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VXX

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1CO1sing1.39Å1.40ÅAromatic
C1CO2doub1.39Å1.39ÅAromatic
C1CCsing1.45Å1.46Å
CO1CM1doub1.39Å1.40ÅAromatic
CO1HO1sing1.09Å1.10Å
CO2CM2sing1.39Å1.39ÅAromatic
CO2HO2sing1.09Å1.10Å
CM1CZsing1.39Å1.39ÅAromatic
CM1HM1sing1.09Å1.10Å
CM2OMsing1.36Å1.36Å
CM2CZdoub1.40Å1.45ÅAromatic
OMCVsing1.43Å1.44Å
CZO3sing1.36Å1.37Å
CCO1doub1.24Å1.21Å
CCO2sing1.37Å1.42Å
CVHVC1sing1.09Å1.12Å
CVHVC2sing1.09Å1.12Å
CVHVC3sing1.09Å1.11Å
O2C9sing1.43Å1.42Å
O3H3sing0.97Å0.95Å
C9H9C1sing1.09Å1.12Å
C9H9C2sing1.09Å1.11Å
C9H9C3sing1.09Å1.11Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CO1C1CO2121.0°120.0°
CO1C1CC119.0°120.0°
C1CO1CM1120.5°120.0°
C1CO1HO1119.8°120.6°
CO2C1CC120.0°120.0°
C1CO2CM2118.9°120.0°
C1CO2HO2120.5°120.2°
C1CCO1123.4°124.5°
C1CCO2114.1°111.6°
CM1CO1HO1119.7°119.4°
CO1CM1CZ119.7°120.0°
CO1CM1HM1120.2°119.7°
CM2CO2HO2120.5°119.7°
CO2CM2OM123.6°119.5°
CO2CM2CZ120.6°120.0°
CZCM1HM1120.1°120.3°
CM1CZCM2119.2°120.0°
CM1CZO3123.8°119.5°
OMCM2CZ115.7°120.5°
CM2OMCV120.8°117.1°
CM2CZO3117.0°120.6°
OMCVHVC1120.8°109.5°
OMCVHVC2108.1°109.5°
OMCVHVC3108.2°109.0°
CZO3H3123.8°110.2°
O1CCO2122.4°123.9°
CCO2C9118.6°116.9°
HVC1CVHVC2108.2°110.1°
HVC1CVHVC3108.2°109.4°
HVC2CVHVC3101.7°109.4°
O2C9H9C1118.6°109.6°
O2C9H9C2108.9°109.5°
O2C9H9C3108.9°109.0°
H9C1C9H9C2108.9°110.1°
H9C1C9H9C3108.9°109.3°
H9C2C9H9C3101.2°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CO1C1CO2CC179.7°180.0°
C1CO1CM1HO1180.0°180.0°
CO1C1CO2CM20.8°0.0°
CO1C1CO2HO2179.2°180.0°
C1CO1CM1CZ2.2°0.0°
C1CO1CM1HM1177.7°180.0°
CO1C1CCO1179.7°30.0°
CO1C1CCO23.3°149.9°
CO2C1CO1CM12.0°0.0°
CO2C1CO1HO1178.0°180.0°
C1CO2CM2HO2180.0°180.0°
C1CO2CM2OM179.9°180.0°
C1CO2CM2CZ0.1°0.0°
CO2C1CCO10.6°150.0°
CO2C1CCO2176.9°30.1°
CCC1CO1CM1178.2°180.0°
CCC1CO1HO11.7°0.0°
CCC1CO2CM2179.4°180.0°
CCC1CO2HO20.6°0.0°
C1CCO1O2176.1°179.9°
C1CCO2C9173.9°179.9°
CO1CM1CZHM1180.0°180.0°
CO1CM1CZCM21.3°0.0°
CO1CM1CZO3179.2°180.0°
HO1CO1CM1CZ177.8°180.0°
HO1CO1CM1HM12.2°0.0°
CO2CM2CZCM10.1°0.0°
CO2CM2OMCZ179.8°180.0°
CO2CM2OMCV3.3°90.0°
CO2CM2CZO3179.7°180.0°
HO2CO2CM2OM0.1°0.0°
HO2CO2CM2CZ179.9°180.0°
CM1CZCM2OM179.7°180.0°
CM1CZCM2O3179.6°180.0°
CM1CZO3H3180.0°36.5°
HM1CM1CZCM2178.7°180.0°
HM1CM1CZO30.8°0.0°
OMCM2CZO30.2°0.0°
CM2OMCVHVC1180.0°82.1°
CM2OMCVHVC254.7°38.6°
CM2OMCVHVC354.7°158.3°
CZCM2OMCV176.5°90.0°
CM2CZO3H30.5°143.6°
OMCVHVC1HVC2125.2°120.4°
OMCVHVC1HVC3125.3°119.4°
OMCVHVC2HVC3113.8°119.4°
O1CCO2C92.5°0.0°
CCO2C9H9C1180.0°6.6°
CCO2C9H9C254.7°127.4°
CCO2C9H9C354.7°113.0°
HVC1CVHVC2HVC3113.8°120.2°
O2C9H9C1H9C2125.2°120.5°
O2C9H9C1H9C3125.3°119.4°
O2C9H9C2H9C3114.6°119.4°
H9C1C9H9C2H9C3114.6°120.1°

225681

PDB entries from 2024-10-02

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