Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

W5L

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CC1sing1.51Å1.48Å
C2C1doub1.38Å1.45ÅAromatic
C2C3sing1.39Å1.36ÅAromatic
C1C6sing1.38Å1.32ÅAromatic
C3Osing1.36Å1.36Å
C3C4doub1.39Å1.41ÅAromatic
OC7sing1.43Å1.43Å
CLC6sing1.74Å1.59Å
C6C5doub1.38Å1.32ÅAromatic
C4C5sing1.38Å1.36ÅAromatic
C9C8sing1.53Å1.53Å
C9Nsing1.47Å1.51Å
C8C7sing1.53Å1.56Å
C8O1sing1.43Å1.40Å
C7H1sing1.09Å1.10Å
C7H2sing1.09Å1.10Å
C8H3sing1.09Å1.10Å
C9H4sing1.09Å1.10Å
C9H5sing1.09Å1.10Å
O1H6sing0.97Å0.95Å
C5H7sing1.08Å1.08Å
C4H8sing1.08Å1.08Å
C2H9sing1.08Å1.08Å
CH10sing1.09Å1.10Å
CH11sing1.09Å1.10Å
CH12sing1.09Å1.10Å
NH13sing1.01Å1.00Å
NH14sing1.01Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CC1C2119.4°120.0°
CC1C6121.8°120.0°
C1CH10109.5°109.4°
C1CH11109.5°109.5°
C1CH12109.5°109.5°
C1C2C3117.2°119.9°
C2C1C6118.8°120.0°
C1C2H9121.4°120.1°
C2C3O117.7°120.0°
C2C3C4119.5°120.0°
C3C2H9121.4°120.0°
C1C6CL117.5°120.0°
C1C6C5125.3°120.1°
OC3C4122.8°120.0°
C3OC7114.3°117.0°
C3C4C5121.5°119.9°
C3C4H8119.2°120.1°
OC7C8106.4°109.5°
OC7H1110.2°109.5°
OC7H2110.2°109.5°
CLC6C5117.2°120.0°
C6C5C4117.8°120.0°
C6C5H7121.1°120.0°
C4C5H7121.1°120.0°
C5C4H8119.3°120.0°
C8C9N105.8°109.4°
C9C8C7108.4°109.4°
C9C8O1106.3°109.4°
C9C8H3108.2°109.5°
C8C9H4110.4°109.5°
C8C9H5110.4°109.5°
NC9H4110.4°109.4°
NC9H5110.4°109.5°
C9NH13109.5°111.0°
C9NH14109.5°111.0°
C7C8O1115.8°109.5°
C8C7H1110.3°109.4°
C8C7H2110.3°109.5°
C7C8H3107.9°109.5°
O1C8H3110.0°109.5°
C8O1H6109.5°114.0°
H1C7H2109.5°109.4°
H4C9H5109.5°109.5°
H10CH11109.5°109.5°
H10CH12109.5°109.5°
H11CH12109.4°109.5°
H13NH14109.5°110.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CC1C2C6178.4°179.7°
CC1C2C3177.6°179.7°
CC1C6CL4.6°0.3°
CC1C6C5177.9°179.7°
CC1C2H92.4°0.4°
C1CH10H11120.0°120.0°
C1CH10H12120.0°120.0°
C1CH11H12120.0°120.0°
C1C2C3H9180.0°179.9°
C1C2C3O177.6°179.9°
C1C2C3C40.9°0.1°
C2C1C6CL177.1°179.9°
C2C1C6C50.5°0.0°
C2C1CH1089.2°90.3°
C2C1CH11150.8°29.7°
C2C1CH1230.8°149.7°
C3C2C1C60.7°0.1°
C2C3OC4178.4°180.0°
C2C3OC7118.1°180.0°
C2C3C4C50.8°0.0°
C2C3C4H8179.2°180.0°
C1C6CLC5177.8°180.0°
C1C6C5C40.3°0.1°
C1C6C5H7179.7°180.0°
C6C1C2H9179.3°180.0°
C6C1CH1089.1°90.0°
C6C1CH1130.9°150.0°
C6C1CH12150.9°30.0°
OC3C4C5177.6°180.0°
C3OC7C8173.6°180.0°
C3OC7H154.1°60.0°
C3OC7H266.8°60.0°
OC3C4H82.4°0.0°
OC3C2H92.4°0.0°
C4C3OC760.3°0.0°
C3C4C5C60.5°0.1°
C3C4C5H8180.0°179.9°
C3C4C5H7179.5°180.0°
C4C3C2H9179.1°180.0°
OC7C8C971.6°175.0°
OC7C8H1119.5°120.0°
OC7C8H2119.5°120.0°
OC7C8O1169.2°65.0°
OC7H1H2121.4°120.0°
OC7C8H345.4°55.0°
CLC6C5C4177.2°180.0°
CLC6C5H72.7°0.1°
C6C5C4H7180.0°179.9°
C6C5C4H8179.5°180.0°
C8C9NH4119.4°120.0°
C8C9NH5119.4°120.0°
C9C8C7O1119.3°120.0°
C9C8C7H3116.9°120.0°
C9C8O1H3116.9°120.0°
C9C8C7H148.0°64.9°
C9C8C7H2168.9°55.0°
C8C9H4H5121.7°120.1°
C9C8O1H6180.0°60.0°
C8C9NH13180.0°56.1°
C8C9NH1460.0°179.9°
NC9C8C773.2°175.0°
NC9C8O151.9°65.0°
NC9C8H3170.0°55.0°
NC9H4H5121.7°120.0°
C9NH13H14120.0°123.9°
C7C8O1H3122.7°120.1°
C8C7H1H2121.4°120.0°
C7C8C9H4167.3°55.1°
C7C8C9H546.2°65.0°
C7C8O1H659.5°59.9°
O1C8C7H171.3°55.0°
O1C8C7H249.7°175.0°
O1C8C9H467.5°175.1°
O1C8C9H5171.3°55.0°
H1C7C8H3164.9°175.0°
H2C7C8H374.1°65.0°
H3C8C9H450.6°65.0°
H3C8C9H570.6°175.0°
H3C8O1H663.1°180.0°
H4C9NH1360.6°63.9°
H4C9NH14179.4°60.0°
H5C9NH1360.6°176.1°
H5C9NH1459.5°60.1°
H7C5C4H80.5°0.1°
H10CH11H12120.0°120.0°

224931

PDB entries from 2024-09-11

PDB statisticsPDBj update infoContact PDBjnumon