WC7
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O3' | C3' | sing | 1.43Å | 1.43Å | |
C2' | C3' | sing | 1.54Å | 1.51Å | |
C2' | C1' | sing | 1.55Å | 1.51Å | |
S1 | C5 | doub | 1.71Å | 1.59Å | |
S3 | C8 | sing | 1.76Å | 1.75Å | Aromatic |
S3 | C4 | sing | 1.76Å | 1.67Å | Aromatic |
C3' | C4' | sing | 1.54Å | 1.51Å | |
C8 | C6 | doub | 1.33Å | 1.41Å | Aromatic |
C4 | C5 | sing | 1.41Å | 1.48Å | |
C4 | C3 | doub | 1.39Å | 1.46Å | Aromatic |
C5 | N1 | sing | 1.34Å | 1.42Å | |
C6 | C3 | sing | 1.40Å | 1.45Å | Aromatic |
C3 | C2 | sing | 1.48Å | 1.39Å | |
N1 | C1' | sing | 1.47Å | 1.47Å | |
N1 | C1 | sing | 1.37Å | 1.35Å | |
C1' | O4' | sing | 1.44Å | 1.43Å | |
C1 | C2 | doub | 1.34Å | 1.40Å | |
C4' | C5' | sing | 1.53Å | 1.52Å | |
C4' | O4' | sing | 1.44Å | 1.43Å | |
C5' | O5' | sing | 1.43Å | 1.42Å | |
OP1 | P | doub | 1.48Å | 1.51Å | |
OP2 | P | sing | 1.61Å | 1.51Å | |
P | O5' | sing | 1.61Å | 1.60Å | |
C1 | H1 | sing | 1.08Å | 1.08Å | |
C2 | H2 | sing | 1.08Å | 1.08Å | |
C6 | H3 | sing | 1.08Å | 1.08Å | |
C8 | H4 | sing | 1.08Å | 1.08Å | |
C1' | H5 | sing | 1.09Å | 1.10Å | |
C2' | H6 | sing | 1.09Å | 1.10Å | |
C2' | H7 | sing | 1.09Å | 1.10Å | |
C3' | H8 | sing | 1.09Å | 1.10Å | |
C4' | H9 | sing | 1.09Å | 1.10Å | |
C5' | H10 | sing | 1.09Å | 1.10Å | |
C5' | H11 | sing | 1.09Å | 1.10Å | |
O3' | H12 | sing | 0.97Å | 0.95Å | |
OP2 | H14 | sing | 0.97Å | 0.95Å | |
P | OP3 | sing | 1.61Å | 1.61Å | |
OP3 | H16 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O3' | C3' | C2' | 110.4° | 110.5° |
O3' | C3' | C4' | 111.6° | 110.5° |
O3' | C3' | H8 | 110.7° | 110.6° |
C3' | O3' | H12 | 109.5° | 114.0° |
C3' | C2' | C1' | 107.2° | 104.1° |
C2' | C3' | C4' | 105.0° | 104.1° |
C3' | C2' | H6 | 110.1° | 110.5° |
C3' | C2' | H7 | 110.0° | 110.5° |
C2' | C3' | H8 | 109.5° | 110.5° |
C2' | C1' | N1 | 113.9° | 110.4° |
C2' | C1' | O4' | 106.5° | 104.8° |
C2' | C1' | H5 | 108.2° | 110.4° |
C1' | C2' | H6 | 110.0° | 110.5° |
C1' | C2' | H7 | 110.1° | 110.5° |
S1 | C5 | C4 | 121.1° | 119.7° |
S1 | C5 | N1 | 121.6° | 119.6° |
C8 | S3 | C4 | 95.9° | 91.4° |
S3 | C8 | C6 | 110.3° | 110.6° |
S3 | C8 | H4 | 124.9° | 124.7° |
S3 | C4 | C5 | 130.3° | 131.2° |
S3 | C4 | C3 | 108.9° | 109.4° |
C3' | C4' | C5' | 110.2° | 110.4° |
C3' | C4' | O4' | 108.1° | 104.8° |
C4' | C3' | H8 | 109.5° | 110.5° |
C3' | C4' | H9 | 109.9° | 110.4° |
C8 | C6 | C3 | 111.2° | 115.8° |
C8 | C6 | H3 | 124.4° | 122.2° |
C6 | C8 | H4 | 124.9° | 124.7° |
C5 | C4 | C3 | 120.8° | 119.3° |
C4 | C5 | N1 | 117.2° | 120.7° |
C4 | C3 | C6 | 113.6° | 112.7° |
C4 | C3 | C2 | 116.8° | 117.5° |
C5 | N1 | C1' | 120.2° | 119.2° |
C5 | N1 | C1 | 119.8° | 121.7° |
C6 | C3 | C2 | 129.5° | 129.8° |
C3 | C6 | H3 | 124.4° | 122.1° |
C3 | C2 | C1 | 120.9° | 119.5° |
C3 | C2 | H2 | 119.6° | 120.2° |
C1' | N1 | C1 | 120.0° | 119.1° |
N1 | C1' | O4' | 110.2° | 110.4° |
N1 | C1' | H5 | 108.7° | 110.3° |
N1 | C1 | C2 | 124.5° | 121.3° |
N1 | C1 | H1 | 117.7° | 119.3° |
C1' | O4' | C4' | 111.8° | 105.3° |
O4' | C1' | H5 | 109.2° | 110.3° |
C2 | C1 | H1 | 117.7° | 119.4° |
C1 | C2 | H2 | 119.6° | 120.2° |
C5' | C4' | O4' | 107.8° | 110.4° |
C4' | C5' | O5' | 108.2° | 109.5° |
C5' | C4' | H9 | 109.8° | 110.3° |
C4' | C5' | H10 | 109.8° | 109.5° |
C4' | C5' | H11 | 109.8° | 109.5° |
O4' | C4' | H9 | 111.1° | 110.5° |
C5' | O5' | P | 118.5° | 123.0° |
O5' | C5' | H10 | 109.8° | 109.4° |
O5' | C5' | H11 | 109.8° | 109.4° |
OP1 | P | OP2 | 119.7° | 109.5° |
OP1 | P | O5' | 109.7° | 109.5° |
OP1 | P | OP3 | 107.8° | 109.5° |
OP2 | P | O5' | 107.0° | 109.5° |
P | OP2 | H14 | 109.5° | 114.0° |
OP2 | P | OP3 | 107.7° | 109.5° |
O5' | P | OP3 | 103.8° | 109.5° |
H6 | C2' | H7 | 109.4° | 110.6° |
H10 | C5' | H11 | 109.5° | 109.5° |
P | OP3 | H16 | 109.5° | 114.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O3' | C3' | C2' | C4' | 120.4° | 118.6° |
O3' | C3' | C2' | H8 | 122.1° | 122.7° |
O3' | C3' | C2' | C1' | 132.3° | 118.6° |
O3' | C3' | C4' | H8 | 122.9° | 122.7° |
O3' | C3' | C4' | C5' | 114.1° | 98.5° |
O3' | C3' | C4' | O4' | 128.3° | 142.6° |
O3' | C3' | C2' | H6 | 108.0° | 0.0° |
O3' | C3' | C2' | H7 | 12.7° | 122.7° |
O3' | C3' | C4' | H9 | 7.0° | 23.7° |
C3' | C2' | C1' | H6 | 119.7° | 118.7° |
C3' | C2' | C1' | H7 | 119.7° | 118.6° |
C2' | C3' | C4' | H8 | 117.5° | 118.7° |
C3' | C2' | C1' | N1 | 110.8° | 142.8° |
C3' | C2' | C1' | O4' | 10.9° | 23.9° |
C2' | C3' | C4' | C5' | 126.2° | 142.8° |
C2' | C3' | C4' | O4' | 8.7° | 24.0° |
C3' | C2' | C1' | H5 | 128.2° | 94.9° |
C3' | C2' | H6 | H7 | 121.1° | 122.7° |
C2' | C3' | C4' | H9 | 112.6° | 95.0° |
C2' | C3' | O3' | H12 | 180.0° | 61.4° |
C1' | C2' | C3' | C4' | 11.9° | 0.0° |
C2' | C1' | N1 | C5 | 91.8° | 118.1° |
C2' | C1' | N1 | O4' | 119.6° | 115.4° |
C2' | C1' | N1 | H5 | 120.7° | 122.4° |
C2' | C1' | N1 | C1 | 89.6° | 61.8° |
C2' | C1' | O4' | H5 | 116.6° | 118.9° |
C2' | C1' | O4' | C4' | 5.6° | 40.5° |
C1' | C2' | H6 | H7 | 121.1° | 122.7° |
C1' | C2' | C3' | H8 | 105.6° | 118.6° |
S1 | C5 | C4 | S3 | 0.0° | 0.7° |
S1 | C5 | C4 | N1 | 179.8° | 179.2° |
S1 | C5 | C4 | C3 | 179.9° | 180.0° |
S1 | C5 | N1 | C1' | 1.2° | 0.3° |
S1 | C5 | N1 | C1 | 179.8° | 179.8° |
S3 | C8 | C6 | H4 | 180.0° | 179.9° |
C8 | S3 | C4 | C5 | 180.0° | 179.5° |
C8 | S3 | C4 | C3 | 0.0° | 0.1° |
S3 | C8 | C6 | C3 | 0.0° | 0.1° |
S3 | C8 | C6 | H3 | 180.0° | 179.9° |
C4 | S3 | C8 | C6 | 0.0° | 0.2° |
S3 | C4 | C5 | C3 | 180.0° | 179.3° |
S3 | C4 | C5 | N1 | 179.8° | 180.0° |
S3 | C4 | C3 | C6 | 0.0° | 0.1° |
S3 | C4 | C3 | C2 | 180.0° | 179.9° |
C4 | S3 | C8 | H4 | 180.0° | 180.0° |
C3' | C4' | O4' | C1' | 2.0° | 40.5° |
C3' | C4' | C5' | O4' | 117.7° | 115.4° |
C3' | C4' | C5' | H9 | 121.1° | 122.2° |
C3' | C4' | O4' | H9 | 120.6° | 118.9° |
C3' | C4' | C5' | O5' | 141.3° | 175.0° |
C4' | C3' | C2' | H6 | 131.5° | 118.6° |
C4' | C3' | C2' | H7 | 107.8° | 118.6° |
C3' | C4' | C5' | H10 | 21.4° | 55.0° |
C3' | C4' | C5' | H11 | 98.9° | 65.0° |
C4' | C3' | O3' | H12 | 63.6° | 176.1° |
C8 | C6 | C3 | C4 | 0.0° | 0.0° |
C8 | C6 | C3 | H3 | 180.0° | 180.0° |
C8 | C6 | C3 | C2 | 179.9° | 180.0° |
C5 | C4 | C3 | C6 | 180.0° | 179.5° |
C5 | C4 | C3 | C2 | 0.1° | 0.5° |
C4 | C5 | N1 | C1' | 179.0° | 179.5° |
C4 | C5 | N1 | C1 | 0.4° | 0.6° |
C3 | C4 | C5 | N1 | 0.2° | 0.8° |
C4 | C3 | C6 | C2 | 179.9° | 180.0° |
C4 | C3 | C2 | C1 | 0.1° | 0.0° |
C4 | C3 | C2 | H2 | 179.9° | 180.0° |
C4 | C3 | C6 | H3 | 180.0° | 180.0° |
C5 | N1 | C1' | C1 | 178.6° | 179.9° |
C5 | N1 | C1' | O4' | 148.6° | 126.5° |
C5 | N1 | C1 | C2 | 0.4° | 0.1° |
C5 | N1 | C1 | H1 | 179.6° | 179.7° |
C5 | N1 | C1' | H5 | 28.9° | 4.2° |
C6 | C3 | C2 | C1 | 180.0° | 180.0° |
C6 | C3 | C2 | H2 | 0.0° | 0.0° |
C3 | C6 | C8 | H4 | 180.0° | 180.0° |
C3 | C2 | C1 | N1 | 0.1° | 0.2° |
C3 | C2 | C1 | H2 | 180.0° | 180.0° |
C3 | C2 | C1 | H1 | 179.9° | 180.0° |
C2 | C3 | C6 | H3 | 0.1° | 0.0° |
N1 | C1' | O4' | H5 | 119.4° | 122.2° |
C1' | N1 | C1 | C2 | 179.0° | 180.0° |
N1 | C1' | O4' | C4' | 118.5° | 159.3° |
C1' | N1 | C1 | H1 | 1.0° | 0.2° |
N1 | C1' | C2' | H6 | 8.9° | 98.5° |
N1 | C1' | C2' | H7 | 129.6° | 24.2° |
C1 | N1 | C1' | O4' | 30.0° | 53.6° |
N1 | C1 | C2 | H1 | 180.0° | 179.8° |
N1 | C1 | C2 | H2 | 179.9° | 179.8° |
C1 | N1 | C1' | H5 | 149.7° | 175.8° |
C1' | O4' | C4' | C5' | 121.1° | 159.3° |
O4' | C1' | C2' | H6 | 130.6° | 142.6° |
O4' | C1' | C2' | H7 | 108.7° | 94.7° |
C1' | O4' | C4' | H9 | 118.5° | 78.4° |
C5' | C4' | O4' | H9 | 120.4° | 122.3° |
C4' | C5' | O5' | H10 | 119.8° | 120.0° |
C4' | C5' | O5' | H11 | 119.8° | 120.0° |
C4' | C5' | O5' | P | 93.1° | 180.0° |
C5' | C4' | C3' | H8 | 8.8° | 24.2° |
C4' | C5' | H10 | H11 | 120.5° | 120.0° |
O4' | C4' | C5' | O5' | 101.0° | 69.6° |
C4' | O4' | C1' | H5 | 122.2° | 78.4° |
O4' | C4' | C3' | H8 | 108.8° | 94.7° |
O4' | C4' | C5' | H10 | 139.2° | 170.4° |
O4' | C4' | C5' | H11 | 18.8° | 50.4° |
C5' | O5' | P | OP1 | 68.1° | 55.0° |
C5' | O5' | P | OP2 | 63.2° | 175.0° |
O5' | C5' | C4' | H9 | 20.1° | 52.8° |
O5' | C5' | H10 | H11 | 120.6° | 119.9° |
C5' | O5' | P | OP3 | 176.9° | 65.0° |
OP1 | P | OP2 | O5' | 125.5° | 120.0° |
OP1 | P | OP2 | OP3 | 123.4° | 120.0° |
OP1 | P | O5' | OP3 | 115.0° | 120.0° |
OP1 | P | OP2 | H14 | 0.0° | 60.0° |
OP1 | P | OP3 | H16 | 0.0° | 180.0° |
OP2 | P | O5' | OP3 | 113.7° | 120.0° |
OP2 | P | OP3 | H16 | 130.4° | 60.0° |
P | O5' | C5' | H10 | 26.7° | 60.0° |
P | O5' | C5' | H11 | 147.1° | 60.0° |
O5' | P | OP2 | H14 | 125.5° | 180.0° |
O5' | P | OP3 | H16 | 116.4° | 60.0° |
H1 | C1 | C2 | H2 | 0.1° | 0.0° |
H3 | C6 | C8 | H4 | 0.0° | 0.0° |
H5 | C1' | C2' | H6 | 112.1° | 23.8° |
H5 | C1' | C2' | H7 | 8.6° | 146.5° |
H6 | C2' | C3' | H8 | 14.1° | 122.8° |
H7 | C2' | C3' | H8 | 134.8° | 0.0° |
H8 | C3' | C4' | H9 | 129.9° | 146.4° |
H8 | C3' | O3' | H12 | 58.6° | 61.3° |
H9 | C4' | C5' | H10 | 99.7° | 67.2° |
H9 | C4' | C5' | H11 | 139.9° | 172.7° |
H14 | OP2 | P | OP3 | 123.4° | 60.0° |