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SummaryGeometryRelated PDB entries

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Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O10C02doub1.22Å1.20Å
C02N01sing1.35Å1.46Å
C02N03sing1.35Å1.46Å
C04N03sing1.47Å1.44Å
C04C05sing1.51Å1.53Å
C05C06doub1.35Å1.39ÅAromatic
C05O09sing1.34Å1.34ÅAromatic
C06C07sing1.41Å1.38ÅAromatic
O09C08sing1.34Å1.34ÅAromatic
C07C08doub1.34Å1.38ÅAromatic
N01H1sing0.97Å1.00Å
N01H2sing0.97Å1.00Å
N03H3sing0.97Å1.00Å
C04H4sing1.09Å1.10Å
C04H5sing1.09Å1.10Å
C06H6sing1.08Å1.08Å
C07H7sing1.08Å1.08Å
C08H8sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O10C02N01122.3°120.0°
O10C02N03119.4°120.0°
N01C02N03118.3°120.0°
C02N01H1120.0°120.0°
C02N01H2120.0°120.0°
C02N03C04119.9°120.0°
C02N03H3120.1°120.0°
N03C04C05110.6°109.5°
C04N03H3120.0°120.0°
N03C04H4109.2°109.5°
N03C04H5109.2°109.5°
C04C05C06124.8°125.8°
C04C05O09127.3°125.8°
C05C04H4109.2°109.4°
C05C04H5109.2°109.4°
C06C05O09107.9°108.4°
C05C06C07107.1°106.9°
C05C06H6126.4°126.6°
C05O09C08109.5°109.5°
C06C07C08107.1°106.8°
C07C06H6126.5°126.6°
C06C07H7126.5°126.6°
O09C08C07108.4°108.5°
O09C08H8125.8°125.8°
C08C07H7126.5°126.6°
C07C08H8125.8°125.8°
H1N01H2120.0°120.0°
H4C04H5109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O10C02N01N03177.9°180.0°
O10C02N03C040.6°0.0°
O10C02N01H10.0°180.0°
O10C02N01H2180.0°0.3°
O10C02N03H3179.4°180.0°
N01C02N03C04178.5°180.0°
C02N01H1H2180.0°179.7°
N01C02N03H31.5°0.0°
C02N03C04H3180.0°180.0°
C02N03C04C05124.7°180.0°
N03C02N01H1177.8°0.0°
N03C02N01H22.1°179.7°
C02N03C04H4115.2°60.0°
C02N03C04H54.5°60.0°
N03C04C05H4120.2°120.0°
N03C04C05H5120.1°120.0°
N03C04C05C06169.6°90.0°
N03C04C05O0910.7°90.3°
N03C04H4H5119.5°120.0°
C04C05C06O09179.8°179.8°
C04C05C06C07179.7°180.0°
C04C05O09C08179.8°179.8°
C05C04N03H355.4°0.0°
C05C04H4H5119.5°120.0°
C04C05C06H60.4°0.1°
C05C06C07H6180.0°179.9°
C06C05O09C080.5°0.4°
C05C06C07C080.6°0.0°
C06C05C04H470.3°30.0°
C06C05C04H549.4°150.0°
C05C06C07H7179.4°180.0°
O09C05C06C070.1°0.3°
C05O09C08C070.8°0.4°
O09C05C04H4109.4°149.7°
O09C05C04H5130.9°29.7°
O09C05C06H6179.9°179.8°
C05O09C08H8179.2°179.8°
C06C07C08O090.9°0.2°
C06C07C08H7180.0°180.0°
C06C07C08H8179.2°180.0°
O09C08C07H8180.0°179.8°
O09C08C07H7179.1°179.7°
C08C07C06H6179.4°179.9°
H3N03C04H464.8°120.0°
H3N03C04H5175.5°120.0°
H6C06C07H70.6°0.1°
H7C07C08H80.9°0.0°

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PDB entries from 2024-07-17

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