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SummaryGeometryRelated PDB entries

VYV

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
O22S20doub1.42Å1.47Å
N23S20sing1.66Å1.68Å
S20C01sing1.76Å1.78Å
S20O21doub1.42Å1.48Å
C02C01doub1.38Å1.38ÅAromatic
C02C03sing1.38Å1.38ÅAromatic
C01C06sing1.38Å1.38ÅAromatic
C03C04doub1.39Å1.38ÅAromatic
C06C05doub1.38Å1.37ÅAromatic
C04C05sing1.39Å1.38ÅAromatic
C04N07sing1.40Å1.44Å
N07S24sing1.66Å1.69Å
O26S24doub1.42Å1.47Å
S24O25doub1.42Å1.47Å
S24C08sing1.81Å1.80Å
C09C08sing1.53Å1.52Å
C09N10sing1.46Å1.44Å
O12C11doub1.22Å1.18Å
C11N10sing1.35Å1.43Å
C11N13sing1.35Å1.45Å
C15C16doub1.38Å1.38ÅAromatic
C15C14sing1.39Å1.39ÅAromatic
N13C14sing1.40Å1.44Å
C16C17sing1.38Å1.39ÅAromatic
C14C19doub1.39Å1.38ÅAromatic
C17C18doub1.38Å1.39ÅAromatic
C19C18sing1.38Å1.38ÅAromatic
C15H1sing1.08Å1.08Å
C17H2sing1.08Å1.08Å
C02H3sing1.08Å1.08Å
C03H4sing1.08Å1.08Å
C05H5sing1.08Å1.08Å
C06H6sing1.08Å1.08Å
N07H7sing0.97Å1.00Å
C08H8sing1.09Å1.10Å
C08H9sing1.09Å1.10Å
C09H10sing1.09Å1.10Å
C09H11sing1.09Å1.10Å
N10H12sing0.97Å1.00Å
N13H13sing0.97Å1.00Å
C16H14sing1.08Å1.08Å
C18H15sing1.08Å1.08Å
C19H16sing1.08Å1.08Å
N23H17sing0.97Å1.00Å
N23H18sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O22S20N23113.2°106.4°
O22S20C01105.6°106.4°
O22S20O21102.9°123.2°
N23S20C01110.2°107.2°
N23S20O21111.2°106.4°
S20N23H17109.5°119.9°
S20N23H18109.5°120.0°
C01S20O21113.5°106.4°
S20C01C02119.0°119.9°
S20C01C06118.2°120.0°
C01C02C03118.3°120.1°
C02C01C06122.8°120.1°
C01C02H3120.8°119.9°
C02C03C04119.3°119.9°
C03C02H3120.8°120.0°
C02C03H4120.3°120.0°
C01C06C05118.7°120.1°
C01C06H6120.6°120.0°
C03C04C05121.7°119.9°
C03C04N07118.8°120.1°
C04C03H4120.3°120.0°
C06C05C04119.1°119.9°
C06C05H5120.4°120.0°
C05C06H6120.7°119.9°
C05C04N07119.5°120.0°
C04C05H5120.4°120.1°
C04N07S24121.6°120.0°
C04N07H7106.4°120.0°
N07S24O26112.0°104.3°
N07S24O25110.6°104.3°
N07S24C08108.4°104.4°
S24N07H7106.4°120.0°
O26S24O25105.9°121.1°
O26S24C08110.5°110.5°
O25S24C08109.5°110.5°
S24C08C09106.3°109.5°
S24C08H8110.3°109.5°
S24C08H9110.3°109.5°
C08C09N10107.8°109.5°
C09C08H8110.2°109.5°
C09C08H9110.2°109.5°
C08C09H10109.9°109.5°
C08C09H11109.9°109.4°
C09N10C11116.9°120.0°
N10C09H10109.9°109.5°
N10C09H11109.9°109.4°
C09N10H12121.5°120.0°
O12C11N10119.4°120.0°
O12C11N13124.7°120.0°
N10C11N13115.9°120.0°
C11N10H12121.5°120.0°
C11N13C14124.4°120.0°
C11N13H13117.8°120.0°
C16C15C14118.8°119.9°
C15C16C17120.6°120.1°
C16C15H1120.6°120.1°
C15C16H14119.7°120.0°
C15C14N13122.3°120.1°
C15C14C19120.9°119.8°
C14C15H1120.6°120.0°
N13C14C19116.8°120.1°
C14N13H13117.8°120.0°
C16C17C18120.2°120.1°
C16C17H2119.9°119.9°
C17C16H14119.7°119.9°
C14C19C18120.0°120.0°
C14C19H16120.0°120.0°
C17C18C19119.4°120.1°
C18C17H2119.9°120.0°
C17C18H15120.3°120.0°
C19C18H15120.3°119.9°
C18C19H16120.0°120.0°
H8C08H9109.5°109.4°
H10C09H11109.5°109.5°
H17N23H18109.5°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O22S20N23C01118.0°113.5°
O22S20N23O21115.3°132.9°
O22S20C01O21112.0°132.9°
O22S20C01C02113.5°156.7°
O22S20C01C0664.0°23.6°
O22S20N23H17180.0°96.4°
O22S20N23H1860.0°83.5°
N23S20C01O21125.4°113.5°
N23S20C01C029.2°89.7°
