Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

VY7

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N29C28sing1.39Å1.36Å
N30C28doub1.33Å1.34ÅAromatic
N30C02sing1.32Å1.34ÅAromatic
C28C05sing1.40Å1.39ÅAromatic
N01C02sing1.38Å1.35Å
C02N03doub1.32Å1.33ÅAromatic
C05C06sing1.51Å1.50Å
C05C04doub1.38Å1.36ÅAromatic
N03C04sing1.33Å1.31ÅAromatic
O26C25doub1.21Å1.25Å
C06N07sing1.47Å1.48Å
C04C08sing1.51Å1.50Å
O27C25sing1.34Å1.25Å
C25C22sing1.51Å1.58Å
N07C08sing1.47Å1.46Å
N07C09sing1.35Å1.34Å
C23C22sing1.53Å1.53Å
C23C24sing1.53Å1.54Å
C22C21sing1.53Å1.53Å
O10C09doub1.21Å1.22Å
C09C11sing1.51Å1.51Å
C24N19sing1.47Å1.48Å
C21C20sing1.53Å1.53Å
C11O12sing1.43Å1.41Å
O12C13sing1.36Å1.40Å
N19C20sing1.47Å1.49Å
N19C18sing1.40Å1.40Å
C13C18doub1.39Å1.39ÅAromatic
C13C14sing1.39Å1.37ÅAromatic
C18C17sing1.39Å1.39ÅAromatic
C14C15doub1.38Å1.38ÅAromatic
C17C16doub1.38Å1.38ÅAromatic
C15C16sing1.38Å1.38ÅAromatic
C11H1sing1.09Å1.10Å
C11H2sing1.09Å1.10Å
C14H3sing1.08Å1.08Å
C15H4sing1.08Å1.08Å
C16H5sing1.08Å1.08Å
C17H6sing1.08Å1.08Å
C06H7sing1.09Å1.10Å
C06H8sing1.09Å1.10Å
C08H9sing1.09Å1.10Å
C08H10sing1.09Å1.10Å
C20H11sing1.09Å1.10Å
C20H12sing1.09Å1.10Å
C21H13sing1.09Å1.10Å
C21H14sing1.09Å1.10Å
C22H15sing1.09Å1.10Å
C23H16sing1.09Å1.10Å
C23H17sing1.09Å1.10Å
C24H18sing1.09Å1.10Å
C24H19sing1.09Å1.10Å
N01H20sing0.97Å1.00Å
N01H21sing0.97Å1.00Å
N29H22sing0.97Å1.00Å
N29H23sing0.97Å1.00Å
O27H24sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N29C28N30118.3°120.6°
N29C28C05121.9°120.5°
C28N29H22109.5°120.1°
C28N29H23109.4°120.0°
C28N30C02118.4°120.6°
N30C28C05119.8°118.9°
N30C02N01119.7°119.2°
N30C02N03124.7°121.7°
C28C05C06132.1°132.2°
C28C05C04116.4°118.8°
N01C02N03115.6°119.1°
C02N01H20109.5°120.0°
C02N01H21109.5°120.0°
C02N03C04115.9°120.8°
C06C05C04111.5°109.1°
C05C06N07100.6°107.6°
C05C06H7111.6°109.8°
C05C06H8111.6°109.9°
C05C04N03124.8°119.2°
C05C04C08111.5°108.8°
N03C04C08123.7°131.9°
O26C25O27129.2°120.1°
O26C25C22116.7°119.9°
C06N07C08113.7°106.8°
C06N07C09121.1°126.6°
N07C06H7111.6°109.8°
N07C06H8111.7°109.8°
C04C08N07101.1°107.7°
C04C08H9111.5°109.8°
C04C08H10111.5°109.8°
O27C25C22114.1°120.0°
C25O27H24109.5°116.9°
C25C22C23113.0°109.6°
C25C22C21108.7°109.6°
C25C22H15107.4°109.5°
C08N07C09125.2°126.6°
N07C08H9111.5°109.8°
N07C08H10111.5°109.9°
N07C09O10122.9°120.0°
N07C09C11111.4°120.0°
C22C23C24109.4°109.3°
C23C22C21111.6°109.2°
C23C22H15107.9°109.5°
C22C23H16109.5°109.5°
C22C23H17109.5°109.5°
C23C24N19113.2°109.5°
C24C23H16109.5°109.5°
C24C23H17109.5°109.5°
C23C24H18108.5°109.5°
C23C24H19108.5°109.5°
C22C21C20110.6°109.3°
C22C21H13109.2°109.5°
C22C21H14109.2°109.5°
C21C22H15108.0°109.5°
O10C09C11125.7°120.0°
C09C11O12112.0°109.4°
C09C11H1108.9°109.5°
C09C11H2108.9°109.5°
C24N19C20116.2°111.2°
C24N19C18120.9°111.0°
N19C24H18108.5°109.5°
