WPO
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C3P | C2P | doub | 1.31Å | 1.30Å | |
C2P | C1P | sing | 1.51Å | 1.48Å | |
C1P | O3P | sing | 1.43Å | 1.42Å | |
O1P | P | doub | 1.48Å | 1.48Å | |
O3P | P | sing | 1.61Å | 1.60Å | |
N6 | C6 | sing | 1.38Å | 1.33Å | |
N7 | C8 | doub | 1.30Å | 1.31Å | Aromatic |
N7 | C5 | sing | 1.35Å | 1.39Å | Aromatic |
P | O2P | sing | 1.61Å | 1.48Å | |
P | O5' | sing | 1.61Å | 1.60Å | |
C8 | N9 | sing | 1.36Å | 1.37Å | Aromatic |
C6 | C5 | doub | 1.40Å | 1.41Å | Aromatic |
C6 | N1 | sing | 1.33Å | 1.35Å | Aromatic |
C5 | C4 | sing | 1.40Å | 1.38Å | Aromatic |
O5' | C5' | sing | 1.43Å | 1.44Å | |
N1 | C2 | doub | 1.32Å | 1.34Å | Aromatic |
N9 | C4 | sing | 1.37Å | 1.37Å | Aromatic |
N9 | C1' | sing | 1.47Å | 1.46Å | |
C4 | N3 | doub | 1.33Å | 1.34Å | Aromatic |
O4' | C1' | sing | 1.44Å | 1.43Å | |
O4' | C4' | sing | 1.44Å | 1.45Å | |
C5' | C4' | sing | 1.53Å | 1.50Å | |
C1' | C2' | sing | 1.55Å | 1.53Å | |
C2 | N3 | sing | 1.32Å | 1.33Å | Aromatic |
C4' | C3' | sing | 1.54Å | 1.53Å | |
C2' | C3' | sing | 1.55Å | 1.53Å | |
C2' | O2' | sing | 1.43Å | 1.41Å | |
C3' | O3' | sing | 1.43Å | 1.42Å | |
O2' | H1 | sing | 0.97Å | 0.95Å | |
C2' | H2 | sing | 1.09Å | 1.10Å | |
C1' | H3 | sing | 1.09Å | 1.10Å | |
C4' | H4 | sing | 1.09Å | 1.10Å | |
C5' | H5 | sing | 1.09Å | 1.10Å | |
C5' | H6 | sing | 1.09Å | 1.10Å | |
O2P | H7 | sing | 0.97Å | 0.95Å | |
C1P | H8 | sing | 1.09Å | 1.10Å | |
C1P | H9 | sing | 1.09Å | 1.10Å | |
C2P | H10 | sing | 1.08Å | 1.08Å | |
C3P | H11 | sing | 1.08Å | 1.08Å | |
C3P | H12 | sing | 1.08Å | 1.08Å | |
C3' | H13 | sing | 1.09Å | 1.10Å | |
O3' | H14 | sing | 0.97Å | 0.95Å | |
C8 | H15 | sing | 1.08Å | 1.08Å | |
C2 | H16 | sing | 1.08Å | 1.08Å | |
N6 | H17 | sing | 0.97Å | 1.00Å | |
N6 | H18 | sing | 0.97Å | 1.00Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C3P | C2P | C1P | 124.6° | 120.0° |
C3P | C2P | H10 | 117.7° | 120.0° |
C2P | C3P | H11 | 120.0° | 120.0° |
C2P | C3P | H12 | 120.0° | 120.0° |
C2P | C1P | O3P | 107.3° | 109.5° |
C2P | C1P | H8 | 110.0° | 109.5° |
C2P | C1P | H9 | 110.0° | 109.4° |
C1P | C2P | H10 | 117.7° | 120.0° |
C1P | O3P | P | 119.8° | 123.0° |
O3P | C1P | H8 | 110.0° | 109.5° |
O3P | C1P | H9 | 110.0° | 109.5° |
O1P | P | O3P | 110.9° | 109.5° |
O1P | P | O2P | 120.4° | 109.5° |
O1P | P | O5' | 108.5° | 109.5° |
O3P | P | O2P | 108.6° | 109.4° |
O3P | P | O5' | 96.7° | 109.5° |
N6 | C6 | C5 | 124.0° | 120.8° |
N6 | C6 | N1 | 118.7° | 120.7° |
C6 | N6 | H17 | 109.5° | 120.0° |
C6 | N6 | H18 | 109.5° | 120.0° |
C8 | N7 | C5 | 103.9° | 109.5° |
N7 | C8 | N9 | 113.8° | 109.9° |
