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SummaryGeometryRelated PDB entries

W09

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
FBPCAYsing1.40Å1.38Å
FBNCAYsing1.40Å1.36Å
FBOCAYsing1.40Å1.32Å
CAYCAXsing1.53Å1.56Å
CAXFBLsing1.40Å1.35Å
CAXCAWsing1.53Å1.54Å
CAXFBMsing1.40Å1.38Å
FBJCAWsing1.40Å1.03Å
CAWFBKsing1.40Å1.17Å
CAWCAVsing1.53Å1.57Å
FBHCAVsing1.40Å1.38Å
CAVFBIsing1.40Å1.31Å
CAVCAUsing1.53Å1.57Å
FBGCAUsing1.40Å1.35Å
CAUFBFsing1.40Å1.29Å
CAUCATsing1.53Å1.55Å
FBDCATsing1.40Å1.41Å
CATFBEsing1.40Å1.33Å
CATCASsing1.53Å1.55Å
FBCCASsing1.40Å1.40Å
CASFBBsing1.40Å1.46Å
CASCARsing1.53Å1.55Å
OAQCAPdoub1.21Å1.23Å
CAPCARsing1.51Å1.55Å
CAPNsing1.35Å1.35Å
CARFAZsing1.40Å1.37Å
CARFBAsing1.40Å1.40Å
OXTCdoub1.21Å1.27Å
CACsing1.51Å1.54Å
CANsing1.46Å1.47Å
CACBsing1.53Å1.49Å
COsing1.34Å1.26Å
CBCGsing1.51Å1.54Å
CGCD1doub1.34Å1.33ÅAromatic
CGCD2sing1.46Å1.32ÅAromatic
CD1NE1sing1.37Å1.34ÅAromatic
CE3CD2doub1.40Å1.34ÅAromatic
CE3CZ3sing1.37Å1.39ÅAromatic
CD2CE2sing1.41Å1.34ÅAromatic
NE1CE2sing1.38Å1.35ÅAromatic
CZ3CH2doub1.39Å1.38ÅAromatic
CE2CZ2doub1.39Å1.34ÅAromatic
CH2CZ2sing1.38Å1.40ÅAromatic
NH1sing0.97Å1.00Å
CAH2sing1.09Å1.10Å
OH3sing0.97Å0.95Å
CBH4sing1.09Å1.10Å
CBH5sing1.09Å1.10Å
CE3H6sing1.08Å1.08Å
CZ3H7sing1.08Å1.08Å
CH2H8sing1.08Å1.08Å
CZ2H9sing1.08Å1.08Å
NE1H10sing0.97Å1.00Å
CD1H11sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
FBPCAYFBN108.9°109.5°
FBPCAYFBO109.7°109.5°
FBPCAYCAX109.1°109.4°
FBNCAYFBO108.6°109.5°
FBNCAYCAX111.6°109.5°
FBOCAYCAX108.9°109.5°
CAYCAXFBL110.1°109.4°
CAYCAXCAW108.3°109.5°
CAYCAXFBM109.4°109.5°
FBLCAXCAW110.9°109.5°
FBLCAXFBM108.9°109.5°
CAWCAXFBM109.2°109.5°
CAXCAWFBJ112.7°109.4°
CAXCAWFBK109.3°109.5°
CAXCAWCAV109.2°109.5°
FBJCAWFBK112.3°109.5°
FBJCAWCAV105.7°109.5°
FBKCAWCAV107.3°109.5°
CAWCAVFBH109.0°109.4°
CAWCAVFBI110.5°109.5°
CAWCAVCAU110.2°109.5°
FBHCAVFBI109.0°109.5°
FBHCAVCAU109.6°109.5°
FBICAVCAU108.4°109.5°
CAVCAUFBG110.3°109.5°
CAVCAUFBF109.0°109.5°
CAVCAUCAT109.3°109.5°
FBGCAUFBF108.4°109.5°
