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WMP

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CAPOAUsing1.44Å1.45Å
CAPCBCsing1.51Å1.54Å
OAUBAsing1.37Å1.44Å
CBCCALdoub1.38Å1.39ÅAromatic
CBCCBDsing1.39Å1.36ÅAromatic
CALCAKsing1.38Å1.38ÅAromatic
N6C6sing1.38Å1.46Å
BAO2'sing1.39Å1.50Å
BACBDsing1.55Å1.61Å
BAO3'sing1.39Å1.51Å
N7C5sing1.36Å1.35ÅAromatic
N7C8doub1.30Å1.33ÅAromatic
O2'C2'sing1.41Å1.40Å
C6C5doub1.41Å1.40ÅAromatic
C6N1sing1.33Å1.34ÅAromatic
C5C4sing1.41Å1.40ÅAromatic
C8N9sing1.36Å1.35ÅAromatic
N1C2doub1.32Å1.34ÅAromatic
C2'C1'sing1.51Å1.53Å
C2'C3'sing1.59Å1.49Å
CBDCANdoub1.38Å1.42ÅAromatic
N9C4sing1.37Å1.34ÅAromatic
N9C1'sing1.47Å1.49Å
C4N3doub1.33Å1.34ÅAromatic
O3'C3'sing1.39Å1.40Å
CAKCBBdoub1.38Å1.39ÅAromatic
C2N3sing1.32Å1.33ÅAromatic
C1'O4'sing1.46Å1.43Å
C3'C4'sing1.49Å1.41Å
CANCBBsing1.38Å1.40ÅAromatic
CBBCBGsing1.51Å1.51Å
C4'O4'sing1.46Å1.61Å
C4'C5'sing1.53Å1.38Å
CBGOABsing1.43Å1.41Å
CBGCBAsing1.51Å1.51Å
C5'O5'sing1.43Å1.38Å
CBACAJdoub1.38Å1.40ÅAromatic
CBACAIsing1.38Å1.39ÅAromatic
CAJCAHsing1.38Å1.39ÅAromatic
O5'PBMsing1.61Å1.55Å
CAICAGdoub1.38Å1.39ÅAromatic
CAHCAFdoub1.38Å1.38ÅAromatic
OADPBMdoub1.48Å1.49Å
CAGCAFsing1.38Å1.39ÅAromatic
PBMOACsing1.61Å1.50Å
PBMOAEsing1.61Å1.54Å
CAIH1sing1.08Å1.08Å
CAGH2sing1.08Å1.08Å
CAFH3sing1.08Å1.08Å
CAHH4sing1.08Å1.08Å
CAJH5sing1.08Å1.08Å
CBGH6sing1.09Å1.10Å
OABH7sing0.97Å0.95Å
CANH8sing1.08Å1.08Å
CAKH9sing1.08Å1.08Å
CALH10sing1.08Å1.08Å
CAPH11sing1.09Å1.10Å
CAPH12sing1.09Å1.10Å
C2'H13sing1.09Å1.10Å
C3'H14sing1.09Å1.10Å
C4'H15sing1.09Å1.10Å
C5'H16sing1.09Å1.10Å
C5'H17sing1.09Å1.10Å
OAEH18sing0.97Å0.95Å
OACH19sing0.97Å0.95Å
C1'H20sing1.09Å1.10Å
C8H21sing1.08Å1.08Å
C2H22sing1.08Å1.08Å
N6H23sing0.97Å1.00Å
N6H24sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
OAUCAPCBC107.0°106.5°
CAPOAUBA108.1°106.2°
OAUCAPH11110.1°110.0°
OAUCAPH12110.1°110.1°
CAPCBCCAL129.7°133.6°
CAPCBCCBD108.4°106.3°
CBCCAPH11110.1°110.4°
CBCCAPH12110.1°109.7°
OAUBAO2'119.8°109.7°
OAUBACBD105.4°106.8°
OAUBAO3'106.2°109.9°
