Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

VVR

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CC1doub1.38Å1.32ÅAromatic
CC5sing1.38Å1.39ÅAromatic
C1C2sing1.38Å1.29ÅAromatic
C5C4doub1.38Å1.30ÅAromatic
C2C3doub1.39Å1.39ÅAromatic
C4C3sing1.39Å1.31ÅAromatic
C3Osing1.36Å1.29Å
OC6sing1.43Å1.36Å
O1C8doub1.21Å1.20Å
C6C7sing1.53Å1.45Å
C8O2sing1.34Å1.14Å
C8C7sing1.51Å1.50Å
C7H1sing1.09Å1.10Å
C7H2sing1.09Å1.10Å
C1H3sing1.08Å1.08Å
C5H4sing1.08Å1.08Å
C6H5sing1.09Å1.10Å
C6H6sing1.09Å1.10Å
C4H7sing1.08Å1.08Å
C2H8sing1.08Å1.08Å
O2H9sing0.97Å0.95Å
CH10sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C1CC5119.4°120.1°
CC1C2119.1°120.1°
CC1H3120.4°120.0°
C1CH10120.3°119.9°
CC5C4121.7°120.1°
CC5H4119.1°120.0°
C5CH10120.3°119.9°
C1C2C3120.9°119.9°
C2C1H3120.4°120.0°
C1C2H8119.5°120.0°
C5C4C3118.3°120.0°
C4C5H4119.1°120.0°
C5C4H7120.9°120.0°
C2C3C4120.5°119.9°
C2C3O116.5°120.1°
C3C2H8119.6°120.0°
C4C3O123.0°120.0°
C3C4H7120.8°120.1°
C3OC6118.6°117.0°
OC6C7108.5°109.4°
OC6H5109.7°109.4°
OC6H6109.7°109.5°
O1C8O2127.9°120.1°
O1C8C7118.0°120.0°
C6C7C8104.7°109.4°
C6C7H1110.7°109.5°
C6C7H2110.6°109.5°
C7C6H5109.7°109.5°
C7C6H6109.7°109.5°
O2C8C7114.0°120.0°
C8O2H9109.5°117.0°
C8C7H1110.7°109.5°
C8C7H2110.7°109.4°
H1C7H2109.5°109.5°
H5C6H6109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C1CC5H10180.0°180.0°
CC1C2H3180.0°179.7°
C1CC5C40.4°0.0°
CC1C2C30.6°0.3°
C1CC5H4179.6°179.7°
CC1C2H8179.4°179.8°
C5CC1C20.1°0.0°
CC5C4H4180.0°179.7°
CC5C4C31.2°0.3°
C5CC1H3179.9°179.7°
CC5C4H7178.8°179.7°
C1C2C3H8180.0°180.0°
C1C2C3C41.5°0.6°
C1C2C3O175.7°180.0°
C2C1CH10179.9°180.0°
C5C4C3C21.7°0.6°
C5C4C3H7180.0°180.0°
C5C4C3O175.3°180.0°
C4C5CH10179.6°180.0°
C2C3C4O177.0°179.4°
C2C3OC6165.0°0.6°
C3C2C1H3179.4°180.0°
C2C3C4H7178.3°179.4°
C4C3OC617.9°180.0°
C3C4C5H4178.8°180.0°
C4C3C2H8178.6°179.5°
C3OC6C7179.1°180.0°
C3OC6H561.0°60.0°
C3OC6H659.3°60.0°
OC3C4H74.7°0.0°
OC3C2H84.2°0.1°
OC6C7H5119.8°119.9°
OC6C7H6119.9°120.0°
OC6C7C873.9°180.0°
OC6C7H1166.8°60.1°
OC6C7H245.3°60.0°
OC6H5H6120.4°120.0°
O1C8C7C654.3°0.0°
O1C8O2C7177.7°180.0°
O1C8C7H164.9°120.0°
O1C8C7H2173.6°120.0°
O1C8O2H90.0°0.0°
C6C7C8O2123.6°180.0°
C6C7C8H1119.2°120.0°
C6C7C8H2119.2°120.0°
C6C7H1H2122.2°120.1°
C7C6H5H6120.4°120.1°
O2C8C7H1117.2°60.0°
O2C8C7H24.4°60.0°
C8C7H1H2122.2°120.0°
C8C7C6H545.9°60.0°
C8C7C6H6166.2°60.0°
C7C8O2H9177.6°180.0°
H1C7C6H573.3°180.0°
H1C7C6H647.0°59.9°
H2C7C6H5165.2°59.9°
H2C7C6H674.5°180.0°
H3C1C2H80.6°0.0°
H3C1CH100.2°0.2°
H4C5C4H71.2°0.0°
H4C5CH100.4°0.2°

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon