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SummaryGeometryRelated PDB entries

WDI

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C01C02sing1.51Å1.51Å
C01C03sing1.53Å1.50Å
C01C04sing1.53Å1.50Å
C02C05doub1.38Å1.39ÅAromatic
C02C06sing1.38Å1.39ÅAromatic
C03C07sing1.50Å1.49Å
C04C08sing1.51Å1.48Å
C05C09sing1.38Å1.40ÅAromatic
C06C10doub1.38Å1.38ÅAromatic
C07C11doub1.34Å1.36Å
C08C11sing1.40Å1.48Å
C07O12sing1.35Å1.36Å
C08O13doub1.22Å1.22Å
C09C14doub1.38Å1.38ÅAromatic
C10C14sing1.38Å1.38ÅAromatic
C14C16sing1.51Å1.50Å
C16F19sing1.40Å1.34Å
C16F20sing1.40Å1.32Å
C16F21sing1.40Å1.35Å
C01H22sing1.09Å1.10Å
C04H25sing1.09Å1.10Å
C04H26sing1.09Å1.10Å
C05H27sing1.08Å1.08Å
C06H28sing1.08Å1.08Å
C10H30sing1.08Å1.08Å
C11H31sing1.08Å1.08Å
O12H1sing0.97Å0.95Å
C03H24sing1.09Å1.10Å
C03H23sing1.09Å1.10Å
C09H29sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C02C01C03108.7°109.6°
C02C01C04111.9°109.6°
C01C02C05119.1°120.1°
C01C02C06124.1°120.0°
C02C01H22108.1°109.5°
C03C01C04111.6°108.9°
C01C03C07118.0°109.5°
C03C01H22108.2°109.6°
C01C03H24107.3°109.5°
C01C03H23107.3°109.4°
C01C04C08114.8°109.1°
C04C01H22108.2°109.7°
C01C04H25108.1°109.5°
C01C04H26108.1°109.6°
C05C02C06116.7°120.0°
C02C05C09122.3°120.0°
C02C05H27118.8°120.0°
C02C06C10121.1°120.0°
C02C06H28119.4°120.0°
C03C07C11121.9°121.2°
C03C07O12116.2°119.4°
C07C03H24107.3°109.5°
C07C03H23107.3°109.5°
C04C08C11119.7°120.6°
C04C08O13120.3°119.7°
C08C04H25108.1°109.5°
C08C04H26108.1°109.6°
C05C09C14119.5°120.0°
C09C05H27118.8°120.0°
C05C09H29120.2°120.0°
C06C10C14121.6°120.0°
C10C06H28119.4°120.0°
C06C10H30119.2°120.0°
C07C11C08119.0°121.7°
C11C07O12121.8°119.4°
C07C11H31120.5°119.1°
C11C08O13120.0°119.8°
C08C11H31120.5°119.2°
C07O12H1109.5°117.1°
C09C14C10118.6°120.0°
C09C14C16126.1°120.0°
C14C09H29120.2°120.0°
C10C14C16115.3°120.0°
C14C10H30119.2°120.0°
C14C16F19114.0°109.4°
C14C16F20107.6°109.5°
C14C16F21107.1°109.5°
F19C16F20113.3°109.4°
F19C16F21107.7°109.5°
F20C16F21106.8°109.5°
H25C04H26109.5°109.6°
H24C03H23109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C02C01C03C04123.9°119.9°
C02C01C03H22117.2°120.2°
C02C01C04H22119.0°120.3°
C01C02C05C06176.0°179.7°
C02C01C03C07161.1°177.3°
C02C01C04C08166.4°176.5°
C01C02C05C09178.6°180.0°
C01C02C06C10178.2°180.0°
C02C01C04H2545.7°56.6°
C02C01C04H2672.8°63.6°
C01C02C05H271.4°0.1°
C01C02C06H281.8°0.0°
C02C01C03H2477.7°62.7°
C02C01C03H2339.9°57.3°
C03C01C04H22118.9°119.9°
C03C01C02C0565.8°120.0°
C03C01C02C06109.9°60.3°
C01C03C07H24121.2°120.1°
C01C03C07H23121.2°120.0°
C03C01C04C0844.4°56.6°
C01C03C07C1115.8°29.8°
C01C03C07O12166.9°150.3°
C03C01C04H2576.4°63.2°
C03C01C04H26165.1°176.5°
C01C03H24H23116.2°120.0°
C04C01C02C0557.9°120.6°
C04C01C02C06126.4°59.1°
C04C01C03C0737.2°57.4°
C01C04C08H25120.8°119.8°
C01C04C08H26120.8°119.9°
C01C04C08C1131.7°28.7°
C01C04C08O13150.9°151.3°
C01C04H25H26117.6°120.2°
C04C01C03H24158.4°177.4°
C04C01C03H2384.0°62.6°
C02C05C09H27180.0°179.9°
C05C02C06C102.4°0.2°
C02C05C09C142.3°0.0°
C05C02C01H22176.9°0.2°
C05C02C06H28177.6°179.7°
C02C05C09H29177.7°179.9°
C06C02C05C092.6°0.3°
C02C06C10H28180.0°179.9°
C02C06C10C141.9°0.1°
C06C02C01H227.4°179.5°
C06C02C05H27177.4°179.8°
C02C06C10H30178.0°180.0°
C03C07C11O12177.1°179.9°
C03C07C11C080.5°0.3°
C07C03C01H2281.7°62.6°
C03C07C11H31179.5°179.7°
C03C07O12H1180.0°179.9°
C07C03H24H23116.1°120.0°
C04C08C11C078.8°0.2°
C04C08C11O13177.4°180.0°
C08C04C01H2274.6°63.3°
C08C04H25H26117.5°120.3°
C04C08C11H31171.2°179.8°
C05C09C14H29180.0°179.9°
C05C09C14C101.6°0.3°
C05C09C14C16177.3°179.9°
C06C10C14C091.5°0.4°
C06C10C14H30180.0°179.9°
C06C10C14C16177.5°180.0°
C07C11C08H31180.0°179.9°
C07C11C08O13173.8°179.8°
C11C07O12H12.7°0.0°
C11C07C03H24137.0°149.8°
C11C07C03H23105.4°90.2°
C08C11C07O12177.6°179.8°
C11C08C04H2589.0°91.1°
C11C08C04H26152.5°148.6°
O12C07C11H312.4°0.3°
O12C07C03H2445.7°30.3°
O12C07C03H2371.9°89.7°
O13C08C04H2588.3°88.9°
O13C08C04H2630.1°31.3°
O13C08C11H316.2°0.1°
C09C14C10C16179.0°179.6°
C09C14C16F191.4°90.3°
C09C14C16F20125.0°29.6°
C09C14C16F21120.4°149.6°
C14C09C05H27177.7°179.9°
C09C14C10H30178.5°179.7°
C10C14C16F19177.5°90.1°
C10C14C16F2056.1°150.0°
C10C14C16F2158.5°30.0°
C14C10C06H28178.1°180.0°
C10C14C09H29178.4°179.7°
C14C16F19F20123.4°120.0°
C14C16F19F21118.7°120.0°
C14C16F20F21114.7°120.0°
C16C14C10H302.5°0.1°
C16C14C09H292.7°0.1°
F19C16F20F21118.4°120.0°
H22C01C04H25164.7°176.9°
H22C01C04H2646.2°56.7°
H22C01C03H2439.5°57.5°
H22C01C03H23157.1°177.4°
H27C05C09H292.3°0.0°
H28C06C10H301.9°0.0°

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PDB entries from 2024-09-11

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