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Summary Geometry Related PDB entries

W6L

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C	doub	1.38Å	1.39Å	Aromatic
C1	C2	sing	1.38Å	1.38Å	Aromatic
C	C5	sing	1.38Å	1.35Å	Aromatic
C2	C3	doub	1.38Å	1.38Å	Aromatic
C5	C4	doub	1.38Å	1.38Å	Aromatic
C3	C4	sing	1.38Å	1.39Å	Aromatic
C3	C6	sing	1.51Å	1.52Å
N	C8	trip	1.14Å	1.11Å
C6	C7	sing	1.53Å	1.55Å
C6	N1	sing	1.47Å	1.45Å
C8	C7	sing	1.47Å	1.46Å
N1	H9	sing	1.01Å	1.00Å
N1	H10	sing	1.01Å	1.00Å
C7	H6	sing	1.09Å	1.10Å
C7	H7	sing	1.09Å	1.10Å
C1	H2	sing	1.08Å	1.08Å
C5	H5	sing	1.08Å	1.08Å
C6	H	sing	1.09Å	1.10Å
C4	H4	sing	1.08Å	1.08Å
C2	H3	sing	1.08Å	1.08Å
C	H1	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C	C1	C2	120.3°	120.1°
C1	C	C5	119.4°	120.0°
C	C1	H2	119.9°	120.0°
C1	C	H1	120.3°	120.1°
C1	C2	C3	120.6°	120.0°
C2	C1	H2	119.8°	120.0°
C1	C2	H3	119.7°	120.0°
C	C5	C4	120.7°	120.0°
C	C5	H5	119.7°	120.0°
C5	C	H1	120.3°	120.0°
C2	C3	C4	118.0°	120.1°
C2	C3	C6	122.2°	120.0°
C3	C2	H3	119.7°	120.0°
C5	C4	C3	120.9°	120.0°
C4	C5	H5	119.6°	120.0°
C5	C4	H4	119.5°	120.0°
C4	C3	C6	119.8°	120.0°
C3	C4	H4	119.5°	120.0°
C3	C6	C7	115.1°	109.5°
C3	C6	N1	109.4°	109.4°
C3	C6	H	107.9°	109.5°
N	C8	C7	178.0°	179.9°
C7	C6	N1	107.9°	109.5°
C6	C7	C8	120.8°	109.5°
C6	C7	H6	106.6°	109.5°
C6	C7	H7	106.6°	109.5°
C7	C6	H	107.5°	109.5°
C6	N1	H9	109.5°	111.0°
C6	N1	H10	109.5°	111.0°
N1	C6	H	108.8°	109.5°
C8	C7	H6	106.6°	109.5°
C8	C7	H7	106.6°	109.5°
H9	N1	H10	109.4°	111.1°
H6	C7	H7	109.4°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C	C1	C2	H2	180.0°	179.7°
C1	C	C5	H1	180.0°	180.0°
C	C1	C2	C3	0.4°	0.0°
C1	C	C5	C4	0.5°	0.1°
C1	C	C5	H5	179.5°	179.9°
C	C1	C2	H3	179.6°	180.0°
C2	C1	C	C5	1.0°	0.1°
C1	C2	C3	H3	180.0°	180.0°
C1	C2	C3	C4	1.7°	0.0°
C1	C2	C3	C6	179.8°	180.0°
C2	C1	C	H1	179.0°	180.0°
C	C5	C4	H5	180.0°	180.0°
C	C5	C4	C3	2.7°	0.1°
C5	C	C1	H2	179.0°	179.6°
C	C5	C4	H4	177.3°	180.0°
C2	C3	C4	C5	3.2°	0.0°
C2	C3	C4	C6	178.6°	179.9°
C2	C3	C6	C7	142.9°	79.9°
C2	C3	C6	N1	95.4°	40.0°
C3	C2	C1	H2	179.6°	179.7°
C2	C3	C6	H	22.8°	160.0°
C2	C3	C4	H4	176.8°	179.9°
C5	C4	C3	H4	180.0°	179.9°
C5	C4	C3	C6	178.3°	180.0°
C4	C5	C	H1	179.5°	180.0°
C4	C3	C6	C7	35.6°	100.0°
C4	C3	C6	N1	86.1°	140.0°
C3	C4	C5	H5	177.3°	180.0°
C4	C3	C6	H	155.7°	20.0°
C4	C3	C2	H3	178.4°	180.0°
C3	C6	C7	N1	122.5°	119.9°
C3	C6	C7	H	120.3°	120.0°
C3	C6	N1	H	117.7°	120.0°
C3	C6	C7	C8	34.0°	175.0°
C3	C6	N1	H9	180.0°	60.0°
C3	C6	N1	H10	60.0°	64.0°
C3	C6	C7	H6	87.6°	65.0°
C3	C6	C7	H7	155.6°	55.0°
C6	C3	C4	H4	1.8°	0.1°
C6	C3	C2	H3	0.2°	0.1°
N	C8	C7	C6	160.5°	119.5°
N	C8	C7	H6	38.9°	120.6°
N	C8	C7	H7	77.9°	0.6°
C7	C6	N1	H	116.4°	120.1°
C6	C7	C8	H6	121.6°	120.0°
C6	C7	C8	H7	121.6°	120.0°
C7	C6	N1	H9	54.1°	59.9°
C7	C6	N1	H10	65.9°	176.0°
C6	C7	H6	H7	114.9°	120.0°
N1	C6	C7	C8	156.5°	65.0°
C6	N1	H9	H10	120.0°	124.0°
N1	C6	C7	H6	34.9°	55.0°
N1	C6	C7	H7	81.9°	174.9°
C8	C7	H6	H7	114.9°	120.0°
C8	C7	C6	H	86.3°	55.0°
H9	N1	C6	H	62.3°	180.0°
H10	N1	C6	H	177.7°	55.9°
H6	C7	C6	H	152.1°	175.0°
H7	C7	C6	H	35.3°	65.0°
H2	C1	C2	H3	0.4°	0.3°
H2	C1	C	H1	1.0°	0.3°
H5	C5	C4	H4	2.7°	0.0°
H5	C5	C	H1	0.5°	0.0°

247536

PDB entries from 2026-01-14

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