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Summary Geometry Related PDB entries

VW1

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C2	sing	1.53Å	1.51Å
C2	O1	sing	1.43Å	1.43Å
O1	C3	sing	1.36Å	1.38Å
C3	C4	doub	1.39Å	1.38Å	Aromatic
C4	C5	sing	1.38Å	1.38Å	Aromatic
C5	C6	doub	1.40Å	1.39Å	Aromatic
C6	C7	sing	1.43Å	1.44Å
C7	N1	trip	1.14Å	1.15Å
C6	C8	sing	1.40Å	1.39Å	Aromatic
C8	C9	doub	1.38Å	1.38Å	Aromatic
C2	C10	sing	1.51Å	1.52Å
C10	O2	doub	1.21Å	1.24Å
C10	N2	sing	1.35Å	1.32Å
C3	C9	sing	1.39Å	1.39Å	Aromatic
C4	H5	sing	1.08Å	1.08Å
C5	H6	sing	1.08Å	1.08Å
C8	H7	sing	1.08Å	1.08Å
C1	H1	sing	1.09Å	1.10Å
C1	H2	sing	1.09Å	1.10Å
C1	H3	sing	1.09Å	1.10Å
C2	H4	sing	1.09Å	1.10Å
C9	H8	sing	1.08Å	1.08Å
N2	H9	sing	0.97Å	1.00Å
N2	H10	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C1	C2	O1	107.8°	109.4°
C1	C2	C10	110.6°	109.5°
C2	C1	H1	109.5°	109.5°
C2	C1	H2	109.5°	109.5°
C2	C1	H3	109.5°	109.4°
C1	C2	H4	109.0°	109.5°
C2	O1	C3	121.2°	117.0°
O1	C2	C10	110.3°	109.5°
O1	C2	H4	110.2°	109.5°
O1	C3	C4	125.5°	119.9°
O1	C3	C9	114.4°	119.9°
C3	C4	C5	119.8°	120.1°
C4	C3	C9	120.1°	120.2°
C3	C4	H5	120.1°	120.0°
C4	C5	C6	120.2°	119.9°
C5	C4	H5	120.1°	119.9°
C4	C5	H6	119.9°	120.1°
C5	C6	C7	120.0°	120.1°
C5	C6	C8	119.7°	119.8°
C6	C5	H6	119.9°	120.0°
C6	C7	N1	177.8°	180.0°
C7	C6	C8	120.3°	120.1°
C6	C8	C9	120.1°	119.9°
C6	C8	H7	120.0°	120.0°
C8	C9	C3	120.0°	120.1°
C9	C8	H7	120.0°	120.0°
C8	C9	H8	120.0°	120.0°
C2	C10	O2	119.7°	120.0°
C2	C10	N2	116.6°	120.0°
C10	C2	H4	108.9°	109.5°
O2	C10	N2	123.7°	120.0°
C10	N2	H9	120.0°	120.0°
C10	N2	H10	120.0°	120.0°
C3	C9	H8	120.0°	120.0°
H1	C1	H2	109.4°	109.5°
H1	C1	H3	109.5°	109.4°
H2	C1	H3	109.5°	109.4°
H9	N2	H10	120.0°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C1	C2	O1	C10	120.8°	120.0°
C1	C2	O1	H4	118.9°	120.0°
C1	C2	O1	C3	158.7°	84.7°
C1	C2	C10	H4	119.8°	120.0°
C1	C2	C10	O2	77.4°	115.0°
C1	C2	C10	N2	102.1°	65.0°
C2	C1	H1	H2	120.0°	120.1°
C2	C1	H1	H3	120.0°	120.0°
C2	C1	H2	H3	120.0°	119.9°
C2	O1	C3	C4	34.8°	174.5°
O1	C2	C10	H4	121.1°	120.0°
O1	C2	C10	O2	163.5°	4.9°
O1	C2	C10	N2	17.0°	175.0°
C2	O1	C3	C9	148.3°	5.1°
O1	C2	C1	H1	180.0°	60.0°
O1	C2	C1	H2	60.0°	60.1°
O1	C2	C1	H3	60.0°	180.0°
O1	C3	C4	C9	176.7°	179.6°
O1	C3	C4	C5	178.7°	180.0°
O1	C3	C9	C8	178.6°	180.0°
C3	O1	C2	C10	80.5°	155.3°
O1	C3	C4	H5	1.4°	0.2°
C3	O1	C2	H4	39.9°	35.3°
O1	C3	C9	H8	1.3°	0.2°
C3	C4	C5	H5	180.0°	179.8°
C3	C4	C5	C6	1.7°	0.2°
C4	C3	C9	C8	1.6°	0.4°
C3	C4	C5	H6	178.3°	179.8°
C4	C3	C9	H8	178.4°	179.8°
C4	C5	C6	H6	180.0°	180.0°
C4	C5	C6	C7	178.8°	179.9°
C4	C5	C6	C8	1.0°	0.0°
C5	C4	C3	C9	1.9°	0.5°
C5	C6	C7	C8	179.9°	180.0°
C5	C6	C7	N1	19.7°	56.5°
C5	C6	C8	C9	0.6°	0.0°
C6	C5	C4	H5	178.4°	180.0°
C5	C6	C8	H7	179.3°	180.0°
C7	C6	C8	C9	179.2°	179.9°
C7	C6	C5	H6	1.2°	0.0°
C7	C6	C8	H7	0.8°	0.0°
N1	C7	C6	C8	160.4°	123.5°
C6	C8	C9	H7	180.0°	179.9°
C6	C8	C9	C3	0.9°	0.2°
C8	C6	C5	H6	179.0°	180.0°
C6	C8	C9	H8	179.1°	180.0°
C8	C9	C3	H8	180.0°	179.8°
C2	C10	O2	N2	179.4°	180.0°
C10	C2	C1	H1	59.3°	180.0°
C10	C2	C1	H2	179.3°	59.9°
C10	C2	C1	H3	60.7°	60.0°
C2	C10	N2	H9	179.4°	180.0°
C2	C10	N2	H10	0.6°	0.1°
O2	C10	C2	H4	42.5°	125.0°
O2	C10	N2	H9	0.0°	0.1°
O2	C10	N2	H10	180.0°	180.0°
N2	C10	C2	H4	138.1°	55.0°
C10	N2	H9	H10	180.0°	179.9°
C9	C3	C4	H5	178.1°	179.8°
C3	C9	C8	H7	179.1°	179.7°
H5	C4	C5	H6	1.7°	0.0°
H7	C8	C9	H8	0.9°	0.0°
H1	C1	H2	H3	119.9°	120.0°
H1	C1	C2	H4	60.4°	59.9°
H2	C1	C2	H4	59.6°	180.0°
H3	C1	C2	H4	179.6°	60.0°

249697

PDB entries from 2026-02-25

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