N7 | C8 | H15 | 123.1° | 125.0° |
N7 | C5 | C6 | 131.9° | 134.7° |
N7 | C5 | C4 | 110.6° | 107.1° |
O2P | P | O5' | 109.0° | 109.5° |
P | O2P | H7 | 109.5° | 114.0° |
P | O5' | C5' | 113.5° | 123.0° |
C8 | N9 | C4 | 105.8° | 107.5° |
C8 | N9 | C1' | 127.2° | 126.3° |
N9 | C8 | H15 | 123.1° | 125.1° |
C5 | C6 | N1 | 117.3° | 118.5° |
C6 | C5 | C4 | 117.4° | 118.2° |
C6 | N1 | C2 | 118.7° | 121.2° |
C5 | C4 | N9 | 105.9° | 106.0° |
C5 | C4 | N3 | 126.3° | 119.1° |
O5' | C5' | C4' | 109.7° | 109.5° |
O5' | C5' | H5 | 109.4° | 109.5° |
O5' | C5' | H6 | 109.4° | 109.5° |
N1 | C2 | N3 | 129.2° | 122.5° |
N1 | C2 | H16 | 115.4° | 118.8° |
C4 | N9 | C1' | 127.0° | 126.2° |
N9 | C4 | N3 | 127.8° | 134.9° |
N9 | C1' | O4' | 107.9° | 110.7° |
N9 | C1' | C2' | 113.9° | 110.6° |
N9 | C1' | H3 | 109.5° | 110.6° |
C4 | N3 | C2 | 111.1° | 120.6° |
C1' | O4' | C4' | 108.7° | 107.0° |
O4' | C1' | C2' | 106.8° | 103.4° |
O4' | C1' | H3 | 110.0° | 110.6° |
O4' | C4' | C5' | 110.7° | 109.8° |
O4' | C4' | C3' | 103.2° | 107.3° |
O4' | C4' | H4 | 109.8° | 109.9° |
C5' | C4' | C3' | 115.5° | 109.9° |
C5' | C4' | H4 | 108.9° | 110.0° |
C4' | C5' | H5 | 109.4° | 109.4° |
C4' | C5' | H6 | 109.4° | 109.5° |
C1' | C2' | C3' | 100.8° | 102.1° |
C1' | C2' | O2' | 110.2° | 110.9° |
C1' | C2' | H2 | 110.9° | 111.0° |
C2' | C1' | H3 | 108.6° | 110.7° |
N3 | C2 | H16 | 115.4° | 118.7° |
C4' | C3' | C2' | 99.6° | 104.2° |
C4' | C3' | O3' | 110.0° | 110.5° |
C3' | C4' | H4 | 108.6° | 109.9° |
C4' | C3' | H13 | 109.5° | 110.5° |
C3' | C2' | O2' | 110.8° | 110.9° |
C2' | C3' | O3' | 116.3° | 110.5° |
C3' | C2' | H2 | 110.9° | 110.9° |
C2' | C3' | H13 | 109.6° | 110.5° |
C2' | O2' | H1 | 109.5° | 114.0° |
O2' | C2' | H2 | 112.7° | 110.8° |
O3' | C3' | H13 | 111.1° | 110.5° |
C3' | O3' | H14 | 109.5° | 114.0° |
H5 | C5' | H6 | 109.5° | 109.5° |
H8 | C1P | H9 | 109.5° | 109.5° |
H11 | C3P | H12 | 120.0° | 119.9° |
H17 | N6 | H18 | 109.5° | 120.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C3P | C2P | C1P | H10 | 180.0° | 179.9° |
C3P | C2P | C1P | O3P | 55.0° | 135.0° |
C3P | C2P | C1P | H8 | 174.7° | 15.0° |
C3P | C2P | C1P | H9 | 64.6° | 105.0° |
C2P | C3P | H11 | H12 | 180.0° | 180.0° |
C2P | C1P | O3P | H8 | 119.6° | 120.0° |
C2P | C1P | O3P | H9 | 119.7° | 120.0° |
C2P | C1P | O3P | P | 154.9° | 180.0° |
C2P | C1P | H8 | H9 | 121.0° | 120.0° |
C1P | C2P | C3P | H11 | 180.0° | 0.0° |
C1P | C2P | C3P | H12 | 0.0° | 179.9° |
C1P | O3P | P | O1P | 83.3° | 54.9° |
C1P | O3P | P | O2P | 51.2° | 65.0° |
C1P | O3P | P | O5' | 163.9° | 175.0° |
O3P | C1P | H8 | H9 | 121.0° | 120.0° |