N19C24H19108.5°109.4°
C21C20N19115.4°109.5°
C21C20H11108.0°109.4°
C21C20H12108.0°109.4°
C20C21H13109.2°109.5°
C20C21H14109.2°109.5°
C11O12C13113.7°117.0°
O12C11H1108.8°109.5°
O12C11H2108.8°109.5°
O12C13C18118.6°120.1°
O12C13C14118.9°120.1°
C20N19C18117.4°111.0°
N19C20H11107.9°109.5°
N19C20H12108.0°109.5°
N19C18C13118.0°120.1°
N19C18C17125.1°120.1°
C18C13C14122.5°119.8°
C13C18C17116.9°119.8°
C13C14C15119.9°120.0°
C13C14H3120.1°120.0°
C18C17C16121.1°119.9°
C18C17H6119.5°120.0°
C14C15C16118.9°120.1°
C15C14H3120.0°120.0°
C14C15H4120.5°119.9°
C17C16C15120.7°120.2°
C17C16H5119.7°119.9°
C16C17H6119.5°120.0°
C16C15H4120.5°119.9°
C15C16H5119.6°119.9°
H1C11H2109.5°109.5°
H7C06H8109.5°109.9°
H9C08H10109.5°109.8°
H11C20H12109.5°109.5°
H13C21H14109.5°109.5°
H16C23H17109.5°109.5°
H18C24H19109.5°109.4°
H20N01H21109.5°120.0°
H22N29H23109.4°119.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N29C28N30C05179.7°179.8°
N29C28N30C02179.7°179.6°
N29C28C05C060.2°0.0°
N29C28C05C04179.5°179.4°
C28N29H22H23120.0°179.9°
C28N30C02N01179.9°179.7°
C28N30C02N030.7°0.1°
N30C28C05C06179.9°179.8°
N30C28C05C040.8°0.8°
N30C28N29H220.0°179.8°
N30C28N29H23120.0°0.2°
C02N30C28C050.0°0.6°
N30C02N01N03179.3°179.8°
N30C02N03C040.5°0.2°
N30C02N01H200.0°179.7°
N30C02N01H21120.0°0.1°
C28C05C06C04179.4°179.4°
C28C05C04N031.1°0.6°
C28C05C06N07172.1°179.4°
C28C05C04C08179.6°179.5°
C28C05C06H769.3°59.9°
C28C05C06H853.6°61.0°
C05C28N29H22179.7°0.0°
C05C28N29H2360.3°180.0°
N01C02N03C04179.7°180.0°
C02N01H20H21120.0°179.9°
C02N03C04C050.5°0.1°
C02N03C04C08179.8°180.0°
N03C02N01H20179.3°0.1°
N03C02N01H2160.7°180.0°
C06C05C04N03179.5°179.9°
C05C06N07H7118.5°119.5°
C05C06N07H8118.5°119.6°
C06C05C04C080.1°0.0°
C05C06N07C0812.5°0.0°
C05C06N07C09168.3°180.0°
C05C06H7H8124.1°120.9°
C05C04N03C08179.3°179.9°
C04C05C06N077.2°0.0°
C05C04C08N077.4°0.0°
C04C05C06H7111.3°119.5°
C04C05C06H8125.8°119.5°
C05C04C08H9126.1°119.5°
C05C04C08H10111.2°119.6°
N03C04C08N07173.2°179.9°
N03C04C08H954.5°60.4°
N03C04C08H1068.2°60.5°
O26C25O27C22179.2°180.0°
O26C25C22C2333.5°119.7°
O26C25C22C2190.9°0.0°
O26C25C22H15152.5°120.1°
O26C25O27H240.0°0.0°
C06N07C08C0412.6°0.0°
C06N07C08C09179.2°180.0°
C06N07C09O100.8°0.1°
C06N07C09C11179.0°180.0°
N07C06H7H8124.2°120.9°
C06N07C08H9131.2°119.5°
C06N07C08H10106.0°119.6°
C04C08N07H9118.6°119.5°
C04C08N07H10118.6°119.6°
C04C08N07C09168.3°180.0°
C04C08H9H10123.9°120.8°
O27C25C22C23147.1°60.2°
O27C25C22C2188.5°180.0°
O27C25C22H1528.2°59.9°
C25C22C23C21122.8°120.0°
C25C22C23H15118.6°120.1°
C25C22C23C24178.2°177.7°
C25C22C21H15116.3°120.1°
C25C22C21C20179.8°177.6°
C25C22C21H1360.0°62.4°
C25C22C21H1459.7°57.6°
C25C22C23H1658.2°62.4°
C25C22C23H1761.8°57.7°
C22C25O27H24179.2°180.0°
C08N07C09O10179.9°180.0°
C08N07C09C111.9°0.0°
C08N07C06H7106.0°119.5°
C08N07C06H8131.0°119.5°