FBGCAUCAT109.9°109.5°
FBFCAUCAT109.9°109.4°
CAUCATFBD108.4°109.5°
CAUCATFBE108.9°109.5°
CAUCATCAS111.6°109.5°
FBDCATFBE110.7°109.5°
FBDCATCAS108.3°109.4°
FBECATCAS108.9°109.5°
CATCASFBC108.3°109.5°
CATCASFBB109.9°109.4°
CATCASCAR111.2°109.5°
FBCCASFBB111.8°109.4°
FBCCASCAR107.5°109.5°
FBBCASCAR108.1°109.5°
CASCARCAP109.3°109.5°
CASCARFAZ109.8°109.4°
CASCARFBA108.9°109.5°
OAQCAPCAR120.8°120.0°
OAQCAPN124.9°120.0°
CARCAPN114.3°120.0°
CAPCARFAZ109.0°109.5°
CAPCARFBA110.4°109.5°
CAPNCA122.7°120.0°
CAPNH1118.7°120.0°
FAZCARFBA109.6°109.5°
OXTCCA116.3°120.0°
OXTCO126.5°119.9°
CCAN108.6°109.4°
CCACB112.0°109.5°
CACO116.8°120.1°
CCAH2107.4°109.4°
NCACB112.2°109.5°
CANH1118.6°120.1°
NCAH2108.4°109.5°
CACBCG113.1°109.4°
CBCAH2108.0°109.5°
CACBH4108.5°109.4°
CACBH5108.5°109.4°
COH3109.5°117.1°
CBCGCD1128.9°126.5°
CBCGCD2120.8°126.6°
CGCBH4108.6°109.5°
CGCBH5108.6°109.5°
CD1CGCD2110.3°107.0°
CGCD1NE1106.6°109.9°
CGCD1H11126.6°125.0°
CGCD2CE3130.8°134.0°
CGCD2CE2107.3°106.1°
CD1NE1CE2108.2°109.9°
CD1NE1H10125.9°125.1°
NE1CD1H11126.7°125.1°
CD2CE3CZ3120.8°119.7°
CE3CD2CE2121.9°120.0°
CD2CE3H6119.6°120.2°
CE3CZ3CH2117.6°120.5°
CZ3CE3H6119.6°120.1°
CE3CZ3H7121.2°119.7°
CD2CE2NE1107.6°107.1°
CD2CE2CZ2120.0°119.3°
NE1CE2CZ2132.4°133.6°
CE2NE1H10126.0°125.0°
CZ3CH2CZ2119.5°120.7°
CH2CZ3H7121.2°119.7°
CZ3CH2H8120.2°119.6°
CE2CZ2CH2120.3°119.8°
CE2CZ2H9119.8°120.1°
CZ2CH2H8120.3°119.7°
CH2CZ2H9119.9°120.1°
H4CBH5109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
FBPCAYFBNFBO119.4°120.0°
FBPCAYFBNCAX120.5°120.0°
FBPCAYFBOCAX119.4°120.0°
FBPCAYCAXFBL57.1°180.0°
FBPCAYCAXCAW64.3°60.0°
FBPCAYCAXFBM176.8°60.0°
FBNCAYFBOCAX121.7°120.0°
FBNCAYCAXFBL63.3°60.0°
FBNCAYCAXCAW175.3°60.0°
FBNCAYCAXFBM56.4°180.0°
FBOCAYCAXFBL176.8°60.0°
FBOCAYCAXCAW55.5°180.0°
FBOCAYCAXFBM63.5°60.0°
CAYCAXFBLCAW119.8°120.0°
CAYCAXFBLFBM120.0°120.0°
CAYCAXCAWFBM119.1°120.0°
CAYCAXCAWFBJ52.8°60.0°
CAYCAXCAWFBK72.8°60.0°
CAYCAXCAWCAV170.1°180.0°
FBLCAXCAWFBM120.0°120.0°
FBLCAXCAWFBJ68.1°179.9°
FBLCAXCAWFBK166.3°60.0°
FBLCAXCAWCAV49.2°60.1°
CAXCAWFBJFBK124.0°120.0°
CAXCAWFBJCAV119.3°120.0°
CAXCAWFBKCAV118.4°120.0°
CAXCAWCAVFBH80.0°60.0°
CAXCAWCAVFBI39.7°60.0°
CAXCAWCAVCAU159.6°180.0°
FBMCAXCAWFBJ171.9°60.0°
FBMCAXCAWFBK46.3°180.0°
FBMCAXCAWCAV70.8°60.0°
FBJCAWFBKCAV115.8°120.0°
FBJCAWCAVFBH41.5°180.0°
FBJCAWCAVFBI161.3°60.0°
FBJCAWCAVCAU78.9°60.0°
FBKCAWCAVFBH161.5°60.0°
FBKCAWCAVFBI78.7°NaN°
FBKCAWCAVCAU41.1°60.0°
CAWCAVFBHFBI120.7°120.0°
CAWCAVFBHCAU120.8°120.0°
CAWCAVFBICAU120.9°120.0°
CAWCAVCAUFBG51.7°60.0°
CAWCAVCAUFBF67.3°60.0°
CAWCAVCAUCAT172.6°180.0°
FBHCAVFBICAU119.3°120.0°
FBHCAVCAUFBG68.4°60.0°
FBHCAVCAUFBF172.7°180.0°
FBHCAVCAUCAT52.5°60.0°
FBICAVCAUFBG172.8°180.0°
FBICAVCAUFBF53.8°60.0°
FBICAVCAUCAT66.3°60.0°
CAVCAUFBGFBF119.3°120.0°
CAVCAUFBGCAT120.5°120.0°
CAVCAUFBFCAT119.8°120.0°
CAVCAUCATFBD57.6°60.0°
CAVCAUCATFBE62.9°60.0°
CAVCAUCATCAS176.8°180.0°
FBGCAUFBFCAT120.1°120.0°
FBGCAUCATFBD63.5°60.0°
FBGCAUCATFBE175.9°NaN°
FBGCAUCATCAS55.7°60.0°
FBFCAUCATFBD177.3°180.0°
FBFCAUCATFBE56.7°60.0°
FBFCAUCATCAS63.6°60.0°
CAUCATFBDFBE119.4°120.0°
CAUCATFBDCAS121.2°120.0°
CAUCATFBECAS121.9°120.0°
CAUCATCASFBC74.0°59.9°
CAUCATCASFBB48.4°60.0°
CAUCATCASCAR168.1°180.0°
FBDCATFBECAS119.0°119.9°
FBDCATCASFBC45.3°60.1°
FBDCATCASFBB167.7°180.0°
FBDCATCASCAR72.7°60.0°
FBECATCASFBC165.7°180.0°
FBECATCASFBB71.9°60.0°
FBECATCASCAR47.8°60.0°
CATCASFBCFBB121.2°119.9°
CATCASFBCCAR120.3°120.0°
CATCASFBBCAR121.5°120.0°
CATCASCARCAP54.4°180.0°
CATCASCARFAZ65.0°60.0°
CATCASCARFBA175.0°60.0°
FBCCASFBBCAR118.2°120.1°
FBCCASCARCAP64.1°60.0°
FBCCASCARFAZ176.5°60.0°
FBCCASCARFBA56.6°180.0°
FBBCASCARCAP175.1°60.0°
FBBCASCARFAZ55.6°180.0°
FBBCASCARFBA64.3°60.0°
CASCARCAPOAQ61.2°25.0°
CASCARCAPFAZ119.9°120.0°
CASCARCAPFBA119.7°120.0°
CASCARCAPN117.1°155.0°
CASCARFAZFBA119.5°120.0°
OAQCAPCARN178.3°180.0°
OAQCAPCARFAZ178.9°95.0°
OAQCAPCARFBA58.5°145.0°
OAQCAPNCA7.2°0.0°
OAQCAPNH1172.8°180.0°
CAPCARFAZFBA120.9°120.0°
CARCAPNCA171.0°180.0°
CARCAPNH19.0°0.0°
NCAPCARFAZ2.8°85.0°
