44.9°
H10C10C11H11279.3°164.9°
H10C10C11H113160.7°75.2°
H10C10C12H121172.3°180.0°
H10C10C12H12267.6°60.0°
H10C10C12H12352.4°60.0°
H111C11H112H113120.0°120.0°
H121C12H122H123120.0°120.1°
N3C35C5'H351120.6°120.0°
N3C35C5'H352120.0°119.9°
N3C35H351H352120.4°120.0°
N3C35C5'C6'119.3°78.8°
N3C35C5'C4'67.4°101.0°
C5'C35H351H352120.5°120.0°
C35C5'C6'C4'173.7°179.8°
C35C5'C6'N1'174.0°180.0°
C35C5'C6'H6'6.0°0.0°
C35C5'C4'N3'172.4°179.8°
C35C5'C4'N4'0.9°0.2°
H351C35C5'C6'120.0°161.2°
H351C35C5'C4'53.2°19.0°
H352C35C5'C6'0.7°41.2°
H352C35C5'C4'172.6°139.1°
C5'C6'N1'H6'180.0°180.0°
C5'C6'N1'C2'2.8°0.0°
C6'C5'C4'N3'0.8°0.5°
C6'C5'C4'N4'174.1°180.0°
C4'C5'C6'N1'0.3°0.2°
C4'C5'C6'H6'179.7°179.8°
C5'C4'N3'C2'0.5°0.5°
C5'C4'N3'N4'174.1°179.5°
C5'C4'N4'H4'161.0°169.4°
C5'C4'N4'H4'2179.0°10.6°
C6'N1'C2'C2A178.3°180.0°
C6'N1'C2'N3'4.0°0.0°
H6'C6'N1'C2'177.2°180.0°
N1'C2'C2AN3'177.6°180.0°
N1'C2'C2AH2A1112.3°89.9°
N1'C2'C2AH2A2127.6°150.0°
N1'C2'C2AH2A37.6°30.0°
N1'C2'N3'C4'2.9°0.2°
C2'C2AH2A1H2A2120.0°120.0°
C2'C2AH2A1H2A3120.0°119.9°
C2'C2AH2A2H2A3120.0°119.9°
C2AC2'N3'C4'179.4°179.7°
N3'C2'C2AH2A165.3°90.0°
N3'C2'C2AH2A254.7°30.1°
N3'C2'C2AH2A3174.7°150.0°
C2'N3'C4'N4'173.6°180.0°
H2A1C2AH2A2H2A3120.0°120.0°
N3'C4'N4'H4'1112.5°10.1°
N3'C4'N4'H4'27.5°169.8°
C4'N4'H4'1H4'2120.0°179.9°

221716

PDB entries from 2024-06-26

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