N23S20C01C06173.4°90.0°
S20N23H17H18120.0°179.9°
S20C01C02C06177.3°179.7°
S20C01C02C03178.7°179.7°
S20C01C06C05178.5°179.7°
S20C01C02H31.3°0.3°
S20C01C06H61.5°0.3°
C01S20N23H1762.0°150.1°
C01S20N23H1858.0°30.0°
O21S20C01C02134.6°23.8°
O21S20C01C0648.0°156.5°
O21S20N23H1764.7°36.5°
O21S20N23H18175.3°143.6°
C01C02C03H3180.0°180.0°
C01C02C03C040.9°0.0°
C02C01C06C051.2°0.0°
C01C02C03H4179.1°179.9°
C02C01C06H6178.8°180.0°
C03C02C01C061.4°0.0°
C02C03C04H4180.0°180.0°
C02C03C04C050.3°0.0°
C02C03C04N07178.4°180.0°
C01C06C05H6180.0°180.0°
C01C06C05C040.6°0.1°
C06C01C02H3178.6°180.0°
C01C06C05H5179.5°180.0°
C03C04C05C060.1°0.0°
C03C04C05N07178.7°180.0°
C03C04N07S24115.7°75.2°
C04C03C02H3179.1°180.0°
C03C04C05H5179.9°180.0°
C03C04N07H7122.6°104.7°
C06C05C04H5180.0°180.0°
C06C05C04N07178.6°180.0°
C05C04N07S2465.6°104.9°
C05C04C03H4179.7°179.9°
C04C05C06H6179.5°180.0°
C05C04N07H756.1°75.3°
C04N07S24H7121.7°179.9°
C04N07S24O26160.8°51.6°
C04N07S24O2543.0°179.5°
C04N07S24C0877.1°64.5°
N07C04C03H41.6°0.0°
N07C04C05H51.4°0.0°
N07S24O26O25120.6°116.8°
N07S24O26C08121.0°111.7°
N07S24O25C08119.4°111.7°
N07S24C08C0958.9°175.1°
N07S24C08H860.6°64.9°
N07S24C08H9178.4°55.0°
O26S24O25C08119.1°131.5°
O26S24C08C0964.2°63.5°
O26S24N07H739.1°128.3°
O26S24C08H8176.3°176.5°
O26S24C08H955.4°56.6°
O25S24C08C09179.6°73.3°
O25S24N07H778.7°0.4°
O25S24C08H860.1°46.7°
O25S24C08H960.9°166.7°
S24C08C09H8119.5°120.0°
S24C08C09H9119.5°120.0°
S24C08C09N10164.8°180.0°
C08S24N07H7161.2°115.6°
S24C08H8H9121.5°120.0°
S24C08C09H1045.1°60.0°
S24C08C09H1175.4°60.0°
C08C09N10H10119.8°120.0°
C08C09N10H11119.7°120.0°
C08C09N10C1191.7°180.0°
C09C08H8H9121.4°120.0°
C08C09H10H11120.8°120.0°
C08C09N10H1288.3°0.0°
C09N10C11O120.3°0.0°
C09N10C11H12180.0°179.9°
C09N10C11N13179.9°180.0°
N10C09C08H875.7°60.0°
N10C09C08H945.3°59.9°
N10C09H10H11120.8°120.0°
O12C11N10N13179.8°180.0°
O12C11N13C141.2°4.6°
O12C11N10H12179.7°180.0°
O12C11N13H13178.8°175.4°
N10C11N13C14178.6°175.3°
C11N10C09H10148.5°60.0°
C11N10C09H1128.0°60.0°
N10C11N13H131.4°4.7°
C11N13C14C1536.4°35.2°
C11N13C14H13180.0°180.0°
C11N13C14C19143.6°144.7°
N13C11N10H120.1°0.1°
C16C15C14H1180.0°179.8°
C16C15C14N13179.6°180.0°
C15C16C17H14180.0°179.9°
C16C15C14C190.4°0.1°
C15C16C17C180.3°0.1°
C15C16C17H2179.7°179.9°
C15C14N13C19180.0°179.9°
C14C15C16C170.4°0.1°
C15C14C19C180.2°0.1°
C15C14N13H13143.6°144.7°
C14C15C16H14179.6°180.0°
C15C14C19H16179.8°180.0°
N13C14C19C18179.8°180.0°
N13C14C15H10.4°0.2°
N13C14C19H160.3°0.1°
C16C17C18H2180.0°180.0°
C16C17C18C190.1°0.1°
C17C16C15H1179.6°179.7°
C16C17C18H15179.9°180.0°
C14C19C18C170.1°0.1°
C14C19C18H16180.0°179.9°
C19C14C15H1179.7°179.7°
C19C14N13H1336.4°35.3°
C14C19C18H15179.9°180.0°
C17C18C19H15180.0°179.9°
C18C17C16H14179.7°180.0°
C17C18C19H16179.9°180.0°
C19C18C17H2179.9°179.9°
H1C15C16H140.4°0.2°
H2C17C16H140.3°0.0°
H2C17C18H150.1°0.0°
H3C02C03H40.9°0.0°
H5C05C06H60.5°0.0°
H8C08C09H10164.6°60.1°
H8C08C09H1144.1°180.0°
H9C08C09H1074.5°180.0°
H9C08C09H11165.0°60.0°
H10C09N10H1231.5°120.1°
H11C09N10H12152.0°119.9°
H15C18C19H160.1°0.1°

222415

PDB entries from 2024-07-10

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