O3P | C1P | C2P | H10 | 125.0° | 44.9° |
O1P | P | O3P | O2P | 134.5° | 120.0° |
O1P | P | O3P | O5' | 112.8° | 120.0° |
O1P | P | O2P | O5' | 126.3° | 120.1° |
O1P | P | O5' | C5' | 171.1° | 55.0° |
O1P | P | O2P | H7 | 0.0° | 180.0° |
O3P | P | O2P | O5' | 104.3° | 120.0° |
O3P | P | O5' | C5' | 56.3° | 175.0° |
O3P | P | O2P | H7 | 129.4° | 60.0° |
P | O3P | C1P | H8 | 35.3° | 60.0° |
P | O3P | C1P | H9 | 85.4° | 60.1° |
N6 | C6 | C5 | N7 | 0.1° | 0.0° |
N6 | C6 | C5 | N1 | 179.7° | 179.9° |
N6 | C6 | C5 | C4 | 180.0° | 180.0° |
N6 | C6 | N1 | C2 | 180.0° | 179.7° |
C6 | N6 | H17 | H18 | 120.0° | 180.0° |
N7 | C8 | N9 | H15 | 180.0° | 180.0° |
C8 | N7 | C5 | C6 | 180.0° | 180.0° |
C8 | N7 | C5 | C4 | 0.1° | 0.0° |
N7 | C8 | N9 | C4 | 0.2° | 0.0° |
N7 | C8 | N9 | C1' | 180.0° | 179.8° |
C5 | N7 | C8 | N9 | 0.1° | 0.0° |
N7 | C5 | C6 | C4 | 179.9° | 180.0° |
N7 | C5 | C6 | N1 | 179.9° | 179.9° |
N7 | C5 | C4 | N9 | 0.0° | 0.0° |
N7 | C5 | C4 | N3 | 180.0° | 179.8° |
C5 | N7 | C8 | H15 | 179.9° | 180.0° |
O2P | P | O5' | C5' | 56.0° | 65.0° |
P | O5' | C5' | C4' | 160.8° | 180.0° |
P | O5' | C5' | H5 | 40.8° | 60.0° |
P | O5' | C5' | H6 | 79.2° | 60.0° |
O5' | P | O2P | H7 | 126.2° | 60.0° |
C8 | N9 | C4 | C5 | 0.1° | 0.0° |
C8 | N9 | C4 | C1' | 179.9° | 179.8° |
C8 | N9 | C4 | N3 | 179.9° | 179.7° |
C8 | N9 | C1' | O4' | 8.2° | 19.4° |
C8 | N9 | C1' | C2' | 110.2° | 94.7° |
C8 | N9 | C1' | H3 | 128.0° | 142.3° |
C5 | C6 | N1 | C2 | 0.2° | 0.4° |
C6 | C5 | C4 | N9 | 179.9° | 180.0° |
C6 | C5 | C4 | N3 | 0.1° | 0.2° |
C5 | C6 | N6 | H17 | 179.7° | 0.0° |
C5 | C6 | N6 | H18 | 60.2° | 180.0° |
N1 | C6 | C5 | C4 | 0.2° | 0.1° |
C6 | N1 | C2 | N3 | 0.0° | 0.3° |
C6 | N1 | C2 | H16 | 180.0° | 179.7° |
N1 | C6 | N6 | H17 | 0.0° | 179.8° |
N1 | C6 | N6 | H18 | 120.0° | 0.1° |
C5 | C4 | N9 | N3 | 180.0° | 179.7° |
C5 | C4 | N9 | C1' | 180.0° | 179.8° |
C5 | C4 | N3 | C2 | 0.1° | 0.3° |
O5' | C5' | C4' | O4' | 70.5° | 66.5° |
O5' | C5' | C4' | H5 | 120.0° | 120.0° |
O5' | C5' | C4' | H6 | 120.1° | 120.1° |
O5' | C5' | C4' | C3' | 172.8° | 175.7° |
O5' | C5' | C4' | H4 | 50.3° | 54.6° |
O5' | C5' | H5 | H6 | 119.9° | 120.1° |
N1 | C2 | N3 | C4 | 0.1° | 0.0° |
N1 | C2 | N3 | H16 | 180.0° | 180.0° |
C4 | N9 | C1' | O4' | 172.0° | 160.9° |
C4 | N9 | C1' | C2' | 69.7° | 85.1° |
N9 | C4 | N3 | C2 | 179.9° | 179.9° |
C4 | N9 | C1' | H3 | 52.2° | 37.9° |
C4 | N9 | C8 | H15 | 179.8° | 180.0° |
C1' | N9 | C4 | N3 | 0.0° | 0.1° |
N9 | C1' | O4' | C2' | 122.9° | 118.5° |
N9 | C1' | O4' | H3 | 119.4° | 122.9° |
N9 | C1' | O4' | C4' | 122.8° | 158.6° |
