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VYM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C13C12doub1.38Å1.41ÅAromatic
C13C08sing1.39Å1.42ÅAromatic
C12C11sing1.39Å1.40ÅAromatic
C07C08sing1.51Å1.49Å
C07C06sing1.53Å1.55Å
C08C09doub1.39Å1.42ÅAromatic
C11N02sing1.40Å1.35Å
C11C10doub1.39Å1.40ÅAromatic
C06C05sing1.53Å1.55Å
C09C10sing1.39Å1.43ÅAromatic
C09N01sing1.40Å1.41Å
C05N01sing1.47Å1.45Å
N01C01sing1.35Å1.38Å
C01C02sing1.51Å1.47Å
C01O01doub1.21Å1.25Å
C02C03sing1.53Å1.54Å
C02C04sing1.53Å1.53Å
C03C04sing1.53Å1.53Å
C02H1sing1.09Å1.10Å
C03H2sing1.09Å1.10Å
C03H3sing1.09Å1.10Å
C04H4sing1.09Å1.10Å
C04H5sing1.09Å1.10Å
C05H6sing1.09Å1.10Å
C05H7sing1.09Å1.10Å
C06H8sing1.09Å1.10Å
C06H9sing1.09Å1.10Å
C07H10sing1.09Å1.10Å
C07H11sing1.09Å1.10Å
C13H12sing1.08Å1.08Å
C10H13sing1.08Å1.08Å
C12H14sing1.08Å1.08Å
N02H15sing0.97Å1.00Å
N02H16sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C12C13C08121.4°120.4°
C13C12C11119.9°120.1°
C12C13H12119.3°119.8°
C13C12H14120.0°120.0°
C13C08C07119.0°118.9°
C13C08C09119.9°119.6°
C08C13H12119.3°119.8°
C12C11N02122.0°120.1°
C12C11C10118.4°119.7°
C11C12H14120.1°119.9°
C08C07C06115.8°110.5°
C07C08C09121.1°121.5°
C08C07H10107.9°109.3°
C08C07H11107.9°109.3°
C07C06C05112.3°108.8°
C07C06H8108.8°109.6°
C07C06H9108.8°109.7°
C06C07H10107.8°109.2°
C06C07H11107.9°109.3°
C08C09C10116.6°120.1°
C08C09N01117.8°120.8°
N02C11C10119.7°120.1°
C11N02H15109.5°120.0°
C11N02H16109.5°120.0°
C11C10C09123.9°120.0°
C11C10H13118.1°120.0°
C06C05N01107.8°107.8°
C06C05H6109.9°109.9°
C06C05H7109.9°109.9°
C05C06H8108.8°109.6°
C05C06H9108.8°109.6°
C10C09N01125.6°119.1°
C09C10H13118.0°120.1°
C09N01C05116.0°118.9°
C09N01C01126.4°120.5°
C05N01C01117.6°120.6°
N01C05H6109.9°109.8°
N01C05H7109.9°109.8°
N01C01C02122.8°120.0°
N01C01O01121.9°120.1°
C02C01O01115.2°119.9°
C01C02C03119.2°117.5°
C01C02C04116.4°117.6°
C01C02H1117.1°115.6°
C03C02C0459.9°60.0°
C02C03C0459.7°60.0°
C03C02H1115.8°117.4°
C02C03H2120.1°117.5°
C02C03H3120.1°117.5°
C02C04C0360.5°60.0°
C04C02H1116.0°117.5°
C02C04H4119.9°117.4°
C02C04H5119.9°117.5°
C04C03H2120.0°117.5°
C04C03H3120.1°117.5°
C03C04H4119.9°117.5°
C03C04H5119.9°117.5°
H2C03H3109.5°115.6°
H4C04H5109.5°115.6°
H6C05H7109.5°109.7°
H8C06H9109.5°109.6°
H10C07H11109.5°109.2°
H15N02H16109.4°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C12C13C08H12180.0°179.9°
C13C12C11H14180.0°179.9°
C12C13C08C07179.9°179.9°
C12C13C08C090.5°0.1°
C13C12C11N02179.6°179.9°
C13C12C11C100.3°0.2°
C08C13C12C110.3°0.1°
C13C08C07C09179.4°180.0°
C13C08C07C06172.1°159.3°
C13C08C09C101.8°0.2°
C13C08C09N01179.3°179.5°
C13C08C07H1051.2°39.1°
C13C08C07H1167.0°80.4°
C08C13C12H14179.8°180.0°
C12C11N02C10179.3°180.0°
C12C11C10C091.8°0.1°
C11C12C13H12179.8°180.0°
C12C11C10H13178.2°180.0°
C12C11N02H15180.0°180.0°
C12C11N02H1660.0°0.0°
C08C07C06H10120.9°120.3°
C08C07C06H11120.9°120.3°
C08C07C06C0518.6°51.4°
C07C08C09C10178.8°179.8°
C07C08C09N011.3°0.5°
C08C07C06H8139.0°68.4°
C08C07C06H9101.8°171.2°
C08C07H10H11117.1°119.6°
C07C08C13H120.1°0.2°
C06C07C08C098.5°20.7°
C07C06C05H8120.4°119.8°
C07C06C05H9120.4°119.9°
C07C06C05N0151.5°63.3°
C07C06C05H668.3°56.3°
C07C06C05H7171.2°177.1°
C07C06H8H9118.7°120.4°
C06C07H10H11117.1°119.4°
C08C09C10C112.5°0.1°
C08C09C10N01177.3°179.7°
C08C09N01C0536.3°13.5°
C08C09N01C01141.0°166.5°
C09C08C07H10129.5°140.9°
C09C08C07H11112.4°99.6°
C09C08C13H12179.4°179.8°
C08C09C10H13177.5°179.8°
N02C11C10C09178.9°179.9°
N02C11C10H131.1°0.1°
N02C11C12H140.4°0.1°
C11N02H15H16120.0°180.0°
C11C10C09H13180.0°179.9°
C11C10C09N01179.8°179.6°
C10C11C12H14179.7°179.9°
C10C11N02H150.7°0.0°
C10C11N02H16120.7°180.0°
C06C05N01C0962.5°44.7°
C06C05N01H6119.8°119.6°
C06C05N01H7119.7°119.7°
C06C05N01C01115.1°135.3°
C06C05H6H7120.8°120.9°
C05C06H8H9118.7°120.3°
C05C06C07H10102.3°171.7°
C05C06C07H11139.5°68.9°
C10C09N01C05140.9°166.7°
C10C09N01C0141.7°13.2°
C09N01C05C01177.6°179.9°
C09N01C01C020.4°176.6°
C09N01C01O01179.6°3.7°
C09N01C05H657.3°74.9°
C09N01C05H7177.7°164.4°
N01C09C10H130.2°0.5°
C05N01C01C02177.7°3.5°
C05N01C01O013.1°176.3°
N01C05H6H7120.7°120.8°
N01C05C06H8171.9°56.5°
N01C05C06H969.0°176.8°
N01C01C02O01179.3°179.7°
N01C01C02C03105.7°175.3°
N01C01C02C04174.4°116.0°
N01C01C02H142.1°29.7°
C01N01C05H6125.1°105.0°
C01N01C05H74.7°15.7°
C01C02C03C04105.3°107.5°
C01C02C03H1148.3°145.0°
C01C02C04H1143.9°145.1°
C01C02C03H2145.4°145.0°
C01C02C03H34.1°0.0°
C01C02C04H40.4°0.0°
C01C02C04H5140.4°145.0°
O01C01C02C0373.6°5.0°
O01C01C02C044.9°63.7°
O01C01C02H1138.6°150.6°
C03C02C04H1106.1°107.4°
C02C03C04H2109.4°107.6°
C02C03C04H3109.4°107.4°
C02C03H2H3145.0°145.7°
C03C02C04H4109.6°107.5°
C03C02C04H5109.6°107.5°
C02C04H4H5144.5°145.7°
C04C03H2H3144.9°145.7°
C03C04H4H5144.5°145.7°
H1C02C03H22.9°0.1°
H1C02C03H3144.2°145.0°
H1C02C04H4144.3°145.1°
H1C02C04H53.5°0.1°
H2C03C04H4141.0°145.0°
H2C03C04H50.2°0.0°
H3C03C04H40.2°0.0°
H3C03C04H5141.0°145.0°
H6C05C06H852.1°176.1°
H6C05C06H9171.3°63.6°
H7C05C06H868.4°63.1°
H7C05C06H950.8°57.2°
H8C06C07H1018.1°51.9°
H8C06C07H11100.1°171.3°
H9C06C07H10137.2°68.5°
H9C06C07H1119.1°50.9°
H12C13C12H140.2°0.1°

222415

PDB entries from 2024-07-10

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