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VYZ

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O2N1doub1.22Å1.20Å
O1N1doub1.22Å1.20Å
N1C5sing1.48Å1.47Å
C5C4doub1.38Å1.38ÅAromatic
C5C6sing1.38Å1.38ÅAromatic
C4C3sing1.38Å1.37ÅAromatic
C6C7doub1.38Å1.39ÅAromatic
C3C2doub1.39Å1.40ÅAromatic
C7C2sing1.39Å1.39ÅAromatic
C2Nsing1.40Å1.40Å
NC1sing1.35Å1.39Å
OC1doub1.21Å1.21Å
C1Csing1.51Å1.51Å
C7H1sing1.08Å1.08Å
C6H2sing1.08Å1.08Å
C4H3sing1.08Å1.08Å
C3H4sing1.08Å1.08Å
NH5sing0.97Å1.00Å
CH6sing1.09Å1.10Å
CH7sing1.09Å1.10Å
CH8sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O2N1O1122.7°120.0°
O2N1C5118.4°120.0°
O1N1C5118.9°120.0°
N1C5C4118.4°119.9°
N1C5C6120.0°119.9°
C4C5C6121.7°120.2°
C5C4C3119.1°120.1°
C5C4H3120.4°120.0°
C5C6C7119.4°120.1°
C5C6H2120.3°120.0°
C4C3C2120.4°119.9°
C3C4H3120.4°119.9°
C4C3H4119.8°120.0°
C6C7C2119.4°119.9°
C6C7H1120.3°120.0°
C7C6H2120.3°120.0°
C3C2C7120.0°119.8°
C3C2N117.4°120.1°
C2C3H4119.8°120.0°
C7C2N122.6°120.1°
C2C7H1120.3°120.0°
C2NC1125.0°120.0°
C2NH5117.5°120.0°
NC1O121.8°120.0°
NC1C114.6°120.0°
C1NH5117.5°120.0°
OC1C123.5°120.0°
C1CH6109.5°109.4°
C1CH7109.5°109.5°
C1CH8109.5°109.5°
H6CH7109.5°109.4°
H6CH8109.5°109.5°
H7CH8109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O2N1O1C5179.9°179.7°
O2N1C5C40.0°179.7°
O2N1C5C6179.6°0.3°
O1N1C5C4179.9°0.0°
O1N1C5C60.4°180.0°
N1C5C4C6179.6°180.0°
N1C5C4C3179.1°179.7°
N1C5C6C7179.2°180.0°
N1C5C6H20.8°0.0°
N1C5C4H30.9°0.1°
C5C4C3H3180.0°179.7°
C4C5C6C70.4°0.0°
C5C4C3C20.1°0.6°
C4C5C6H2179.6°180.0°
C5C4C3H4179.9°180.0°
C6C5C4C30.5°0.3°
C5C6C7H2180.0°180.0°
C5C6C7C20.0°0.0°
C5C6C7H1180.0°179.7°
C6C5C4H3179.5°180.0°
C4C3C2H4180.0°179.5°
C4C3C2C70.3°0.6°
C4C3C2N179.3°179.5°
C6C7C2C30.4°0.3°
C6C7C2H1180.0°179.7°
C6C7C2N179.2°179.8°
C3C2C7N179.6°179.9°
C3C2NC1171.5°144.9°
C3C2C7H1179.6°180.0°
C2C3C4H3179.9°179.8°
C3C2NH58.6°35.2°
C7C2NC18.9°35.0°
C2C7C6H2180.0°180.0°
C7C2C3H4179.7°180.0°
C7C2NH5171.0°144.9°
C2NC1H5180.0°179.9°
C2NC1O0.0°4.6°
C2NC1C180.0°175.4°
NC2C7H10.8°0.1°
NC2C3H40.7°0.0°
NC1OC179.9°179.9°
NC1CH6179.9°0.1°
NC1CH759.9°120.0°
NC1CH860.0°119.9°
OC1NH5179.9°175.4°
OC1CH60.0°180.0°
OC1CH7120.0°60.0°
OC1CH8120.0°60.0°
CC1NH50.0°4.7°
C1CH6H7120.0°119.9°
C1CH6H8120.0°120.0°
C1CH7H8120.0°120.0°
H1C7C6H20.0°0.3°
H3C4C3H40.1°0.3°
H6CH7H8120.0°120.0°

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PDB entries from 2024-07-10

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