CALCBCCBD121.6°120.1°
CBCCALCAK120.2°119.9°
CBCCALH10119.9°120.1°
CBCCBDBA107.7°106.0°
CBCCBDCAN118.1°120.1°
CALCAKCBB119.7°120.1°
CALCAKH9120.1°120.0°
CAKCALH10119.9°120.1°
N6C6C5122.4°120.7°
N6C6N1117.8°120.8°
C6N6H23109.5°120.0°
C6N6H24109.5°120.0°
O2'BACBD99.3°109.2°
O2'BAO3'105.3°110.8°
BAO2'C2'104.4°102.4°
CBDBAO3'121.9°110.2°
BACBDCAN133.6°133.9°
BAO3'C3'100.8°104.4°
C5N7C8108.5°109.5°
N7C5C6134.9°134.7°
N7C5C4106.6°107.1°
N7C8N9109.2°109.9°
N7C8H21125.4°125.0°
O2'C2'C1'132.1°125.1°
O2'C2'C3'99.7°96.4°
O2'C2'H13106.1°111.4°
C5C6N1119.8°118.5°
C6C5C4118.4°118.2°
C6N1C2119.8°121.2°
C5C4N9107.4°106.0°
C5C4N3119.2°119.0°
C8N9C4107.9°107.5°
C8N9C1'128.3°126.3°
N9C8H21125.4°125.0°
N1C2N3122.1°122.4°
N1C2H22119.0°118.7°
C1'C2'C3'106.7°97.2°
C2'C1'N9120.7°110.7°
C2'C1'O4'100.2°103.0°
C1'C2'H13104.7°111.4°
C2'C1'H20106.1°110.7°
C2'C3'O3'103.8°99.3°
C2'C3'C4'104.2°100.2°
C3'C2'H13105.0°113.0°
C2'C3'H14100.3°106.6°
CBDCANCBB120.3°119.8°
CBDCANH8119.9°120.1°
C4N9C1'123.2°126.3°
N9C4N3133.3°135.0°
N9C1'O4'115.0°110.7°
N9C1'H20106.5°110.7°
C4N3C2120.5°120.7°
O3'C3'C4'140.4°131.7°
O3'C3'H14101.0°108.2°
CAKCBBCAN119.7°120.1°
CAKCBBCBG117.4°119.9°
CBBCAKH9120.2°120.0°
N3C2H22119.0°118.9°
C1'O4'C4'99.5°108.9°
O4'C1'H20107.4°110.8°
C3'C4'O4'97.2°105.3°
C3'C4'C5'117.7°110.3°
C4'C3'H14100.9°107.8°
C3'C4'H15111.0°110.3°
CANCBBCBG122.8°120.0°
CBBCANH8119.9°120.1°
CBBCBGOAB113.9°109.5°
CBBCBGCBA116.2°109.5°
CBBCBGH6106.2°109.5°
O4'C4'C5'109.9°110.3°
O4'C4'H15108.4°110.2°
C4'C5'O5'115.7°109.5°
C5'C4'H15111.6°110.3°
C4'C5'H16107.9°109.5°
C4'C5'H17107.9°109.5°
OABCBGCBA106.2°109.5°
OABCBGH6107.5°109.4°
CBGOABH7109.5°114.0°
CBGCBACAJ121.1°120.0°
CBGCBACAI119.5°120.0°
CBACBGH6106.3°109.4°
C5'O5'PBM120.8°123.0°
O5'C5'H16107.9°109.5°
O5'C5'H17107.9°109.5°
CAJCBACAI119.4°119.9°
CBACAJCAH120.2°120.0°
CBACAJH5119.9°119.9°
CBACAICAG120.3°120.1°
CBACAIH1119.9°119.9°
CAJCAHCAF120.4°120.0°
CAJCAHH4119.8°120.0°
CAHCAJH5119.9°120.1°
O5'PBMOAD107.3°109.4°
O5'PBMOAC109.8°109.4°
O5'PBMOAE107.4°109.5°
CAICAGCAF120.1°120.0°
CAGCAIH1119.9°120.0°
CAICAGH2120.0°120.0°
CAHCAFCAG119.7°120.0°
CAHCAFH3120.2°120.0°
CAFCAHH4119.8°120.0°
OADPBMOAC112.0°109.5°
OADPBMOAE108.1°109.5°
CAFCAGH2120.0°120.0°
CAGCAFH3120.1°120.0°
OACPBMOAE112.1°109.5°
PBMOACH19109.5°114.0°
PBMOAEH18109.5°114.0°
H11CAPH12109.5°110.1°
H16C5'H17109.5°109.5°
H23N6H24109.5°119.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OAUCAPCBCH11119.6°119.4°
OAUCAPCBCH12119.6°119.1°
OAUCAPCBCCAL170.5°162.7°
OAUCAPCBCCBD15.9°17.4°
CAPOAUBAO2'95.4°90.6°
CAPOAUBACBD15.1°27.7°
CAPOAUBAO3'145.7°147.3°
OAUCAPH11H12121.2°121.5°
CBCCAPOAUBA19.1°28.5°
CAPCBCCALCBD172.9°179.8°
CAPCBCCALCAK176.9°179.2°
CAPCBCCBDBA6.3°0.9°
CAPCBCCBDCAN178.9°179.2°
CAPCBCCALH103.0°0.8°
CBCCAPH11H12121.2°121.3°
OAUBACBDCBC5.2°16.8°
OAUBAO2'CBD113.8°116.8°
OAUBAO2'O3'119.4°121.6°
OAUBACBDO3'120.8°119.4°
OAUBAO2'C2'105.6°95.6°
OAUBACBDCAN165.8°163.0°
OAUBAO3'C3'146.4°130.1°
BAOAUCAPH11100.5°148.1°
BAOAUCAPH12138.7°90.4°
CBCCALCAKH10180.0°180.0°
CALCBCCBDBA179.4°179.2°
CALCBCCBDCAN6.8°0.6°
CBCCALCAKCBB0.0°0.0°
CBCCALCAKH9180.0°180.0°
CALCBCCAPH1169.9°43.3°
CALCBCCAPH1250.9°78.1°
CBDCBCCALCAK4.1°0.6°
CBCCBDBAO2'119.4°101.8°
CBCCBDBACAN171.0°179.8°
CBCCBDBAO3'126.0°136.2°
CBCCBDCANCBB5.8°0.2°
CBCCBDCANH8174.2°179.7°
CBDCBCCALH10175.9°179.4°
CBDCBCCAPH11103.7°136.8°
CBDCBCCAPH12135.5°101.7°
CALCAKCBBH9180.0°179.9°
CALCAKCBBCAN0.9°0.4°
CALCAKCBBCBG179.1°179.8°
N6C6C5N73.3°0.0°
N6C6C5N1178.5°179.8°
N6C6C5C4178.7°180.0°
N6C6N1C2178.2°179.8°
C6N6H23H24120.0°180.0°
O2'BACBDO3'114.6°122.0°
BAO2'C2'C1'161.2°147.6°
BAO2'C2'C3'38.1°44.1°
O2'BACBDCAN69.6°78.4°
O2'BAO3'C3'18.3°8.7°
BAO2'C2'H1370.8°73.6°
CBDBAO2'C2'140.6°147.6°
CBDBAO3'C3'93.2°112.4°
BACBDCANCBB176.1°179.6°
BACBDCANH83.9°0.4°
O3'BAO2'C2'13.8°25.9°
BAO3'C3'C2'42.3°35.1°
O3'BACBDCAN45.0°43.6°
BAO3'C3'C4'176.1°147.8°
BAO3'C3'H1461.3°75.8°
N7C5C6C4175.4°180.0°
N7C5C6N1178.2°179.9°
C5N7C8N95.0°0.0°
N7C5C4N92.0°0.0°
N7C5C4N3178.5°179.8°
C5N7C8H21175.0°180.0°
C8N7C5C6177.6°180.0°
C8N7C5C41.8°0.0°
N7C8N9H21180.0°179.9°
N7C8N9C46.2°0.0°
N7C8N9C1'177.1°179.8°
O2'C2'C1'C3'120.5°103.1°
O2'C2'C1'H13128.5°138.8°
O2'C2'C3'H13109.7°116.5°
O2'C2'C1'N9133.2°93.8°
O2'C2'C3'O3'52.6°50.0°
O2'C2'C1'O4'99.4°147.8°
O2'C2'C3'C4'155.8°174.5°
O2'C2'C3'H1451.6°62.3°
O2'C2'C1'H2012.1°29.4°
C5C6N1C20.4°0.4°
C6C5C4N9174.7°180.0°
C6C5C4N31.9°0.2°
C5C6N6H23178.6°0.0°
C5C6N6H2458.5°180.0°
N1C6C5C42.8°0.1°
C6N1C2N34.6°0.3°
C6N1C2H22175.4°179.6°
N1C6N6H230.0°179.8°
N1C6N6H24120.0°0.2°
C5C4N9C85.0°0.0°
C5C4N9N3175.8°179.8°
C5C4N9C1'176.4°179.7°
C5C4N3C22.2°0.2°
C8N9C1'C2'39.3°94.7°
C8N9C4C1'171.4°179.8°
C8N9C4N3179.2°179.8°
C8N9C1'O4'81.0°18.9°
C8N9C1'H20160.2°142.1°
N1C2N3C45.6°0.0°
N1C2N3H22180.0°180.0°
C1'C2'C3'H13110.7°116.9°
C2'C1'N9C4151.1°85.0°
C2'C1'N9O4'120.3°113.6°
C2'C1'N9H20120.9°123.2°
C1'C2'C3'O3'167.9°176.6°
C2'C1'O4'H20110.6°118.4°
C1'C2'C3'C4'16.2°47.9°
C2'C1'O4'C4'45.4°26.0°
C1'C2'C3'H1488.0°64.3°
C3'C2'C1'N9106.3°163.1°
C2'C3'O3'C4'133.8°112.6°
C2'C3'O3'H14103.6°111.0°
C3'C2'C1'O4'21.1°44.7°
C2'C3'C4'H14103.7°111.2°
C2'C3'C4'O4'42.0°33.8°
C2'C3'C4'C5'159.0°152.8°
C2'C3'C4'H1570.9°85.1°
C3'C2'C1'H20132.7°73.7°
CBDCANCBBCAK2.0°0.4°
CBDCANCBBH8180.0°179.9°
CBDCANCBBCBG176.1°179.9°
N9C4N3C2177.6°180.0°
C4N9C1'O4'88.6°161.4°
C4N9C1'H2030.2°38.2°
C4N9C8H21173.8°180.0°
C1'N9C4N37.8°0.0°
N9C1'O4'H20118.4°123.2°
N9C1'O4'C4'85.6°144.4°
N9C1'C2'H134.7°44.9°
C1'N9C8H212.9°0.3°
C4N3C2H22174.5°180.0°
O3'C3'C4'H14122.6°136.5°
O3'C3'C4'O4'175.7°146.0°
O3'C3'C4'C5'67.3°95.0°
O3'C3'C2'H1357.1°66.5°
O3'C3'C4'H1562.9°27.1°
CAKCBBCANCBG178.2°179.8°
CAKCBBCBGOAB139.3°39.8°
CAKCBBCBGCBA96.7°80.3°
CAKCBBCBGH621.2°159.7°
CAKCBBCANH8178.0°179.7°
CBBCAKCALH10179.9°179.9°
C1'O4'C4'C3'57.1°6.0°
C1'O4'C4'C5'180.0°125.0°
O4'C1'C2'H13132.1°73.4°
C1'O4'C4'H1557.9°112.9°
C3'C4'O4'C5'122.9°119.0°
C3'C4'O4'H15114.9°119.0°
C3'C4'C5'H15129.9°122.1°
C3'C4'C5'O5'137.9°175.0°
C4'C3'C2'H1394.5°69.0°
C3'C4'C5'H1616.9°65.0°
C3'C4'C5'H17101.2°55.0°
CANCBBCBGOAB38.9°140.0°