NCAPCARFBA123.2°35.0°
CAPNCAC157.3°85.0°
CAPNCAH1180.0°179.9°
CAPNCACB78.3°155.0°
CAPNCAH240.9°34.9°
OXTCCAO173.3°180.0°
OXTCCAN22.5°0.0°
OXTCCACB147.0°120.0°
OXTCCAH294.5°120.0°
OXTCOH30.0°0.1°
CCANCB124.4°120.0°
CCANH2116.4°119.9°
CCACBH2118.1°120.0°
CCACBCG55.7°175.0°
CCANH122.7°95.0°
CACOH3172.5°180.0°
CCACBH464.8°65.0°
CCACBH5176.3°55.0°
NCACBH2119.4°120.1°
NCACO164.2°180.0°
NCACBCG66.7°65.0°
NCACBH4172.7°55.0°
NCACBH553.8°175.0°
CBCACO39.7°60.0°
CACBCGH4120.5°120.0°
CACBCGH5120.5°119.9°
CACBCGCD17.7°95.0°
CACBCGCD2172.9°85.3°
CBCANH1101.8°24.9°
CACBH4H5118.3°119.9°
OCCAH278.8°60.0°
CBCGCD1CD2179.4°179.7°
CBCGCD1NE1179.4°179.9°
CBCGCD2CE30.3°0.1°
CBCGCD2CE2179.9°179.9°
CGCBCAH2173.8°55.0°
CGCBH4H5118.3°120.1°
CBCGCD1H110.6°0.1°
CGCD1NE1H11180.0°179.8°
CD1CGCD2CE3179.8°179.8°
CD1CGCD2CE20.6°0.2°
CGCD1NE1CE21.3°0.4°
CD1CGCBH4128.3°145.0°
CD1CGCBH5112.8°24.9°
CGCD1NE1H10178.7°179.9°
CD2CGCD1NE11.1°0.4°
CGCD2CE3CE2179.6°179.9°
CGCD2CE3CZ3179.4°180.0°
CGCD2CE2NE10.2°0.0°
CGCD2CE2CZ2179.7°180.0°
CD2CGCBH452.4°34.6°
CD2CGCBH566.6°154.7°
CGCD2CE3H60.5°0.0°
CD2CGCD1H11178.8°179.8°
CD1NE1CE2CD20.9°0.3°
CD1NE1CE2H10180.0°179.7°
CD1NE1CE2CZ2178.9°179.8°
CD2CE3CZ3H6180.0°180.0°
CE3CD2CE2NE1179.4°179.9°
CD2CE3CZ3CH20.8°0.0°
CE3CD2CE2CZ20.7°0.0°
CD2CE3CZ3H7179.2°180.0°
CZ3CE3CD2CE20.1°0.0°
CE3CZ3CH2H7180.0°180.0°
CE3CZ3CH2CZ20.7°0.0°
CE3CZ3CH2H8179.3°180.0°
CD2CE2NE1CZ2179.9°179.9°
CD2CE2CZ2CH20.8°0.0°
CE2CD2CE3H6179.9°180.0°
CD2CE2CZ2H9179.2°180.0°
CD2CE2NE1H10179.0°179.9°
NE1CE2CZ2CH2179.3°180.0°
NE1CE2CZ2H90.7°0.0°
CE2NE1CD1H11178.7°179.8°
CZ3CH2CZ2CE20.1°0.0°
CZ3CH2CZ2H8180.0°180.0°
CH2CZ3CE3H6179.2°180.0°
CZ3CH2CZ2H9179.9°180.0°
CE2CZ2CH2H9180.0°180.0°
CE2CZ2CH2H8179.9°180.0°
CZ2CE2NE1H101.1°0.1°
CZ2CH2CZ3H7179.3°179.9°
H1NCAH2139.1°145.0°
H2CACBH453.3°175.0°
H2CACBH565.6°65.0°
H6CE3CZ3H70.8°0.0°
H7CZ3CH2H80.7°0.0°
H8CH2CZ2H90.1°0.0°
H10NE1CD1H111.3°0.1°

222415

PDB entries from 2024-07-10

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