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VYB

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
OC8sing1.43Å1.39Å
C8C7sing1.53Å1.56Å
BRC4sing1.89Å1.89Å
C7Nsing1.47Å1.52Å
C4C5doub1.38Å1.37ÅAromatic
C4C3sing1.38Å1.37ÅAromatic
C5Csing1.38Å1.38ÅAromatic
C3C2doub1.38Å1.38ÅAromatic
CC1doub1.38Å1.38ÅAromatic
NC6sing1.47Å1.53Å
C2C1sing1.38Å1.38ÅAromatic
C2C6sing1.51Å1.48Å
C7H1sing1.09Å1.10Å
C7H2sing1.09Å1.10Å
C8H3sing1.09Å1.10Å
C8H4sing1.09Å1.10Å
C1H5sing1.08Å1.08Å
C5H6sing1.08Å1.08Å
C6H7sing1.09Å1.10Å
C6H8sing1.09Å1.10Å
C3H9sing1.08Å1.08Å
CH10sing1.08Å1.08Å
NH11sing1.01Å1.00Å
OH13sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
OC8C7102.6°109.5°
OC8H3111.2°109.5°
OC8H4111.1°109.5°
C8OH13109.5°114.0°
C8C7N109.1°109.5°
C8C7H1109.5°109.5°
C8C7H2109.5°109.5°
C7C8H3111.2°109.5°
C7C8H4111.2°109.5°
BRC4C5119.4°120.0°
BRC4C3118.0°120.0°
C7NC6111.5°111.0°
NC7H1109.6°109.5°
NC7H2109.6°109.5°
C7NH11109.0°111.0°
C5C4C3122.6°120.0°
C4C5C118.4°120.0°
C4C5H6120.8°120.0°
C4C3C2118.3°120.0°
C4C3H9120.9°120.0°
C5CC1120.4°120.0°
CC5H6120.8°120.0°
C5CH10119.8°120.0°
C3C2C1120.8°120.0°
C3C2C6119.1°120.0°
C2C3H9120.9°120.0°
CC1C2119.5°120.1°
CC1H5120.2°120.0°
C1CH10119.8°120.0°
NC6C2106.2°109.4°
NC6H7110.3°109.5°
NC6H8110.3°109.4°
C6NH11109.0°111.0°
C1C2C6120.0°120.0°
C2C1H5120.2°120.0°
C2C6H7110.3°109.5°
C2C6H8110.3°109.5°
H1C7H2109.5°109.4°
H3C8H4109.5°109.5°
H7C6H8109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OC8C7H3118.9°120.0°
OC8C7H4118.9°120.0°
OC8C7N169.4°65.0°
OC8C7H170.6°175.0°
OC8C7H249.5°55.0°
OC8H3H4123.2°120.0°
C8C7NH1119.9°120.0°
C8C7NH2119.9°120.0°
C8C7NC6155.4°180.0°
C8C7H1H2120.2°120.0°
C7C8H3H4123.2°120.0°
C8C7NH1184.3°56.1°
C7C8OH13180.0°180.0°
BRC4C5C3179.0°179.7°
BRC4C5C178.8°180.0°
BRC4C3C2178.3°180.0°
BRC4C5H61.2°0.0°
BRC4C3H91.7°0.4°
C7NC6H11120.3°123.9°
C7NC6C288.0°180.0°
NC7H1H2120.2°120.0°
NC7C8H350.5°175.0°
NC7C8H471.7°55.0°
C7NC6H731.5°60.0°
C7NC6H8152.5°60.1°
C4C5CH6180.0°180.0°
C5C4C3C20.8°0.4°
C4C5CC10.1°0.0°
C5C4C3H9179.2°180.0°
C4C5CH10179.9°180.0°
C3C4C5C0.2°0.3°
C4C3C2H9180.0°179.6°
C4C3C2C11.1°0.1°
C4C3C2C6176.5°180.0°
C3C4C5H6179.8°179.7°
C5CC1H10180.0°180.0°
C5CC1C20.2°0.3°
C5CC1H5179.8°179.9°
C3C2C1C0.8°0.2°
C3C2C6N119.1°90.0°
C3C2C1C6177.5°179.9°
C3C2C1H5179.2°179.9°
C3C2C6H70.4°150.0°
C3C2C6H8121.4°29.9°
CC1C2H5180.0°179.7°
CC1C2C6176.7°179.7°
C1CC5H6179.9°180.0°
NC6C2C163.4°90.0°
NC6C2H7119.5°120.0°
NC6C2H8119.5°119.9°
C6NC7H135.5°60.0°
C6NC7H284.6°59.9°
NC6H7H8121.5°120.0°
C1C2C6H7177.1°29.9°
C1C2C6H856.1°150.0°
C1C2C3H9178.9°179.7°
C2C1CH10179.8°179.7°
C6C2C1H53.3°0.0°
C2C6H7H8121.5°120.0°
C6C2C3H93.5°0.4°
C2C6NH11151.7°56.1°
H1C7C8H3170.5°55.0°
H1C7C8H448.3°65.1°
H1C7NH11155.8°176.1°
H2C7C8H369.4°65.0°
H2C7C8H4168.4°175.0°
H2C7NH1135.7°64.0°
H3C8OH1361.1°59.9°
H4C8OH1361.1°60.0°
H5C1CH100.2°0.1°
H6C5CH100.0°0.1°
H7C6NH1188.8°63.9°
H8C6NH1132.2°176.0°

222926

PDB entries from 2024-07-24

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