N9 | C1' | C2' | H3 | 122.3° | 122.9° |
N9 | C1' | C2' | C3' | 91.8° | 155.6° |
N9 | C1' | C2' | O2' | 151.2° | 86.2° |
N9 | C1' | C2' | H2 | 25.7° | 37.4° |
C1' | N9 | C8 | H15 | 0.1° | 0.2° |
C4 | N3 | C2 | H16 | 179.9° | 180.0° |
C1' | O4' | C4' | C5' | 151.6° | 146.0° |
O4' | C1' | C2' | H3 | 118.6° | 118.5° |
C1' | O4' | C4' | C3' | 27.5° | 26.6° |
O4' | C1' | C2' | C3' | 27.3° | 37.1° |
O4' | C1' | C2' | O2' | 89.8° | 155.3° |
O4' | C1' | C2' | H2 | 144.7° | 81.1° |
C1' | O4' | C4' | H4 | 88.2° | 92.9° |
O4' | C4' | C5' | C3' | 116.8° | 117.8° |
O4' | C4' | C5' | H4 | 120.8° | 121.1° |
C4' | O4' | C1' | C2' | 0.0° | 40.1° |
O4' | C4' | C3' | H4 | 116.5° | 119.4° |
O4' | C4' | C3' | C2' | 43.3° | 2.1° |
O4' | C4' | C3' | O3' | 166.0° | 120.7° |
C4' | O4' | C1' | H3 | 117.7° | 78.4° |
O4' | C4' | C5' | H5 | 49.5° | 173.5° |
O4' | C4' | C5' | H6 | 169.5° | 53.6° |
O4' | C4' | C3' | H13 | 71.6° | 116.7° |
C5' | C4' | C3' | H4 | 122.6° | 121.2° |
C5' | C4' | C3' | C2' | 164.3° | 121.5° |
C5' | C4' | C3' | O3' | 73.0° | 119.9° |
C4' | C5' | H5 | H6 | 119.9° | 120.0° |
C5' | C4' | C3' | H13 | 49.4° | 2.7° |
C1' | C2' | C3' | C4' | 42.1° | 20.9° |
C1' | C2' | C3' | O2' | 116.7° | 118.2° |
C1' | C2' | C3' | H2 | 117.5° | 118.3° |
C1' | C2' | O2' | H2 | 124.5° | 123.7° |
C1' | C2' | C3' | O3' | 160.1° | 97.7° |
C1' | C2' | O2' | H1 | 180.0° | 174.2° |
C1' | C2' | C3' | H13 | 72.8° | 139.6° |
C4' | C3' | C2' | O3' | 118.1° | 118.6° |
C4' | C3' | C2' | H13 | 114.9° | 118.7° |
C4' | C3' | C2' | O2' | 74.6° | 139.1° |
C4' | C3' | O3' | H13 | 121.5° | 122.6° |
C4' | C3' | C2' | H2 | 159.5° | 97.4° |
C3' | C4' | C5' | H5 | 67.2° | 55.7° |
C3' | C4' | C5' | H6 | 52.7° | 64.2° |
C4' | C3' | O3' | H14 | 180.0° | 176.2° |
C3' | C2' | O2' | H2 | 124.9° | 123.6° |
C2' | C3' | O3' | H13 | 126.3° | 122.7° |
C3' | C2' | O2' | H1 | 69.3° | 61.5° |
C3' | C2' | C1' | H3 | 145.9° | 81.5° |
C2' | C3' | C4' | H4 | 73.1° | 117.4° |
C2' | C3' | O3' | H14 | 67.8° | 61.5° |
O2' | C2' | C3' | O3' | 43.5° | 20.4° |
O2' | C2' | C1' | H3 | 28.8° | 36.7° |
O2' | C2' | C3' | H13 | 170.5° | 102.2° |
O3' | C3' | C2' | H2 | 82.4° | 144.0° |
O3' | C3' | C4' | H4 | 49.6° | 1.3° |
H1 | O2' | C2' | H2 | 55.5° | 62.1° |
H2 | C2' | C1' | H3 | 96.6° | 160.3° |
H2 | C2' | C3' | H13 | 44.7° | 21.3° |
H4 | C4' | C5' | H5 | 170.3° | 65.4° |
H4 | C4' | C5' | H6 | 69.7° | 174.6° |
H4 | C4' | C3' | H13 | 172.0° | 123.9° |
H8 | C1P | C2P | H10 | 5.3° | 164.9° |
H9 | C1P | C2P | H10 | 115.4° | 75.1° |
H10 | C2P | C3P | H11 | 0.0° | 180.0° |
H10 | C2P | C3P | H12 | 180.0° | 0.0° |
H13 | C3' | O3' | H14 | 58.5° | 61.2° |