N07C08H9H10123.9°120.9°
N07C09O10C11177.9°179.9°
N07C09C11O12100.9°180.0°
N07C09C11H1138.8°60.0°
N07C09C11H219.5°60.0°
C09N07C06H773.2°60.5°
C09N07C06H849.8°60.4°
C09N07C08H949.6°60.5°
C09N07C08H1073.1°60.4°
C22C23C24H16120.0°119.9°
C22C23C24H17120.0°119.9°
C23C22C21H15118.5°119.9°
C22C23C24N1953.6°59.2°
C23C22C21C2054.9°57.6°
C23C22C21H1365.3°177.6°
C23C22C21H14175.1°62.4°
C22C23H16H17120.1°120.1°
C22C23C24H1867.0°60.9°
C22C23C24H19174.1°179.1°
C24C23C22C2159.0°57.7°
C23C24N19H18120.6°120.1°
C23C24N19H19120.6°120.0°
C23C24N19C2046.0°61.8°
C23C24N19C18160.9°174.1°
C24C23C22H1559.6°62.3°
C24C23H16H17120.0°120.1°
C23C24H18H19118.3°120.0°
C22C21C20H13120.2°119.9°
C22C21C20H14120.2°120.0°
C22C21C20N1945.8°59.2°
C22C21C20H11166.6°179.2°
C22C21C20H1275.1°60.8°
C22C21H13H14119.5°120.1°
C21C22C23H16179.0°177.6°
C21C22C23H1761.0°62.3°
O10C09C11O1281.0°0.0°
O10C09C11H139.4°120.0°
O10C09C11H2158.6°120.0°
C09C11O12H1120.4°120.0°
C09C11O12H2120.4°120.0°
C09C11O12C13112.5°180.0°
C09C11H1H2118.9°120.0°
C24N19C20C2142.2°61.8°
C24N19C20C18154.1°124.1°
C24N19C18C1378.0°120.0°
C24N19C18C17103.1°60.0°
C24N19C20H11163.1°178.3°
C24N19C20H1278.6°58.2°
N19C24C23H16173.6°179.1°
N19C24C23H1766.4°60.7°
N19C24H18H19118.3°119.9°
C21C20N19H11120.9°120.0°
C21C20N19H12120.9°120.0°
C21C20N19C18163.7°174.1°
C21C20H11H12117.3°119.9°
C20C21H13H14119.5°120.1°
C20C21C22H1563.6°62.3°
C11O12C13C18142.3°180.0°
C11O12C13C1438.0°0.3°
O12C11H1H2118.8°120.0°
O12C13C18N190.3°0.3°
O12C13C18C14179.6°179.7°
O12C13C18C17179.4°179.7°
O12C13C14C15179.5°179.7°
C13O12C11H17.9°60.0°
C13O12C11H2127.1°60.0°
O12C13C14H30.5°0.3°
C20N19C18C13129.2°115.8°
C20N19C18C1749.7°64.2°
N19C20H11H12117.3°120.0°
N19C20C21H1374.4°179.1°
N19C20C21H14166.0°60.8°
C20N19C24H1874.6°58.3°
C20N19C24H19166.6°178.2°
N19C18C13C17179.1°180.0°
N19C18C13C14179.3°180.0°
N19C18C17C16179.4°180.0°
N19C18C17H60.6°0.1°
C18N19C20H1142.8°54.2°
C18N19C20H1275.5°65.9°
C18N19C24H1878.6°65.8°
C18N19C24H1940.3°54.1°
C18C13C14C150.1°0.0°
C13C18C17C160.4°0.0°
C18C13C14H3179.9°180.0°
C13C18C17H6179.6°179.9°
C14C13C18C170.3°0.0°
C13C14C15H3180.0°179.9°
C13C14C15C160.1°0.0°
C13C14C15H4179.9°179.9°
C18C17C16H6180.0°179.9°
C18C17C16C150.4°0.0°
C18C17C16H5179.6°180.0°
C14C15C16C170.3°0.0°
C14C15C16H4180.0°179.9°
C14C15C16H5179.7°180.0°
C17C16C15H5180.0°180.0°
C17C16C15H4179.7°180.0°
C16C15C14H3179.9°179.9°
C15C16C17H6179.6°180.0°
H3C14C15H40.1°0.0°
H4C15C16H50.2°0.1°
H5C16C17H60.4°0.0°
H11C20C21H1346.5°60.9°
H11C20C21H1473.2°59.2°
H12C20C21H13164.8°59.1°
H12C20C21H1445.1°179.2°
H13C21C22H15176.3°57.7°
H14C21C22H1556.6°177.7°
H15C22C23H1660.4°57.7°
H15C22C23H17179.5°177.8°
H16C23C24H1853.0°59.1°
H16C23C24H1965.9°60.9°
H17C23C24H18173.1°179.2°
H17C23C24H1954.2°59.2°

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon