English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

WQM

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C5	C4	doub	1.34Å	1.36Å
C5	C7	sing	1.47Å	1.43Å
C4	C3	sing	1.51Å	1.40Å
O1	C7	doub	1.22Å	1.26Å
C7	N2	sing	1.34Å	1.37Å
N1	C1	sing	1.46Å	1.45Å
N1	C2	sing	1.35Å	1.33Å
C3	C2	sing	1.51Å	1.50Å
C3	C6	sing	1.51Å	1.38Å
N2	C6	doub	1.29Å	1.35Å
C2	O2	doub	1.21Å	1.23Å
N1	H1	sing	0.97Å	1.00Å
C4	H2	sing	1.08Å	1.08Å
C5	H3	sing	1.08Å	1.08Å
C6	H4	sing	1.08Å	1.08Å
C1	H5	sing	1.09Å	1.10Å
C1	H6	sing	1.09Å	1.10Å
C1	H7	sing	1.09Å	1.10Å
C3	H8	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C4	C5	C7	120.5°	120.0°
C5	C4	C3	120.4°	117.4°
C5	C4	H2	119.8°	121.3°
C4	C5	H3	119.7°	120.0°
C5	C7	O1	124.6°	118.7°
C5	C7	N2	116.7°	122.7°
C7	C5	H3	119.7°	120.0°
C4	C3	C2	121.5°	107.8°
C4	C3	C6	119.0°	117.6°
C3	C4	H2	119.8°	121.3°
C4	C3	H8	90.2°	107.8°
O1	C7	N2	118.7°	118.7°
C7	N2	C6	123.3°	122.8°
C1	N1	C2	120.9°	120.0°
C1	N1	H1	119.5°	120.0°
N1	C1	H5	109.5°	109.4°
N1	C1	H6	109.4°	109.6°
N1	C1	H7	109.5°	109.5°
N1	C2	C3	117.6°	120.0°
N1	C2	O2	121.4°	120.0°
C2	N1	H1	119.6°	120.0°
C2	C3	C6	119.5°	107.8°
C3	C2	O2	121.0°	120.0°
C2	C3	H8	90.1°	107.6°
C3	C6	N2	120.1°	119.5°
C3	C6	H4	119.9°	120.3°
C6	C3	H8	90.2°	107.8°
N2	C6	H4	120.0°	120.3°
H5	C1	H6	109.5°	109.5°
H5	C1	H7	109.5°	109.5°
H6	C1	H7	109.5°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C4	C5	C7	H3	180.0°	180.0°
C5	C4	C3	H2	180.0°	179.7°
C4	C5	C7	O1	179.7°	180.0°
C4	C5	C7	N2	0.5°	0.0°
C5	C4	C3	C2	180.0°	121.8°
C5	C4	C3	C6	0.6°	0.3°
C5	C4	C3	H8	89.7°	122.3°
C7	C5	C4	C3	0.1°	0.0°
C5	C7	O1	N2	179.2°	180.0°
C5	C7	N2	C6	0.4°	0.3°
C7	C5	C4	H2	179.9°	179.7°
C4	C3	C2	N1	7.7°	179.9°
C4	C3	C2	C6	179.5°	127.9°
C4	C3	C2	H8	90.3°	116.0°
C4	C3	C6	H8	90.3°	122.0°
C4	C3	C6	N2	0.7°	0.5°
C4	C3	C2	O2	171.9°	0.0°
C3	C4	C5	H3	179.9°	180.0°
C4	C3	C6	H4	179.3°	180.0°
O1	C7	N2	C6	179.6°	179.7°
O1	C7	C5	H3	0.3°	0.0°
C7	N2	C6	C3	0.3°	0.5°
N2	C7	C5	H3	179.5°	180.0°
C7	N2	C6	H4	179.8°	180.0°
C1	N1	C2	H1	180.0°	179.8°
C1	N1	C2	C3	167.5°	180.0°
C1	N1	C2	O2	12.9°	0.1°
N1	C1	H5	H6	120.0°	120.1°
N1	C1	H5	H7	120.0°	120.0°
N1	C1	H6	H7	120.0°	120.0°
N1	C2	C3	O2	179.7°	179.9°
N1	C2	C3	C6	172.8°	52.0°
C2	N1	C1	H5	180.0°	60.1°
C2	N1	C1	H6	60.0°	59.9°
C2	N1	C1	H7	60.0°	179.9°
N1	C2	C3	H8	82.5°	64.0°
C2	C3	C6	H8	90.3°	115.9°
C2	C3	C6	N2	179.8°	121.5°
C3	C2	N1	H1	12.5°	0.2°
C2	C3	C4	H2	0.0°	57.9°
C2	C3	C6	H4	0.2°	57.9°
C3	C6	N2	H4	180.0°	179.5°
C6	C3	C2	O2	7.5°	127.9°
C6	C3	C4	H2	179.4°	180.0°
N2	C6	C3	H8	89.5°	122.6°
O2	C2	N1	H1	167.1°	179.7°
O2	C2	C3	H8	97.8°	116.1°
H1	N1	C1	H5	0.0°	119.8°
H1	N1	C1	H6	120.0°	120.2°
H1	N1	C1	H7	120.0°	0.2°
H2	C4	C5	H3	0.1°	0.3°
H2	C4	C3	H8	90.3°	58.0°
H4	C6	C3	H8	90.4°	58.0°
H5	C1	H6	H7	120.0°	120.0°

248942

PDB entries from 2026-02-11

PDB statistics

PDBj update info

Contact PDBj

numon