English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

WLX

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N1	C2	doub	1.33Å	1.36Å	Aromatic
C2	C3	sing	1.38Å	1.39Å	Aromatic
C3	C4	doub	1.40Å	1.35Å	Aromatic
N1	C5	sing	1.31Å	1.38Å	Aromatic
C4	C6	sing	1.42Å	1.38Å	Aromatic
C5	C6	doub	1.40Å	1.39Å	Aromatic
C2	N7	sing	1.39Å	1.41Å
C4	C8	sing	1.40Å	1.40Å	Aromatic
C6	C9	sing	1.40Å	1.38Å	Aromatic
C8	C10	doub	1.36Å	1.38Å	Aromatic
C9	C11	doub	1.36Å	1.37Å	Aromatic
C10	C11	sing	1.39Å	1.37Å	Aromatic
C10	H18	sing	1.08Å	1.08Å
C11	H19	sing	1.08Å	1.08Å
C3	H12	sing	1.08Å	1.08Å
C5	H13	sing	1.08Å	1.08Å
N7	H15	sing	0.97Å	1.00Å
N7	H14	sing	0.97Å	1.00Å
C8	H16	sing	1.08Å	1.08Å
C9	H17	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N1	C2	C3	121.8°	121.5°
C2	N1	C5	119.2°	122.7°
N1	C2	N7	119.3°	119.2°
C2	C3	C4	119.2°	118.5°
C3	C2	N7	118.8°	119.3°
C2	C3	H12	120.4°	120.7°
C3	C4	C6	119.8°	118.3°
C3	C4	C8	119.0°	122.1°
C4	C3	H12	120.4°	120.8°
N1	C5	C6	118.9°	120.1°
N1	C5	H13	120.6°	120.0°
C4	C6	C5	121.0°	118.8°
C6	C4	C8	121.1°	119.6°
C4	C6	C9	119.6°	119.2°
C5	C6	C9	119.4°	121.9°
C6	C5	H13	120.5°	119.9°
C2	N7	H15	109.5°	120.0°
C2	N7	H14	109.5°	120.0°
C4	C8	C10	117.9°	119.4°
C4	C8	H16	121.1°	120.3°
C6	C9	C11	119.3°	119.6°
C6	C9	H17	120.3°	120.2°
C8	C10	C11	120.8°	121.0°
C8	C10	H18	119.6°	119.4°
C10	C8	H16	121.0°	120.3°
C9	C11	C10	121.2°	121.1°
C9	C11	H19	119.4°	119.5°
C11	C9	H17	120.4°	120.2°
C11	C10	H18	119.6°	119.5°
C10	C11	H19	119.3°	119.4°
H15	N7	H14	109.4°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N1	C2	C3	N7	179.3°	180.0°
N1	C2	C3	C4	1.5°	0.0°
C2	N1	C5	C6	1.5°	0.1°
N1	C2	C3	H12	178.5°	180.0°
C2	N1	C5	H13	178.5°	180.0°
N1	C2	N7	H15	0.0°	0.1°
N1	C2	N7	H14	120.0°	180.0°
C2	C3	C4	H12	180.0°	179.9°
C3	C2	N1	C5	0.6°	0.0°
C2	C3	C4	C6	2.8°	0.0°
C2	C3	C4	C8	179.2°	179.2°
C3	C2	N7	H15	179.3°	179.9°
C3	C2	N7	H14	59.3°	0.0°
C3	C4	C6	C8	178.0°	179.2°
C3	C4	C6	C5	1.9°	0.1°
C4	C3	C2	N7	179.2°	180.0°
C3	C4	C6	C9	179.2°	180.0°
C3	C4	C8	C10	177.8°	179.7°
C3	C4	C8	H16	2.2°	0.3°
N1	C5	C6	C4	0.3°	0.1°
N1	C5	C6	H13	180.0°	180.0°
C5	N1	C2	N7	178.6°	180.0°
N1	C5	C6	C9	178.6°	180.0°
C4	C6	C5	C9	178.9°	179.9°
C6	C4	C8	C10	0.2°	0.5°
C4	C6	C9	C11	1.7°	0.5°
C6	C4	C3	H12	177.3°	179.9°
C4	C6	C5	H13	179.7°	179.9°
C6	C4	C8	H16	179.8°	179.5°
C4	C6	C9	H17	178.2°	179.9°
C5	C6	C4	C8	179.9°	179.2°
C5	C6	C9	C11	179.4°	179.4°
C5	C6	C9	H17	0.6°	0.0°
N7	C2	C3	H12	0.8°	0.1°
C2	N7	H15	H14	120.0°	180.0°
C8	C4	C6	C9	1.2°	0.7°
C4	C8	C10	H16	180.0°	180.0°
C4	C8	C10	C11	1.2°	0.0°
C4	C8	C10	H18	178.7°	179.8°
C8	C4	C3	H12	0.8°	0.9°
C6	C9	C11	H17	180.0°	179.5°
C6	C9	C11	C10	0.8°	0.0°
C6	C9	C11	H19	179.2°	180.0°
C9	C6	C5	H13	1.4°	0.0°
C8	C10	C11	C9	0.7°	0.3°
C8	C10	C11	H18	180.0°	179.8°
C8	C10	C11	H19	179.3°	179.7°
C9	C11	C10	H19	180.0°	180.0°
C9	C11	C10	H18	179.2°	179.9°
C11	C10	C8	H16	178.8°	180.0°
C10	C11	C9	H17	179.2°	179.4°
H18	C10	C11	H19	0.8°	0.0°
H18	C10	C8	H16	1.3°	0.2°
H19	C11	C9	H17	0.8°	0.5°

222926

PDB entries from 2024-07-24

PDB statistics

PDBj update info

Contact PDBj

numon