CANCBBCBGCBA85.1°100.0°
CANCBBCBGH6157.0°20.0°
CANCBBCAKH9179.1°179.5°
CBBCBGOABCBA129.2°120.1°
CBBCBGOABH6117.4°120.0°
CBBCBGCBAH6117.9°120.0°
CBBCBGCBACAJ48.0°95.0°
CBBCBGCBACAI132.6°84.4°
CBBCBGOABH7180.0°60.0°
CBGCBBCANH83.8°0.0°
CBGCBBCAKH90.9°0.3°
O4'C4'C5'H15120.2°122.0°
O4'C4'C5'O5'28.0°69.1°
O4'C4'C3'H1461.8°77.4°
O4'C4'C5'H1692.9°50.9°
O4'C4'C5'H17148.9°170.9°
C4'O4'C1'H20156.0°92.4°
C4'C5'O5'H16120.9°120.0°
C4'C5'O5'H17120.9°120.0°
C4'C5'O5'PBM156.2°180.0°
C5'C4'C3'H1455.2°41.5°
C4'C5'H16H17117.2°120.0°
OABCBGCBAH6114.2°120.0°
OABCBGCBACAJ79.9°145.0°
OABCBGCBACAI99.5°35.6°
CBGCBACAJCAI179.4°179.4°
CBGCBACAJCAH179.5°180.0°
CBGCBACAICAG179.4°180.0°
CBGCBACAIH10.5°0.3°
CBGCBACAJH50.5°0.3°
CBACBGOABH750.8°60.0°
C5'O5'PBMOAD64.7°55.0°
C5'O5'PBMOAC57.2°65.0°
C5'O5'PBMOAE179.3°175.0°
O5'C5'C4'H1592.2°52.9°
O5'C5'H16H17117.2°120.0°
CBACAJCAHH5180.0°179.7°
CAJCBACAICAG0.1°0.6°
CBACAJCAHCAF0.0°0.3°
CAJCBACAIH1179.9°179.7°
CBACAJCAHH4180.0°179.8°
CAJCBACBGH6165.9°25.0°
CAICBACAJCAH0.1°0.6°
CBACAICAGH1180.0°179.7°
CBACAICAGCAF0.1°0.3°
CBACAICAGH2180.0°179.7°
CAICBACAJH5179.9°179.7°
CAICBACBGH614.7°155.6°
CAJCAHCAFH4180.0°179.9°
CAJCAHCAFCAG0.1°0.0°
CAJCAHCAFH3179.9°179.9°
O5'PBMOADOAC120.5°119.9°
O5'PBMOADOAE115.5°120.0°
O5'PBMOACOAE119.2°120.0°
PBMO5'C5'H1682.9°60.0°
PBMO5'C5'H1735.3°60.0°
O5'PBMOAEH18115.5°180.0°
O5'PBMOACH19119.1°60.0°
CAICAGCAFCAH0.1°0.0°
CAICAGCAFH2180.0°180.0°
CAICAGCAFH3179.9°179.9°
CAHCAFCAGH3180.0°179.9°
CAHCAFCAGH2179.9°180.0°
CAFCAHCAJH5180.0°180.0°
OADPBMOACOAE121.7°120.1°
OADPBMOAEH180.0°60.1°
OADPBMOACH190.0°180.0°
CAFCAGCAIH1180.0°180.0°
CAGCAFCAHH4179.9°179.9°
OACPBMOAEH18123.9°60.0°
OAEPBMOACH19121.7°60.0°
H1CAICAGH20.0°0.1°
H2CAGCAFH30.1°0.1°
H3CAFCAHH40.1°0.0°
H4CAHCAJH50.0°0.1°
H6CBGOABH762.6°180.0°
H9CAKCALH100.1°0.0°
H13C2'C3'H14161.3°178.8°
H13C2'C1'H20116.4°168.1°
H14C3'C4'H15174.6°163.7°
H15C4'C5'H16146.8°172.9°
H15C4'C5'H1728.7°67.1°

224931

PDB entries from 2024-09-11

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